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Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error

2021

Phylogenomic studies have improved understanding of deep metazoan phylogeny and show promise for resolving incongruences among analyses based on limited numbers of loci. One region of the animal tree that has been especially difficult to resolve, even with phylogenomic approaches, is relationships within Lophotrochozoa (the animal clade that includes molluscs, annelids, and flatworms among others). Lack of resolution in phylogenomic analyses could be due to insufficient phylogenetic signal, limitations in taxon and/or gene sampling, or systematic error. Here, we investigated why lophotrochozoan phylogeny has been such a difficult question to answer by identifying and reducing sources of sys…

Helobdella robustaGlycera dibranchiataMytilus edulisAnnelidaEntalina tetragonaLeptochiton asellusCerebratulus marginatusLoxosomella cf. viviparaGraptacme eboreaLineus longissimusmedicine and health careClymenella torquataRuditapes philippinarumNucella lapillusHaliotis rufescenslong branch attractionPlatyzoaBarentsia gracilisPriapulus caudatusLineus ruberAlitta virenssaturationProchaetoderma californicumLife SciencesPinctada fucataSchistosoma mansoniPolyzoaCephalothrix hongkongensisRhyssoplax olivaceusLoxosoma pectinaricolaPhascolosoma agassiziiAdineta vagaDrosophila melanogasterEntoproctaBugula neritinaPhoronis vancouverensisMedicineNovocrania anomalaVillosa lienosaDaphnia pulexSagitta sp.Pectinaria gouldiiSymbion americanusNuculana pernulaSepia esculentaEnucula tenuisSolemya velumLineus lacteusTubulanus polymorphus-StruckGnathostomula paradoxaBoccardia proboscideaMacellomenia schanderiLaevipilina hyalinaTubulanus polymorphus-HalanychBryozoaPomatoceros lamarckiiSepioteuthis lessonianaParanemertes peregrinaMalacobdella grossaHemithiris psittaceaLeptochiton rugatusTrochozoaBrachionus plicatilisSpathoderma clenchiLaqueus californicusPatella vulgataLottia giganteaCrepidula fornicataPhoronidaAplysia californicaGlottidia pyramidataPhoronis psammophilaSchmidtea mediterraneaAlexandromenia crassaBrachiopodaMegadasys sp.Octopus vulgarisCapitella teletaNeomenia carinatacompositional heterogeneityNemerteaPhenacolepas pulchellaGadila tolmieiMolluscaMacrodasys sp.Crassostrea gigasPedicellina cernuaTaenia pisiformisDosidicus gigasCephalothrix linearisSpiralia
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Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error

2016

Phylogenomic studies have improved understanding of deep metazoan phylogeny and show promise for resolving incongruences among analyses based on limited numbers of loci. One region of the animal tree that has been especially difficult to resolve, even with phylogenomic approaches, is relationships within Lophotrochozoa (the animal clade that includes molluscs, annelids, and flatworms among others). Lack of resolution in phylogenomic analyses could be due to insufficient phylogenetic signal, limitations in taxon and/or gene sampling, or systematic error. Here, we investigated why lophotrochozoan phylogeny has been such a difficult question to answer by identifying and reducing sources of sys…

Helobdella robustaGlycera dibranchiataMytilus edulisAnnelidaEntalina tetragonaLeptochiton asellusCerebratulus marginatusLoxosomella cf. viviparaGraptacme eboreaLineus longissimusmedicine and health careClymenella torquataRuditapes philippinarumNucella lapillusHaliotis rufescenslong branch attractionPlatyzoaBarentsia gracilisPriapulus caudatusLineus ruberAlitta virenssaturationProchaetoderma californicumPinctada fucataSchistosoma mansoniLife sciencesPolyzoaCephalothrix hongkongensisRhyssoplax olivaceusLoxosoma pectinaricolaPhascolosoma agassiziiAdineta vagaDrosophila melanogasterEntoproctaBugula neritinaPhoronis vancouverensisMedicineNovocrania anomalaVillosa lienosaDaphnia pulexSagitta sp.Pectinaria gouldiiSymbion americanusNuculana pernulaSepia esculentaEnucula tenuisSolemya velumLineus lacteusTubulanus polymorphus-StruckGnathostomula paradoxaBoccardia proboscideaMacellomenia schanderiLaevipilina hyalinaTubulanus polymorphus-HalanychBryozoaPomatoceros lamarckiiSepioteuthis lessonianaParanemertes peregrinaMalacobdella grossaHemithiris psittaceaLeptochiton rugatusTrochozoaBrachionus plicatilisSpathoderma clenchiLaqueus californicusPatella vulgataLottia giganteaCrepidula fornicataPhoronidaAplysia californicaGlottidia pyramidataPhoronis psammophilaSchmidtea mediterraneaAlexandromenia crassaBrachiopodaMegadasys sp.Octopus vulgarisCapitella teletaNeomenia carinatacompositional heterogeneityNemerteaPhenacolepas pulchellaGadila tolmieiMolluscaMacrodasys sp.Crassostrea gigasPedicellina cernuaTaenia pisiformisDosidicus gigasCephalothrix linearisSpiralia
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Association Between Exercise and Pubertal BMD Is Modulated by Estrogen Receptor α Genotype

2003

Genetic and environmental factors contribute to bone mass, but the ways they interact remain poorly understood. This study of 245 pre- and early pubertal girls found that the PvuII polymorphism in the ER- gene modulates the effect of exercise on BMD at loaded bone sites. Introduction: Impaired achievement of bone mass at puberty is an important risk factor for the development of osteoporosis in later life. Genetic, as well as environmental, factors contribute to bone mass, but the ways they interact with each other remain poorly understood. Materials and Methods: We investigated the interaction between a PvuII polymorphism at the ER- gene and physical activity (PA) on the modulation of bone…

Heterozygotemedicine.medical_specialtyAdolescentGenotypemedicine.drug_classEndocrinology Diabetes and MetabolismOsteoporosisEstrogen receptorSingle-nucleotide polymorphismPhysical exerciseBiologyBone and BonesBody Mass IndexRisk FactorsInternal medicineGenotypemedicineBody SizeHumansOrthopedics and Sports MedicineChildDeoxyribonucleases Type II Site-SpecificExercisePolymorphism GeneticHomozygotePubertyEstrogen Receptor alphaHeterozygote advantagemedicine.diseaseEndocrinologyEstrogenBody CompositionFemaleBody mass indexJournal of Bone and Mineral Research
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Schubert calculus and singularity theory

2010

Abstract Schubert calculus has been in the intersection of several fast developing areas of mathematics for a long time. Originally invented as the description of the cohomology of homogeneous spaces, it has to be redesigned when applied to other generalized cohomology theories such as the equivariant, the quantum cohomology, K -theory, and cobordism. All this cohomology theories are different deformations of the ordinary cohomology. In this note, we show that there is, in some sense, the universal deformation of Schubert calculus which produces the above mentioned by specialization of the appropriate parameters. We build on the work of Lerche Vafa and Warner. The main conjecture these auth…

High Energy Physics - TheoryGroup cohomologySchubert calculusGeneral Physics and AstronomyFOS: Physical sciencesMathematics::Algebraic TopologyCohomologyMotivic cohomologyAlgebraMathematics - Algebraic GeometryHigh Energy Physics - Theory (hep-th)Cup productMathematics::K-Theory and HomologyDe Rham cohomologyFOS: MathematicsEquivariant cohomologyGeometry and TopologyAlgebraic Geometry (math.AG)Mathematical PhysicsQuantum cohomologyMathematics
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The diagnosis of polycystic ovary syndrome in adolescents

2010

In women, the definition of polycystic ovary syndrome (PCOS) has become broad and includes several possible phenotypes. Because several features of PCOS may be in evolution in adolescents, we suggest that only firm criteria should be used to make a diagnosis of PCOS during adolescence. Hyperandrogenism, oligomenorrhea, and ovarian morphology change during adolescence and are discussed individually. Adolescents with incomplete criteria for a firm diagnosis of PCOS should be followed up carefully and may be diagnosed at a later time.

Hirsutismmedicine.medical_specialtyAdolescentendocrine system diseasesMEDLINESettore MED/13 - EndocrinologiamedicineHumansCystAmenorrheaUltrasonographyMenarcheGynecologybusiness.industryOvaryPubertyHyperandrogenismnutritional and metabolic diseasesObstetrics and Gynecologymedicine.diseasePolycystic ovaryfemale genital diseases and pregnancy complicationsOligomenorrheaOvarian morphologyMenarcheFemaleUltrasonographyHyperandrogenismbusinessPOLYCYSTIC OVARY SYNDROME ADOLESCENCE MENSTRUAL IRREGULARITIES HIRSUTISMAnovulationPolycystic Ovary Syndrome
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Origin of metazoan adhesion molecules and adhesion receptors as deduced from cDNA analyses in the marine sponge Geodia cydonium: a review.

1997

The phylogenetic relationships of the kingdom Animalia (Metazoa) have long been questioned. Whether the lowest eukaryotic multicellular organisms, the metazoan phylum Porifera (sponges), independently evolved multicellularity from a separate protist lineage (polyphyly of animals) or whether they were derived from the same protist group as the other animal phyla (monophyly) remains unclear. Analyses of the genes that are typical for multicellularity, e.g. those coding for adhesion molecules (galectin) and adhesion receptors (receptor tyrosine kinase, integrin receptor, receptors featuring scavenger receptor cysteine-rich domains) or elements involved in signal transduction pathways (G-protei…

HistologyDNA ComplementaryMembrane GlycoproteinsbiologyCell adhesion moleculeProtistMembrane ProteinsCell Biologybiology.organism_classificationmedicine.disease_causeReceptor tyrosine kinasePathology and Forensic MedicineCell biologyPoriferaSuberites domunculaSpongeBiochemistryPlatelet Glycoprotein GPIb-IX Complexbiology.proteinmedicineAnimalsSignal transductionReceptorCell Adhesion MoleculesGalectinCell and tissue research
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Differentiation capacity of epithelial cells in the sponge Suberites domuncula.

2004

Sponges (phylum Porifera) represent the oldest metazoans. Their characteristic metazoan adhesion molecules and transcription factors enable them to establish a complex "Bauplan" ; three major differentiated cell types (epithelial cells, skeletal cells/sclerocytes, and contractile cells) can be distinguished. Since no molecular markers are as yet available to distinguish these somatic cells or the corresponding embryonic cells from which they originate, we have selected the following three genes for their characterization: noggin (a signaling molecule in development), a caspase that encodes an apoptotic molecule, and silicatein. Silicatein is an enzyme that is involved in the synthesis of si…

HistologySuberites domuncula; sponges; cell differentiationCellular differentiationMolecular Sequence DataPinacodermBiologyPathology and Forensic MedicineEvolution MolecularDemospongeMesohylAnimalsAmino Acid SequenceNogginCloning MolecularPhylogenySclerocyteCell AggregationSequence Homology Amino AcidSilicatesProteinsCell DifferentiationCell BiologyAnatomybiology.organism_classificationCell biologySuberites domunculaSpongeCaspasesCarrier ProteinsSuberitesCell and tissue research
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Histochemical and electron microscopic analysis of spiculogenesis in the demosponge Suberites domuncula.

2006

The skeleton of demosponges is built of spicules consisting of biosilica. Using the primmorph system from Suberites domuncula, we demonstrate that silicatein, the biosilica-synthesizing enzyme, and silicase, the catabolic enzyme, are colocalized at the surface of growing spicules as well as in the axial filament located in the axial canal. It is assumed that these two enzymes are responsible for the deposition of biosilica. In search of additional potential structural molecules that might guide the mineralization process during spiculogenesis to species-specific spicules, electron microscopic studies with antibodies against galectin and silicatein were performed. These studies showed that …

HistologybiologyHistocytochemistryGalectinsMolecular Sequence DataFlagellumbiology.organism_classificationSilicon DioxideMineralization (biology)CathepsinsMicrobiologySilica depositionSuberites domunculaMicroscopy ElectronDemospongeSponge spiculeBiophysicsAnimalsAmino Acid SequenceCollagenAnatomySuberitesElectron microscopicGalectinThe journal of histochemistry and cytochemistry : official journal of the Histochemistry Society
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Alphabet as a pretext. Representation and architecture starting from J.D. Steingruber

2020

Johann David Steingruber (1702-87) realizzò nel 1773 l’ “Alfabeto Architettonico” (titolo originale “Architektonisches Alphabeth bestehend aus 30 Rissen”),ovvero un compendio di edifici immaginari le cui piante presentano la forma delle lettere dell’alfabeto. A partire dall’analisi delle tavole, obiettivo del contributo è presentare una riflessione su questi disegni, sia in relazione alle intrinseche caratteristiche storiche ed estetiche, sia in relazione alla personalità dello Steingruber. Johann David Steingruber (1702-87) realized in 1773 the “Architectural Alphabet” (original title “Architektonisches Alphabeth bestehend aus 30 Rissen”), that is a compendium of imaginary buildings with p…

HistoryComputer scienceDrawingSteingruberRepresentation (arts)ThesaurusProjectSteingruber Alfabeto Architettonico Architettura Storia Disegno ProgettoCompendiumLinguisticsStyle (visual arts)Architectural AlphabetArchitectureSteingruber Architectural Alphabet Architecture History Drawing ProjectsortSettore ICAR/17 - DisegnoArchitectureRelation (history of concept)The Imaginary
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Solemne acte d'investidura com a doctors 'Honoris Causa' dels Srs. Joan Veny i Clar i Roy J. Glauber

2008

Solemne acte d'investidura com a doctor Honoris Causa d'en Joan Veny i Clar i en Roy J. Glauber.

Honoris CausaJoan Veny i Clar Roy J. Glauber. Paranimf de la Nau
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