Search results for "Vertebrate"

showing 10 items of 830 documents

The shell matrix of the pulmonate land snail Helix aspersa maxima.

2012

12 pages; International audience; In mollusks, the shell mineralization process is controlled by an array of proteins, glycoproteins and polysaccharides that collectively constitute the shell matrix. In spite of numerous researches, the shell protein content of a limited number of model species has been investigated. This paper presents biochemical data on the common edible land snail Helix aspersa maxima, a model organism for ecotoxicological purposes, which has however been poorly investigated from a biomineralization viewpoint. The shell matrix of this species was extracted and analyzed biochemically for functional in vitro inhibition assay, for amino acid and monosaccharides composition…

0106 biological sciencesBiomineralizationPulmonate snailPhysiology01 natural sciencesBiochemistryMineralization (biology)chemistry.chemical_compoundX-Ray DiffractionTandem Mass SpectrometryElectrophoresis Gel Two-DimensionalHaliotisAmino AcidsComputingMilieux_MISCELLANEOUSchemistry.chemical_classification0303 health sciencesEcologyMonosaccharidesLand snailImmunogold labellingImmunohistochemistryAmino acidBiochemistryElectrophoresis Polyacrylamide GelTerrestrial snail ; biomineralization ; shell ; aragonite ; crossed-lamellar ; protein ; immunogold ; gel electrophoresisFrancefood.ingredientBiology010603 evolutionary biologyCalcium Carbonate03 medical and health sciencesfoodSpecies SpecificityAnimal ShellsShellAnimals14. Life underwater[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biology030304 developmental biologyHelix SnailsProteinsCrossed-lamellarbiology.organism_classification[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsGel electrophoresis[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyCalcium carbonatechemistryMicroscopy Electron ScanningBiomineralizationPinctadaComparative biochemistry and physiology. Part B, Biochemistrymolecular biology
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Shell repair process in the green ormer Haliotis tuberculata: a histological and microstructural study.

2008

In the present paper, juvenile and adult shells of the green ormer Haliotis tuberculata ('Oreille de Saint-Pierre') were perforated in a zone close to the shell edge and the shell repair process was followed at two levels: (1) by observing the histology of the calcifying mantle in the repair zone and (2) by analyzing with SEM the microstructure of the shell repair zone. Histological data clearly show the presence of calcium carbonate granules into the connective tissues, but not in the epithelial cells. This suggests that calcium carbonate granules are synthesized by sub-epithelial cells and actively transported through the epithelium to the repair zone, via a process which may be similar t…

0106 biological sciencesBiomineralizationfood.ingredient010603 evolutionary biology01 natural sciencesMineralization (biology)Epithelium03 medical and health scienceschemistry.chemical_compoundfoodMantle epitheliumGreen ormerAnimalsShell repair14. Life underwaterHaliotisPinctadaMantle (mollusc)[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsGastropodMicrostructureComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesWound HealingbiologyCell BiologyGeneral MedicineAnatomybiology.organism_classification[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterials[SDV.BA.ZI]Life Sciences [q-bio]/Animal biology/Invertebrate ZoologyKineticsCalcium carbonatechemistryBiophysicsMicroscopy Electron ScanningEastern oysterCalcium carbonateDevelopmental BiologyPinctadaBiomineralization
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Periphyton support for littoral secondary production in a highly humic boreal lake

2016

Steep stratification and poor light penetration in highly humic lakes typically restrict oxygenated littoral areas to narrow lake margins. However, in some instances, surrounding floating vegetation mats can sustain highly productive periphyton and more diverse invertebrate communities than pelagic areas. Little is known about how these littoral food webs function or the extent to which the pelagic and littoral food webs are coupled. We added 15N-labeled ammonium nitrate to the floating moss mat surrounding the littoral zone of Mekkojärvi, a small highly humic and fishless lake in southern Finland. Our goal was to increase the δ15N values of periphyton to investigate the diets of littoral i…

0106 biological sciencesC-13 ADDITIONPOLYHUMIC LAKEAquatic ScienceAQUATIC FOOD WEBSlittoral invertebrates010603 evolutionary biology01 natural sciencesbenthic algaeCARBONMETHANESTABLE-ISOTOPESECOSYSTEMSLittoral zonePeriphytonEcology Evolution Behavior and SystematicsInvertebrateIsotope analysisPerchEcologybiologyEcologystable-isotope analysis010604 marine biology & hydrobiologyPelagic zoneδ15Nisotope additionsbiology.organism_classificationBorealmethane-oxidizing bacteriaCONSUMER PRODUCTIONEnvironmental scienceta1181BENTHIC PATHWAYSTERRESTRIAL ORGANIC-MATTERFreshwater Science
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Fish introductions and light modulate food web fluxes in tropical streams: a whole-ecosystem experimental approach.

2016

Decades of ecological study have demonstrated the importance of top-down and bottom-up controls on food webs, yet few studies within this context have quantified the magnitude of energy and material fluxes at the whole-ecosystem scale. We examined top-down and bottom-up effects on food web fluxes using a field experiment that manipulated the presence of a consumer, the Trinidadian guppy Poecilia reticulata, and the production of basal resources by thinning the riparian forest canopy to increase incident light. To gauge the effects of these reach-scale manipulations on food web fluxes, we used a nitrogen (15 N) stable isotope tracer to compare basal resource treatments (thinned canopy vs. co…

0106 biological sciencesCanopyNeotropicsFood ChainLightPopulation DynamicsContext (language use)010603 evolutionary biology01 natural sciencesRiverstrophic linkagesAnimalsEcosystemTrinidad guppyBiomassEcology Evolution Behavior and Systematicstop-down and bottom-up effectsTrophic levelTropical ClimateDetritusbiologyEcology010604 marine biology & hydrobiologynitrogen fluxFishesWaterbiology.organism_classificationFood webGuppyreach-scale experimentstable isotope tracersTrinidad and TobagoBenthic zoneta1181stream food webbenthic macroinvertebratesprimary productionEcology
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Resource polymorphism in European whitefish: Analysis of fatty acid profiles provides more detailed evidence than traditional methods alone

2019

Published version, licensed CC BY-NC-ND 4.0. , available at: http://dx.doi.org/10.1371/journal.pone.0221338 Resource polymorphism—whereby ancestral generalist populations give rise to several specialised morphs along a resource gradient—is common where species colonise newly formed ecosystems. This phenomenon is particularly well documented in freshwater fish populations inhabiting postglacial lakes formed at the end of the last ice age. However, knowledge on how such differential exploitation of resources across contrasting habitats might be reflected in the biochemical compositions of diverging populations is still limited, though such patterns might be expected. Here, we aimed to assess …

0106 biological sciencesComposite ParticlesMarine and Aquatic SciencesPredationGeneralist and specialist species01 natural sciencesFood chainIsotopesvatsaFood Web StructurelakesMedicine and Health SciencesCoregonus albulaVDP::Mathematics and natural science: 400::Zoology and botany: 480::Marine biology: 497Trophic levelMultidisciplinaryEcologyfood.dishPhysicsStable IsotopesQStomachREukaryotafood web structureselkärangattomatGastrointestinal Contents6. Clean waterFood webTrophic InteractionsFreshwater FishCommunity Ecologyfreshwater fishVertebratesPhysical Sciencesresource polymorphismFreshwater fishMedicinepredationAnatomyNutritive ValueSalmonidaestomachResearch ArticleFreshwater EnvironmentsAtomsFAFood ChainSciencestable isotopesZoologyScandinavian and Nordic CountriesCoregonus lavaretusBiologyfatty acidsjärvet010603 evolutionary biologyfoodCoregonus lavaretusAnimals14. Life underwaterParticle PhysicsravintoketjutVDP::Landbruks- og Fiskerifag: 900::Fiskerifag: 920Coregonus albulatrophic interactionsEcological nicheisotoopit010604 marine biology & hydrobiologyEcology and Environmental SciencesOrganismsAquatic EnvironmentsBiology and Life SciencesFeeding BehaviorBodies of WaterVDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Marinbiologi: 497invertebratesbiology.organism_classificationInvertebratessaalistusGastrointestinal TractLakesFishEuropean whitefishsiikaEarth SciencesDigestive SystemravintoverkotPLOS ONE
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Resource Partitioning in Food, Space and Time between Arctic Charr (Salvelinus alpinus), Brown Trout (Salmo trutta) and European Whitefish (Coregonus…

2017

Arctic charr and European whitefish are considered to be strong competitors in lakes, with the latter usually being the superior species. However, high niche plasticity and lake morphometry may suggestively facilitate resource partitioning and coexistence between charr and whitefish. Here, we explore the trophic niche utilization (diet and habitat use) of charr and whitefish co-occurring with brown trout in the deep and oligotrophic Lake Fyresvatnet, southern Norway (59˚05’N, 8˚10’E). Using CPUE, stomach contents and stable isotope analyses, a distinct resource partitioning was revealed between brown trout and the other two species. Brown trout typically occupied the littoral zone, feeding …

0106 biological sciencesComposite ParticlesTroutlcsh:MedicineMarine and Aquatic Sciences01 natural sciencesBrown troutIsotopesVDP::Mathematics and natural science: 400::Zoology and botany: 480::Marine biology: 497Salmolcsh:ScienceMultidisciplinarybiologyfood.dishEcologyEcologyNorwayPhysicsStable IsotopescoexistenceFishesPlanktonGastrointestinal ContentsTrophic InteractionsrinnakkaiseloFreshwater FishArctic charrTroutCommunity EcologyOsteichthyesVertebratesPhysical SciencesFreshwater fishEcological NichesSalmonidaeResearch ArticleFreshwater EnvironmentsAtoms010603 evolutionary biologyZooplanktonfoodCoregonus lavaretusAnimalsProfundal zoneParticle PhysicsSalmonidaeEcosystemSalvelinus010604 marine biology & hydrobiologylcsh:REcology and Environmental SciencesOrganismsBiology and Life SciencesAquatic EnvironmentsFeeding BehaviorVDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Marinbiologi: 497Bodies of Waterbiology.organism_classificationInvertebratesLakesFoodEuropean whitefishEarth Sciencesta1181lcsh:Q
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Benchmark database for fine-grained image classification of benthic macroinvertebrates

2018

Managing the water quality of freshwaters is a crucial task worldwide. One of the most used methods to biomonitor water quality is to sample benthic macroinvertebrate communities, in particular to examine the presence and proportion of certain species. This paper presents a benchmark database for automatic visual classification methods to evaluate their ability for distinguishing visually similar categories of aquatic macroinvertebrate taxa. We make publicly available a new database, containing 64 types of freshwater macroinvertebrates, ranging in number of images per category from 7 to 577. The database is divided into three datasets, varying in number of categories (64, 29, and 9 categori…

0106 biological sciencesComputer scienceta1172Sample (statistics)monitorointi02 engineering and technologyneuroverkot01 natural sciencesConvolutional neural network0202 electrical engineering electronic engineering information engineeringkonenäköfine-grained classification14. Life underwaterFine-grained classificationInvertebrateta113ta112Contextual image classificationbusiness.industry010604 marine biology & hydrobiologyDeep learningConvolutional Neural NetworksBenchmark databasedeep learningPattern recognitionDeep learningselkärangattomatvedenlaatu6. Clean waterkoneoppiminenBenthic zoneBenthic macroinvertebratesbiomonitoringSignal ProcessingBiomonitoringta1181lajinmääritys020201 artificial intelligence & image processingComputer Vision and Pattern RecognitionArtificial intelligenceWater qualitybusinessbenthic macroinvertebrates
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Degradation in landscape matrix has diverse impacts on diversity in protected areas.

2017

Introduction: A main goal of protected areas is to maintain species diversity and the integrity of biological assemblages. Intensifying land use in the matrix surrounding protected areas creates a challenge for biodiversity conservation. Earlier studies have mainly focused on taxonomic diversity within protected areas. However, functional and especially phylogenetic diversities are less studied phenomena, especially with respect to the impacts of the matrix that surrounds protected areas. Phylogenetic diversity refers to the range of evolutionary lineages, the maintenance of which ensures that future evolutionary potential is safeguarded. Functional diversity refers to the range of ecologic…

0106 biological sciencesConservation geneticsConservation BiologyBiodiversitylcsh:MedicinemaankäyttöForestsAnimal Phylogenetics01 natural scienceslcsh:ScienceSpecies diversityConservation ScienceData ManagementMultidisciplinaryEcologyEcologyEukaryotaBiodiversityrespiratory systemta4112Terrestrial EnvironmentsPhylogeneticsGeographyHabitatVertebratesConservation GeneticsConservation geneticsResearch ArticleComputer and Information SciencesConservation of Natural ResourcesEcological MetricsForest managementAnimal phylogenetics010603 evolutionary biologyEcosystemsBirdssuojelualueetGeneticsAnimalsEcosystemEvolutionary SystematicsEcosystemTaxonomyEvolutionary BiologyLand use010604 marine biology & hydrobiologyEcology and Environmental Scienceslcsh:ROrganismsSpecies diversityland useBiology and Life SciencesSpecies Diversity15. Life on landbiodiversiteettiPhylogenetic diversity13. Climate actionConservation scienceAmniotesta1181lcsh:Qprotected areasZoologyhuman activitiesPLoS ONE
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Effects of changing climate on European stream invertebrate communities : A long-term data analysis

2018

Long-term observations on riverine benthic invertebrate communities enable assessments of the potential impacts of global change on stream ecosystems. Besides increasing average temperatures, many studies predict greater temperature extremes and intense precipitation events as a consequence of climate change. In this study we examined long-term observation data (10-32years) of 26 streams and rivers from four ecoregions in the European Long-Term Ecological Research (LTER) network, to investigate invertebrate community responses to changing climatic conditions. We used functional trait and multi-taxonomic analyses and combined examinations of general long-term changes in communities with deta…

0106 biological sciencesConservation of Natural ResourcesEnvironmental EngineeringClimate ChangeEcology (disciplines)ta1172010603 evolutionary biology01 natural sciencesRiversAnimalsEnvironmental ChemistryEcosystemWaste Management and DisposalEcosystemInvertebrateEcology010604 marine biology & hydrobiologyfungiTemperatureExtreme eventsGlobal changeInvertebratesPollutionEuropeBenthic zoneLong term dataEnvironmental scienceta1181sense organsIntroduced SpeciesBiologieScience of the Total Environment
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Ecomorphological inferences in early vertebrates: reconstructing Dunkleosteus terrelli (Arthrodira, Placodermi) caudal fin from palaeoecological data

2017

Our knowledge about the body morphology of many extinct early vertebrates is very limited, especially in regard to their post-thoracic region. The prompt disarticulation of the dermo-skeletal elements due to taphonomic processes and the lack of a well-ossified endoskeleton in a large number of groups hinder the preservation of complete specimens. Previous reconstructions of most early vertebrates known from partial remains have been wholly based on phylogenetically closely related taxa. However, body design of fishes is determined, to a large extent, by their swimming mode and feeding niche, making it possible to recognise different morphological traits that have evolved several times in no…

0106 biological sciencesDunkleosteus010506 paleontologyEcomorphologyEcomorphologylcsh:MedicinePaleontologia010603 evolutionary biology01 natural sciencesGeneral Biochemistry Genetics and Molecular BiologyEndoskeletonArthrodira0105 earth and related environmental sciencesMorphometricsGeometric morphometricsbiologyGeneral Neurosciencelcsh:RFish finGeneral Medicinebiology.organism_classificationCaudal finEarly vertebratesEvolutionary biologyPlacodermiSharksDunkleosteus terrelliAllometryGeneral Agricultural and Biological SciencesPeerJ
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