Search results for "WEB"

showing 10 items of 2018 documents

Guano-Derived Nutrient Subsidies Drive Food Web Structure in Coastal Ponds.

2016

A stable isotope study was carried out seasonally in three coastal ponds (Marinello system, Italy) affected by different gull guano input to investigate the effect of nutrient subsidies on food web structure and dynamics. A marked 15N enrichment occurred in the pond receiving the highest guano input, indicating that gull-derived fertilization (guanotrophication) had a strong localised effect and flowed across trophic levels. The main food web response to guanotrophication was an overall erosion of the benthic pathway in favour of the planktonic. Subsidized primary consumers, mostly deposit feeders, switched their diet according to organic matter source availability. Secondary consumers and,…

0106 biological sciencesPhysiologyMarine and Aquatic Scienceslcsh:Medicine01 natural sciencesCharadriiformesFood chainIsotopescoastal pondsFood Web StructureMedicine and Health Scienceslcsh:ScienceTrophic levelMultidisciplinaryEcologyfood webEcologyConsumerFishesFood webSeabirdsGullsCommunity EcologyItalyBenthic zoneVertebratesGuanoSeasonsResearch ArticleFood Chainguano; food web; benthos; mixing model; isotope; coastal pondsbentho010603 evolutionary biologyBirdsAnimalsEcosystemguanoPondsisotopeEcosystemNutrition010604 marine biology & hydrobiologyEcology and Environmental Sciencesfungilcsh:RFood ConsumptionOrganismsDetritivoreBiology and Life SciencesNutrientsBodies of WaterModels Theoreticalmixing modelInvertebratesDietFisheryFoodEarth SciencesEnvironmental sciencelcsh:QPhysiological ProcessesPLoS ONE
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An Empirical Evaluation of the Utility of Convex Hull and Standard Ellipse Areas for Assessing Population Niche Widths from Stable Isotope Data

2013

Stable isotope analyses are increasingly employed to characterise population niche widths. The convex hull area (TA) in a δ¹³C–δ¹⁵N biplot has been used as a measure of isotopic niche width, but concerns exist over its dependence on sample size and associated difficulties in among-population comparisons. Recently a more robust method was proposed for estimating and comparing isotopic niche widths using standard ellipse areas (SEA), but this approach has yet to be tested with empirical stable isotope data. The two methods measure different kind of isotopic niche areas, but both are now widely used to characterise isotopic niche widths of populations. We used simulated data and an extensive e…

0106 biological sciencesPopulation Dynamicslcsh:MedicinePopulation Modeling01 natural sciencesTheoretical EcologyFood Web StructureStatisticsRange (statistics)lcsh:ScienceFreshwater EcologyCarbon Isotopeseducation.field_of_studyMultidisciplinaryEcologyδ13CEcologyStable isotope ratioStatisticsFishesBiogeochemistryisotopic nicheTrophic Interactionstrophic nicheCommunity Ecologyconvex hullResearch ArticlePopulationNichestable isotopesBiostatistics010603 evolutionary biologyNiche ConstructionNormal distributionBayesian ellipse areavakaat isotoopitAnimals14. Life underwaterStatistical MethodseducationBiologyEcological nicheNitrogen Isotopes010604 marine biology & hydrobiologylcsh:RComputational BiologySpecies InteractionsSample size determinationSample SizeravintolokeroEnvironmental scienceta1181lcsh:QPopulation EcologyEcosystem ModelingMathematicsPLOS ONE
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The role of fish life histories in allometrically scaled food‐web dynamics

2019

Body size determines key ecological and evolutionary processes of organisms. Therefore, organisms undergo extensive shifts in resources, competitors, and predators as they grow in body size. While empirical and theoretical evidence show that these size‐dependent ontogenetic shifts vastly influence the structure and dynamics of populations, theory on how those ontogenetic shifts affect the structure and dynamics of ecological networks is still virtually absent. Here, we expand the Allometric Trophic Network (ATN) theory in the context of aquatic food webs to incorporate size‐structure in the population dynamics of fish species. We do this by modifying a food web generating algorithm, the nic…

0106 biological sciencesPopulationContext (language use)Biology010603 evolutionary biology01 natural sciences03 medical and health sciencesniche modellcsh:QH540-549.5Ecosystem14. Life underwatereducationEcology Evolution Behavior and SystematicsbioenergetiikkaOriginal Research030304 developmental biologyNature and Landscape ConservationTrophic levelaquatic ecosystemsEcological stability0303 health scienceseducation.field_of_studyBiomass (ecology)bioenergetics modelEcologyEcologyvesiekosysteemitkalat (eläimet)Food webEcological networkta1181lcsh:Ecologybody sizelife historiesravintoverkotEcology and Evolution
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The gypsy database (GyDB) of mobile genetic elements: release 2.0

2011

This article introduces the second release of the Gypsy Database of Mobile Genetic Elements (GyDB 2.0): a research project devoted to the evolutionary dynamics of viruses and transposable elements based on their phylogenetic classification (per lineage and protein domain). The Gypsy Database (GyDB) is a long-term project that is continuously progressing, and that owing to the high molecular diversity of mobile elements requires to be completed in several stages. GyDB 2.0 has been powered with a wiki to allow other researchers participate in the project. The current database stage and scope are long terminal repeats (LTR) retroelements and relatives. GyDB 2.0 is an update based on the analys…

0106 biological sciencesProtein domainretroelementsLineage (evolution)[SDV]Life Sciences [q-bio]Retroviridae ProteinsCaulimoviridaeEukaryote evolutioncomputer.software_genrephylogeny01 natural sciencesDatabases GeneticRefSeqPhylogenyPriority journalbase de données0303 health sciencesRetrovirusPhylogenetic treeDatabaseSequence analysisdatabases geneticArticlesClassificationChemistryGenetic lineRetroelementsGenetic databaseComputer programBiologyArticleMobile genetic element03 medical and health sciencesLong terminal repeatWeb pagephylogénieVirus proteinGeneticsLife Science[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyAccess to informationTransposon030304 developmental biologyretroelements;phylogeny;software;terminal repeat sequences;databases geneticHidden Markov modelCauliflower mosaic virusCaulimovirussoftwareRetroposonTerminal Repeat SequencesDNA structureInterspersed Repetitive Sequencesterminal repeat sequencesNonhumanRetroviridaeData analysis softwareGenetic variabilityMobile genetic elementscomputerLENGUAJES Y SISTEMAS INFORMATICOSSoftware010606 plant biology & botanyPhylogenetic nomenclaturePhylogenetic tree
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Ecological dependencies make remote reef fish communities most vulnerable to coral loss

2021

Ecosystems face both local hazards, such as over-exploitation, and global hazards, such as climate change. Since the impact of local hazards attenuates with distance from humans, local extinction risk should decrease with remoteness, making faraway areas safe havens for biodiversity. However, isolation and reduced anthropogenic disturbance may increase ecological specialization in remote communities, and hence their vulnerability to secondary effects of diversity loss propagating through networks of interacting species. We show this to be true for reef fish communities across the globe. An increase in fish-coral dependency with the distance of coral reefs from human settlements, paired with…

0106 biological sciencesRichnessconservation biologyekologiset verkostotGeneral Physics and Astronomy01 natural sciencesConservation of Natural ResourceAnthropogenic EffectmeriekologiaPatterns0303 health sciencesDiversityMultidisciplinaryConservation biologyCoral ReefsAnthropogenic EffectsQClimate-change ecologyFishesBiodiversityAnthozoaHabitat1181 Ecology evolutionary biologyCoral ReefHumanclimate-change ecologyConservation of Natural Resources[SDE.MCG]Environmental Sciences/Global ChangesScienceClimate ChangeBiotic interactions010603 evolutionary biologyGeneral Biochemistry Genetics and Molecular BiologyArticlekoralliriutat03 medical and health sciencesAnimals; Anthozoa; Anthropogenic Effects; Biodiversity; Climate Change; Conservation of Natural Resources; Coral Bleaching; Fishes; Humans; Spatial Analysis; Coral ReefsFood-webAnimalsHumansecological networks14. Life underwater030304 developmental biologySpatial AnalysisCoral BleachingAnimalkalakannatGeneral ChemistryDisturbanceSpatial Analysiilmastonmuutokset15. Life on landbiodiversiteetti13. Climate actionEcological networks[SDE.BE]Environmental Sciences/Biodiversity and EcologyFisheNature Communications
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Trophic flexibility of the Atlantic blue crab Callinectes sapidus in invaded coastal systems of the Apulia region (SE Italy): A stable isotope analys…

2017

Abstract The Atlantic blue crab Callinectes sapidus is recognized as an Invasive Alien Species in the Mediterranean Sea. However, its trophic role and feeding flexibility in invaded benthic food webs have been addressed only recently. Here, field samplings were conducted in winter and summer in five coastal systems of the Apulia region (SE Italy), three located on the Ionian Sea (Mar Piccolo, Torre Colimena, and Spunderati) and two on the Adriatic Sea (Acquatina and Alimini Grande). Captured blue crabs were weighed and had their δ 13 C and δ 15 N isotopic signatures measured; their trophic level (TL) was estimated using the mussel Mytilus galloprovincialis as isotopic baseline. C. sapidus a…

0106 biological sciencesSettore BIO/07 - EcologiaCallinectesPopulationCallinectes sapiduBiologyAquatic ScienceOceanography010603 evolutionary biology01 natural sciencesTrophic levelOntogenetic diet shiftMediterranean seaeducationIsotope analysisTrophic leveleducation.field_of_studyEcology010604 marine biology & hydrobiologyInvasive specieFood webbiology.organism_classificationFood webOceanographyBenthic zonetrophic level food web invasive species ontogenetic diet shift Callinectes sapidusEnergy source
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The trophic position of the Atlantic blue crab Callinectes sapidus Rathbun 1896 in the food web of Parila Lagoon (South Eastern Adriatic, Croatia): A…

2016

The Atlantic blue crab Callinectes sapidus is to date widely distributed in the Mediterranean Sea, where is recognized as an Invasive Alien Species. Noticeably, while records of its occurrence are increasing, quantitative information on its functional role in the benthic food webs of invaded coastal habitats are scarce. Here, carbon and nitrogen isotopic signatures were measured in C. sapidus and other representative taxa of the benthic flora and fauna sampled in summer in the Parila Lagoon, a coastal basin located in the Neretva River estuary area (Croatia). d 15 N values of individual blue crab specimens were used to calculate their trophic position (TP) , using the filter feeder mussel M…

0106 biological sciencesSettore BIO/07 - EcologiaEnvironmental EngineeringCallinectesFaunaPopulationGobius nigerCallinectes sapiduAquatic ScienceOceanography010603 evolutionary biology01 natural scienceslcsh:Aquaculture. Fisheries. Anglinginvasive speciesTrophic levelOntogenetic diet shiftInvasive species Callinectes sapidus food web trophic level ontogenetic diet shifteducationEcology Evolution Behavior and SystematicsTrophic levellcsh:SH1-691ontogenetic diet shift.education.field_of_studybiologyEcology010604 marine biology & hydrobiologyFilter feederInvasive specieFood webinvasive species Callinectes sapidus food web trophic level ontogenetic diet shiftbiology.organism_classificationFood webFisheryCallInectes sapidusBenthic zoneCallInectes sapidus food web trophic level ontogenetic diet shift.
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Carbon and nitrogen stable isotopic inventory of the most abundant demersal fish captured by benthic gears in southwestern Iceland (North Atlantic)

2009

International audience; Stable isotopes (δC and δN) were used to examine the origin of organic matter for the most representative demersal species of the SW Icelandic fishery, accounting for over 70% of landings of those species in the North Atlantic. Samples were collected during a 2-week period in early September 2004 from landings and directly during fishing cruises. Stable isotopes showed that particulate organic matter and sedimentary organic matter were at the base of the food web and appeared to fill two different compartments: the pelagic and the benthic. The pelagic realm was composed of only capelin and sandeel; krill and redfish occupied an intermediate position between pelagic a…

0106 biological sciencesSettore BIO/07 - EcologiaRedfishIcelandAquatic ScienceOceanography010603 evolutionary biology01 natural sciencesDemersal zoneDemersal fish14. Life underwaterDemersal fishbiology010604 marine biology & hydrobiologyCapelinNorth AtlanticPelagic zoneFood webHaddockδ15Nbiology.organism_classificationStable isotopeFisheryOceanographyBenthic zoneEnvironmental science
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Resistance of seagrass habitats to ocean acidification via altered interactions in a tri-trophic chain

2020

Despite the wide knowledge about prevalent effects of ocean acidification on single species, the consequences on species interactions that may promote or prevent habitat shifts are still poorly understood. Using natural CO2 vents, we investigated changes in a key tri-trophic chain embedded within all its natural complexity in seagrass systems. We found that seagrass habitats remain stable at vents despite the changes in their tri-trophic components. Under high pCO2, the feeding of a key herbivore (sea urchin) on a less palatable seagrass and its associated epiphytes decreased, whereas the feeding on higher-palatable green algae increased. We also observed a doubled density of a predatory wr…

0106 biological sciencesSettore BIO/07 - EcologiaStable isotope analysis010504 meteorology & atmospheric sciencesEcosystem ecologyOceans and Seaslcsh:Medicineocean acidification010603 evolutionary biology01 natural sciencesArticlePredationEnvironmental impactHydrothermal Ventsstable isotopeAnimalsEcosystemSeawater14. Life underwaterHerbivorylcsh:ScienceEcosystem0105 earth and related environmental sciencesTrophic levelCO2 ventMarine biologyHerbivoreMultidisciplinaryAlismatalesbiologyfood webEcologyClimate-change ecologyfungilcsh:RFishesOcean acidification15. Life on landHydrogen-Ion Concentrationbiology.organism_classificationSeagrassHabitat destructionHabitat13. Climate actionSea UrchinsEnvironmental sciencelcsh:Q
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Role of Soil Organisms in the Maintenance of Species-Rich Seminatural Grasslands through Mowing

2009

To preserve species-rich grasslands, management practices such as mowing are often required. Mowing is known to promote aboveground conditions that help to maintain plant species richness, but whether belowground effects are important as well is not known. We hypothesized that if mowing decreases belowground carbon transfer by reducing root mass, this will reduce the abundance and activity of soil decomposers and lead to diminished nutrient availability in soil. In grasslands, this would provide a means to mitigate the negative effects of nitrogen enrichment on plant species richness. We established experimental plots on grassland with one-third of plots growing untouched, one-third mowed o…

0106 biological sciencesSoil biologyGrowing seasoncomplex mixtures010603 evolutionary biology01 natural sciencesGrasslandDecomposerSoil food webEcology Evolution Behavior and SystematicsNature and Landscape Conservation2. Zero hungergeographygeography.geographical_feature_categoryEcologyEcologyfood and beveragesSpecies diversity04 agricultural and veterinary sciencesSoil carbon15. Life on landAgronomy040103 agronomy & agriculture0401 agriculture forestry and fisheriesEnvironmental scienceSpecies richnessRestoration Ecology
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