Search results for "VISUALIZATION"
showing 10 items of 449 documents
CheS-Mapper - Chemical Space Mapping and Visualization in 3D
2012
Abstract Analyzing chemical datasets is a challenging task for scientific researchers in the field of chemoinformatics. It is important, yet difficult to understand the relationship between the structure of chemical compounds, their physico-chemical properties, and biological or toxic effects. To that respect, visualization tools can help to better comprehend the underlying correlations. Our recently developed 3D molecular viewer CheS-Mapper (Chemical Space Mapper) divides large datasets into clusters of similar compounds and consequently arranges them in 3D space, such that their spatial proximity reflects their similarity. The user can indirectly determine similarity, by selecting which f…
THE IMPACT OF VISUAL PERFORMANCE MANAGEMENT ON DECISION-MAKING IN THE ENTREPRENEURIAL PROCESS
2018
Effective decision-making is critical for entrepreneurial success due to constantly changing customer needs. Research has indicated that visual performance management approaches have the potential to improve decision-making during operations in established firms. However, how visual performance management may affect decision-making during the entrepreneurial process has not yet been adequately addressed in the extant research literature. To contribute in filling this knowledge gap, a visual performance management tool called Obeya was adapted and utilised during an entrepreneurial process, and its impact on decision-making during the process was qualitatively explored. The findings indicat…
A novel approach to investigate the evolution of structured tandem repeat protein families by exon duplication.
2020
Tandem Repeat Proteins (TRPs) are ubiquitous in cells and are enriched in eukaryotes. They contributed to the evolution of organism complexity, specializing for functions that require quick adaptability such as immunity-related functions. To investigate the hypothesis of repeat protein evolution through exon duplication and rearrangement, we designed a tool to analyze the relationships between exon/intron patterns and structural symmetries. The tool allows comparison of the structure fragments as defined by exon/intron boundaries from Ensembl against the structural element repetitions from RepeatsDB. The all-against-all pairwise structural alignment between fragments and comparison of the t…
RPPanalyzer Toolbox: An improved R package for analysis of reverse phase protein array data
2014
Analysis of large-scale proteomic data sets requires specialized software tools, tailored toward the requirements of individual approaches. Here we introduce an extension of an open-source software solution for analyzing reverse phase protein array (RPPA) data. The R package RPPanalyzer was designed for data preprocessing followed by basic statistical analyses and proteomic data visualization. In this update, we merged relevant data preprocessing steps into a single user-friendly function and included a new method for background noise correction as well as new methods for noise estimation and averaging of replicates to transform data in such a way that they can be used as input for a new t…
GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data
2021
AbstractBackgroundThe interpretation of results from transcriptome profiling experiments via RNA sequencing (RNA-seq) can be a complex task, where the essential information is distributed among different tabular and list formats - normalized expression values, results from differential expression analysis, and results from functional enrichment analyses. A number of tools and databases are widely used for the purpose of identification of relevant functional patterns, yet often their contextualization within the data and results at hand is not straightforward, especially if these analytic components are not combined together efficiently.ResultsWe developed the GeneTonic software package, whi…
Strategies for annotation and curation of translational databases: the eTUMOUR project
2012
Altres ajuts: LSHC/CT2004-503094 The eTUMOUR (eT) multi-centre project gathered in vivo and ex vivo magnetic resonance (MR) data, as well as transcriptomic and clinical information from brain tumour patients, with the purpose of improving the diagnostic and prognostic evaluation of future patients. In order to carry this out, among other work, a database-the eTDB-was developed. In addition to complex permission rules and software and management quality control (QC), it was necessary to develop anonymization, processing and data visualization tools for the data uploaded. It was also necessary to develop sophisticated curation strategies that involved on one hand, dedicated fields for QC-gene…
EFFICIENT MACHINE LEARNING FRAMEWORK FOR COMPUTER-AIDED DETECTION OF CEREBRAL MICROBLEEDS USING THE RADON TRANSFORM
2014
International audience; Recent developments of susceptibility weighted MR techniques have improved visualization of venous vasculature and underlying pathologies such as cerebral microbleed (CMB). CMBs are small round hypointense lesions on MRI images that are emerging as a potential biomarker for cerebrovascular disease. CMB manual rating has limited reliability, is time-consuming and is prone to errors as small CMBs can be easily missed or mistaken for venous crosssections. This paper presents a computer-aided detection technique that utilizes a novel cascade of random forest classifiers which are trained on robust Radon-based features with an unbalanced sample distribution. The training …
Evaluating the Usefulness of the Visualization Tool SimReal+ for Learning Mathematics: A Case Study at the Undergraduate Level
2019
Research on visualization tools is a topic of current concern. SimReal+ is a new visualization tool that is used to teach a wide range of mathematical topics spanning from school to higher education. However, SimReal+ has not been fully evaluated with respect to its potentialities and constraints in educational settings. While technical issues are self-evident requirements, pedagogical and mathematical aspects are much less frequently explored. The aim of this chapter is to assess the usefulness of SimReal+ in an undergraduate mathematics course for engineering students. It uses a set of criteria that cover technical, pedagogical, and mathematical issues.
Cloud Infrastructure for Skin Cancer Scalable Detection System
2018
Skin cancer diagnostics is one of the medical areas where early diagnostic allows achieving patients’ high survival rate. Typically, skin cancer diagnostic is performed by dermatologist, since the amount of such specialists is limited, mortality rate is high [1]. By creating the low cost and easy to use diagnostic device, it is possible to bring skin cancer diagnostic to primary care physicians and allow to check much more persons and diagnose skin cancer on the early stages. There are several existing devices, that provide skin cancer diagnostics [2]. Most of them process the skin images locally and have limited diagnostic capabilities; some of them send images to dermatologists for manual…
Subsequent Keyframe Generation for Visual Servoing
2021
International audience; In this paper, we study the problem of autonomous and reliable positioning of a camera w.r.t. an object when only this latter is known but not the rest of the scene. We propose to combine the advantages and efficiency of a visual servoing scheme and the generalization ability of a generative adversarial network. The paper describes how to efficiently create a synthetic dataset in order to train a network that predicts an intermediate visual keyframe between two images. Subsequent predictions are used as visual features to autonomously converge towards the desired pose even for large displacements. We show that the proposed method can be used without any prior knowled…