Search results for "Techniques"

showing 10 items of 4426 documents

Terpenoid bio-transformations and applications via cell/organ cultures: a systematic review.

2019

Structurally diverse natural products are valued for their targeted biological activity. The challenge of working with such metabolites is their low natural abundance and complex structure, often with multiple stereocenters, precludes large-scale or unsophisticated chemical synthesis. Since select plants contain the enzymatic machinery necessary to produce specialized compounds, tissue cultures can be used to achieve key transformations for large-scale chemical and/or pharmaceutical applications. In this context, plant tissue-culture bio-transformations have demonstrated great promise in the preparation of pharmaceutical products. This review describes the capacity of cultured plant cells t…

0106 biological sciences0303 health sciencesChemistryTerpenesfungiCell Culture TechniquesContext (language use)General MedicinePlants01 natural sciencesApplied Microbiology and BiotechnologyTerpenoid03 medical and health sciences010608 biotechnologyBiochemical engineeringPlant StructuresBiotransformation030304 developmental biologyBiotechnologyCritical reviews in biotechnology
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Stimulation of Defense Reactions in Medicago truncatula by Antagonistic Lipopeptides from Paenibacillus sp. Strain B2

2010

ABSTRACT With the aim of obtaining new strategies to control plant diseases, we investigated the ability of antagonistic lipopolypeptides (paenimyxin) from Paenibacillus sp. strain B2 to elicit hydrogen peroxide (H 2 O 2 ) production and several defense-related genes in the model legume Medicago truncatula . For this purpose, M. truncatula cell suspensions were used and a pathosystem between M. truncatula and Fusarium acuminatum was established. In M. truncatula cell cultures, the induction of H 2 O 2 reached a maximum 20 min after elicitation with paenimyxin, whereas concentrations higher than 20 μM inhibited H 2 O 2 induction and this was correlated with a lethal effect. In plant roots in…

0106 biological sciencesChalcone synthaseCell Culture TechniquesPhenylalanine ammonia-lyase01 natural sciencesApplied Microbiology and BiotechnologyPlant RootsMicrobiologyCell wall03 medical and health sciencesPathosystemPaenibacillusLipopeptidesPlant MicrobiologyFusariumGene Expression Regulation Plant030304 developmental biology[SDV.EE]Life Sciences [q-bio]/Ecology environment0303 health sciencesEcologybiologyfungiPANIBACILLUS SP. STRAIN B2food and beveragesHydrogen Peroxidebiology.organism_classificationMedicago truncatulaCoculture TechniquesInvertaseChitinasebiology.proteinMEDICAGO TRUNCATULAPaenibacillus010606 plant biology & botanyFood ScienceBiotechnology
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A Robust and All-Inclusive Pipeline for Shuffling of Adeno-Associated Viruses.

2018

Adeno-associated viruses (AAV) are attractive templates for engineering of synthetic gene delivery vectors. A particularly powerful technology for breeding of novel vectors with improved properties is DNA family shuffling, i.e., generation of chimeric capsids by homology-driven DNA recombination. Here, to make AAV DNA shuffling available to a wider community, we present a robust experimental and bioinformatical pipeline comprising: (i) standardized and partially codon-optimized plasmids carrying 12 different AAV capsid genes; (ii) a scalable protocol including troubleshooting guide for viral library production; and (iii) the freely available software SALANTO for comprehensive analysis of ch…

0106 biological sciencesComputer sciencevirusesGenetic VectorsBiomedical EngineeringComputational biologymedicine.disease_cause01 natural sciencesBiochemistry Genetics and Molecular Biology (miscellaneous)law.inventionEvolution Molecular03 medical and health scienceschemistry.chemical_compoundPlasmidlaw010608 biotechnologymedicineGeneAdeno-associated virus030304 developmental biology0303 health sciencesShufflingGene Transfer TechniquesGeneral MedicineDependovirusDNA shufflingchemistryCapsidRecombinant DNADNAACS synthetic biology
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Decoding Group Vocalizations: The Acoustic Energy Distribution of Chorus Howls Is Useful to Determine Wolf Reproduction

2016

Population monitoring is crucial for wildlife management and conservation. In the last few decades, wildlife researchers have increasingly applied bioacoustics tools to obtain information on several essential ecological parameters, such as distribution and abundance. One such application involves wolves (Canis lupus). These canids respond to simulated howls by emitting group vocalizations known as chorus howls. These responses to simulated howls reveal the presence of wolf litters during the breeding period and are therefore often used to determine the status of wolf populations. However, the acoustic structure of chorus howls is complex and discriminating the presence of pups in a chorus i…

0106 biological sciencesEntropyPopulation Dynamicslcsh:MedicineWildlife01 natural sciencesVocalizationMathematical and Statistical Techniqueslcsh:ScienceAnimal Signaling and CommunicationIberian wolfMammalseducation.field_of_studyMultidisciplinarybiologyAnimal BehaviorBehavior AnimalEcologyPhysicsReproductionAcoustic energyCanisPhysical SciencesVertebratesThermodynamicsCartographyStatistics (Mathematics)Research ArticleConservation of Natural ResourcesBioacousticsAnimal TypesPopulationResearch and Analysis Methods010603 evolutionary biologyCoyotesAcoustic SignalsAnimalsWildlife managementStatistical MethodseducationEcosystemBehaviorWolvesReproductive success010604 marine biology & hydrobiologylcsh:RChorusOrganismsBiology and Life SciencesAcousticsJackalsModels Theoreticalbiology.organism_classificationAmnioteslcsh:QVocalization AnimalZoologyBioacousticsMathematicsForecasting
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Colonization of flax roots and early physiological responses of flax cells inoculated with pathogenic and nonpathogenic strains of Fusarium oxysporum

2003

ABSTRACT Fusarium oxysporum includes nonpathogenic strains and pathogenic strains that can induce necrosis or tracheomycosis in plants. The objective of this study was to compare the abilities of a pathogenic strain (Foln3) and a nonpathogenic strain (Fo47) to colonize flax roots and to induce early physiological responses in flax cell culture suspensions. Both strains colonized the outer cortex of the root; however, plant defense reactions, i.e., the presence of wall appositions, osmiophilic material, and collapsed cells, were less frequent and less intense in a root colonized by Foln3 than by Fo47. Early physiological responses were measured in flax cell suspensions confronted with germin…

0106 biological sciencesFusariumCell Culture TechniquesFungus01 natural sciencesApplied Microbiology and BiotechnologyPlant RootsMicrobiologyConidium03 medical and health sciencesPlant MicrobiologyFusariumFlaxFusarium oxysporumExtracellularCells CulturedComputingMilieux_MISCELLANEOUS030304 developmental biologyPlant Diseases[SDV.EE]Life Sciences [q-bio]/Ecology environment0303 health sciencesEcologybiologyInoculationfood and beveragesFungi imperfectiHydrogen PeroxideHydrogen-Ion Concentrationbiology.organism_classificationKinetics[SDV.EE] Life Sciences [q-bio]/Ecology environmentCell cultureREPONSE DE LA PLANTECalcium010606 plant biology & botanyFood ScienceBiotechnology
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Improving the conservation of Mediterranean Chondrichthyans : the ELASMOMED DNA barcode reference library

2017

Cartilaginous fish are particularly vulnerable to anthropogenic stressors and environmental change because of their K-selected reproductive strategy. Accurate data from scientific surveys and landings are essential to assess conservation status and to develop robust protection and management plans. Currently available data are often incomplete or incorrect as a result of inaccurate species identifications, due to a high level of morphological stasis, especially among closely related taxa. Moreover, several diagnostic characters clearly visible in adult specimens are less evident in juveniles. Here we present results generated by the ELASMOMED Consortium, a regional network aiming to sample …

0106 biological sciencesHeredityMolecular biologySpeciationBiodiversitySettore BIO/05 - Zoologialcsh:MedicineJuvenileEvolutionary biologyBarcodeBiochemistry01 natural sciencesDNA barcodinglaw.inventionlawDNA librarieslcsh:ScienceChondrichthyesSpecimens IdentificationData ManagementMolecular systematicsMultidisciplinaryGeographyMediterranean RegionEcologyCryptic speciationFishesBiodiversityMorphological stasiMitochondrial DNANucleic acidsGenetic MappingPhylogeographyBiogeographyDNA Barcode Reference LibraryDNA barcoding TaxonomicVertebratesDNA data banksResearch ArticleComputer and Information SciencesConservation of Natural ResourcesEvolutionary ProcessesEvolutionary systematicsBarcoding Chondrichthyans Conservation Mediterranean Sea mtDNACartilaginous fishConservationBiologyPhylogeographic structure010603 evolutionary biologyMolecular taxonomySpecies SpecificityEndemic SpeciesGeneticsMediterranean SeaAnimalsDNA Barcoding TaxonomicDNA barcoding14. Life underwaterEndemismTaxonomyPopulation Biology010604 marine biology & hydrobiologylcsh:REcology and Environmental SciencesOrganismsBiology and Life SciencesDNAResearch and analysis methodsPhylogeographyMolecular biology techniquesTaxonHaplotypesThreatened speciesEarth SciencesSharksConservation statuslcsh:QPopulation GeneticsMarine biodiversity conservationElasmobranchii
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Involvement of putative glutamate receptors in plant defence signaling and NO production

2011

International audience; Ionotropic glutamate receptors (iGluRs) are non-selective cation channels permeable to calcium, present in animals and plants. In mammals, glutamate is a well-known neurotransmitter and recently has been recognized as an immunomodulator. As animals and plants share common mechanisms that govern innate immunity with calcium playing a key role in plant defence activation, we have checked the involvement of putative iGluRs in plant defence signaling. Using tobacco cells, we first provide evidence supporting the activity of iGluRs as calcium channels and their involvement in NO production as reported in animals. Thereafter, iGluRs were shown to be activated in response t…

0106 biological sciencesHypersensitive responsebiochemistry and molecular biologyplant defenceglutamate receptorCell Culture TechniquesGlutamic AcidBiologycalcium signaling01 natural sciencesBiochemistrytobaccoFungal Proteins03 medical and health sciencesnitric oxideelicitorsExcitatory Amino Acid Agonists[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular Biologyrésistance végétalePlant Proteins030304 developmental biologyCalcium signaling0303 health sciencesVoltage-dependent calcium channelAlgal ProteinsGlutamate receptorGeneral MedicineGlutamic acidImmunity InnateElicitortabacReceptors GlutamateBiochemistryMetabotropic glutamate receptorNMDA receptorCalciumExcitatory Amino Acid Antagonists010606 plant biology & botany
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Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions

2009

46 pages, 4 tables, 6 figures, 3 additinoal files.

0106 biological sciencesMESH: Genome PlantArabidopsis thalianaGene regulatory networkArabidopsis01 natural sciencesTranscriptomeGene Expression Regulation PlantArabidopsisMESH: Gene Expression Regulation DevelopmentalCluster AnalysisGene Regulatory NetworksMESH: ArabidopsisMESH: EcosystemMESH: Models GeneticOligonucleotide Array Sequence AnalysisMESH: Gene Regulatory NetworksGenetics0303 health sciencesMESH: Stress MechanicalbiologyMESH: Genomicsfood and beveragesGene Expression Regulation DevelopmentalGenomicsPhenotypeAlgorithmsGenome PlantMESH: MutationSystems biologyGenomicsMESH: AlgorithmsComputational biologyMESH: Arabidopsis ProteinsMESH: Phenotype03 medical and health sciencesMESH: Gene Expression Profiling[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyMESH: Gene Expression Regulation PlantEcosystem030304 developmental biologyModels GeneticMicroarray analysis techniquesArabidopsis ProteinsGene Expression ProfilingResearchfungiRobustness (evolution)biology.organism_classificationMESH: Cluster AnalysisGene expression profilingMutationMESH: Oligonucleotide Array Sequence AnalysisStress Mechanical010606 plant biology & botany
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Evidence for ontogenetically and morphologically distinct alternative reproductive tactics in the invasive Round Goby Neogobius melanostomus.

2017

Alternative reproductive tactics are characterized by the occurrence of discrete alternative morphs that differ in behavioural, morphological and physiological traits within the same sex. Although much effort has been made to describe the behaviour, morphology and physiology of such alternative morphs, less effort has been invested investigating how much overlap there is in the characteristics of such morphs in natural populations. We studied random population samples of the invasive Round Goby Neogobius melanostomus from five different localities in the river Rhine system in the Netherlands. We found two morphologically and physiologically distinct male morphs which likely represent altern…

0106 biological sciencesMaleAnimal sexual behaviourCheeksgenetic structuresPhysiologyMarine and Aquatic Scienceslcsh:MedicineSkin Pigmentation01 natural sciencesBehavioral EcologySexual Behavior AnimalAquaculture and FisheriesSeasonal breederMedicine and Health SciencesBody Sizelcsh:ScienceGeneralLiterature_REFERENCE(e.g.dictionariesencyclopediasglossaries)reproductive and urinary physiologyNetherlandseducation.field_of_studyPrincipal Component AnalysisMultidisciplinaryAnimal BehaviorEcologyAquacultuur en VisserijReproductionGobyFishesPE&RCFreshwater FishGonadosomatic IndexGedragsecologiemedicine.anatomical_structurePhysiological ParametersRound gobyVertebratesRegression AnalysisFemaleAnatomyGenital AnatomyResearch ArticleFreshwater EnvironmentsGonadNeogobiusImaging TechniquesPopulationZoologyBiologyAnimal Sexual BehaviorResearch and Analysis Methods010603 evolutionary biologyRiversOcular SystemmedicineLife ScienceAnimalseducationGonadsAnalysis of VarianceBehavior010604 marine biology & hydrobiologyMorphometryEcology and Environmental Sciencesfungilcsh:RReproductive SystemOrganismsBiology and Life SciencesAquatic EnvironmentsBodies of Waterbiology.organism_classificationPerciformesFaceWIASEarth SciencesEyeslcsh:QIntroduced SpeciesZoologyHeadEnvironmental SciencesPLoS ONE
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The effects of data collection and observation methods on uncertainty of social networks in wild primates

2020

International audience; In social species, network centralities of group members shape social transmission and other social phenomena. Different factors have been found to influence the measurement of social networks, such as data collection and observation methods. In this study, we collected data on adults and juveniles and examined the effect of data collection method (ad libitum sampling vs. focal animal sampling) and observation method (interaction—grooming; play—vs. association—arm‐length; 2 m; 5 m proximities—) on social networks in wild vervet monkeys. First, we showed using a bootstrapping method, that uncertainty of ad libitum grooming and play matrices were lesser than uncertaint…

0106 biological sciencesMaleComputer sciencePooling010603 evolutionary biology01 natural sciencesCorrelationStatisticsChlorocebus aethiopsAnimals0501 psychology and cognitive sciences050102 behavioral science & comparative psychologyProxy (statistics)Social BehaviorSocial network analysisEcology Evolution Behavior and SystematicsSocialityData collectionBehavior AnimalBootstrappingData Collection05 social sciencesSampling (statistics)GroomingPlay and Playthings[SDE]Environmental SciencesAnimal Science and ZoologyFemaleBehavior Observation Techniques
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