Search results for "TRIX"
showing 10 items of 3314 documents
Structural analysis of the O-specific polysaccharide isolated from Plesiomonas shigelloides O51 lipopolysaccharide.
2009
Plesiomonasshigelloides strain CNCTC 110/92 (O51) was identified as a new example of plesiomonads synthesising lipopolysaccharides (LPSs) that show preference for a non-aqueous surrounding during phenol/water extraction. Chemical analyses combined with (1)H and (13)C NMR spectroscopy, MALDI-TOF and ESI mass spectrometry showed that the repeating units of the O-specific polysaccharides isolated from phenol and water phase LPSs of P. shigelloides O51 have the same structure: -->4)-beta-D-GlcpNAc3NRA-(1-->4)-alpha-L-FucpAm3OAc-(1-->3)-alpha-D-QuipNAc-(1-->, containing the rare sugar constituent 2,3-diamino-2,3-dideoxyglucuronic acid (GlcpNAc3NRA), and substituents such as D-3-hydroxybutyric ac…
New perspectives on diastereoselective determination of hexabromocyclododecane traces in fish by ultra high performance liquid chromatography-high re…
2014
a b s t r a c t A new analytical method is presented for diastereoisomer-specific identification and quantitation of hexabromocyclododecanes (HBCD) in fish samples. The method is based on extraction of the target analytes from samples with a mixture of organic solvents, with further three-stage clean-up includ- ing destructive removal of matrix components with sulphuric acid and acid-impregnated silica gel, and Florisil adsorption column chromatography. Ultra high performance liquid chromatography (UPLC) cou- pled with high resolution (HR) Orbitrap mass spectrometry featuring heated electrospray ionization (HESI-II) interface operated in negative ion mode was employed for the identification…
Structural analysis of the lipid A isolated from Hafnia alvei 32 and PCM 1192 lipopolysaccharides[S]
2010
Hafnia alvei, a Gram-negative bacterium, is an opportunistic pathogen associated with mixed hospital infections, bacteremia, septicemia, and respiratory diseases. The majority of clinical symptoms of diseases caused by this bacterium have a lipopolysaccharide (LPS, endotoxin)-related origin. The lipid A structure affects the biological activity of endotoxins predominantly. Thus, the structure of H. alvei lipid A was analyzed for the first time. The major form, asymmetrically hexa-acylated lipid A built of beta-D-GlcpN4P-(1-->6)-alpha-D-GlcpN1P substituted with (R)-14:0(3-OH) at N-2 and O-3, 14:0(3-(R)-O-12:0) at N-2', and 14:0(3-(R)-O-14:0) at O-3', was identified by ESI-MS(n) and MALDI-tim…
Isolated glyoxylic acid-water 1:1 complexes in low temperature argon matrices
2015
Abstract The 1:1 hydrogen bonded complexes between glyoxylic acid (GA) and water are studied in low temperature argon matrices. Four different complex structures were found in deposited matrices. The lowest energy conformer (T1) of GA was found to form complex, where the water molecule was attached to the opposite side of the intramolecular hydrogen bond in the molecule (T1B). Interestingly, this complex was estimated to be +8.0 kJ mol −1 higher in energy than the most stable structure (T1A), where the water is inserted into the internal hydrogen bond, and also found in solid argon but in smaller abundance. For the second-lowest energy conformer of GA (T2), the two lowest-energy complex str…
CUDA-enabled Sparse Matrix–Vector Multiplication on GPUs using atomic operations
2013
We propose the Sliced Coordinate Format (SCOO) for Sparse Matrix-Vector Multiplication on GPUs.An associated CUDA implementation which takes advantage of atomic operations is presented.We propose partitioning methods to transform a given sparse matrix into SCOO format.An efficient Dual-GPU implementation which overlaps computation and communication is described.Extensive performance comparisons of SCOO compared to other formats on GPUs and CPUs are provided. Existing formats for Sparse Matrix-Vector Multiplication (SpMV) on the GPU are outperforming their corresponding implementations on multi-core CPUs. In this paper, we present a new format called Sliced COO (SCOO) and an efficient CUDA i…
cuBool: Bit-Parallel Boolean Matrix Factorization on CUDA-Enabled Accelerators
2018
Boolean Matrix Factorization (BMF) is a commonly used technique in the field of unsupervised data analytics. The goal is to decompose a ground truth matrix C into a product of two matrices A and $B$ being either an exact or approximate rank k factorization of C. Both exact and approximate factorization are time-consuming tasks due to their combinatorial complexity. In this paper, we introduce a massively parallel implementation of BMF - namely cuBool - in order to significantly speed up factorization of huge Boolean matrices. Our approach is based on alternately adjusting rows and columns of A and B using thousands of lightweight CUDA threads. The massively parallel manipulation of entries …
Silicateins - A Novel Paradigm in Bioinorganic Chemistry: Enzymatic Synthesis of Inorganic Polymeric Silica
2013
The inorganic matrix of the siliceous skeletal elements of sponges, that is, spicules, is formed of amorphous biosilica. Until a decade ago, it remained unclear how the hard biosilica monoliths of the spicules are formed in sponges that live in a silica-poor (<50 mu m) aquatic environment. The following two discoveries caused a paradigm shift and allowed an elucidation of the processes underlying spicule formation; first the discovery that in the spicules only one major protein, silicatein, exists and second, that this protein displays a bio-catalytical, enzymatic function. These findings caused a paradigm shift, since silicatein is the first enzyme that catalyzes the formation of an inorga…
Finite-time stability analysis and stabilization for linear discrete-time system with time-varying delay
2014
Abstract The problem of finite-time stability for linear discrete-time systems with time-varying delay is studied in this paper. In order to deal with the time delay, the original system is firstly transformed into two interconnected subsystems. By constructing a delay-dependent Lyapunov–Krasovskii functional and using a two-term approximation of the time-varying delay, sufficient conditions of finite-time stability are derived and expressed in terms of linear matrix inequalities (LMIs). The derived stability conditions can be applied into analyzing the finite-time stability and deriving the maximally tolerable delay. Compared with the existing results on finite-time stability, the derived …
D-stability for discrete-time t-s fuzzy descriptor systems with multiple delays
2014
In this work, the D-stability problem is considered for a class of discrete-time Takagi-Sugeno (T-S) fuzzy descriptor systems with multiple state delays. In terms of linear matrix inequality, sufficient conditions are proposed to ensure that all poles of the descriptor T-S fuzzy system are located within a disk contained in the unit circle. Moreover, a sufficient condition is presented such that the singular system is regular, causal and D-stable in spite of multiple state delays. Finally, an example is given to show the effectiveness and advantages of the proposed techniques Refereed/Peer-reviewed
Elimination of the unknown irrelevant matrix absorbance by using the H-Point Standard Additions Method (HPSAM)
1994
It is demonstrated how the H-Point Standard Additions Method (HPSAM) using DeltaA as analytical signal (from data at three previously selected wavelengths) is only related with analyte concentration when unknown irrelevant matrix absorbance is present. The method is compared with the most common previously reported methods, such as derivative spectroscopy or the compensation method. The obtained results show that the proposed HPSAM leads to the same found concentration of analyte as the other reported methods, except detection limits and standard deviation for six replicates which are lower, because of the use of absorbance data (instead of first derivative data as usual). In addition, the …