Search results for "alanine"

showing 10 items of 499 documents

CCDC 1035539: Experimental Crystal Structure Determination

2014

Related Article: P. Lenartowicz, M. Makowski, B. Zarychta, K. Ejsmont|2014|Acta Crystallogr.,Sect.E:Struct.Rep.Online|70|596|doi:10.1107/S1600536814025677

Space GroupCrystallographyN-(t-butoxycarbonyl)glycyl-(Z)-beta-bromo-dehydroalanine methyl esterCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 862035: Experimental Crystal Structure Determination

2017

Related Article: Dawid Siodłak, Agnieszka Macedowska-Capiga, Małgorzata A. Broda, Anna E. Kozioł, Tadeusz Lis|2012|Biopolymers|98|466|doi:10.1002/bip.22082

Space GroupCrystallographyN-acetyl-N-methyl-(E)-dehydrophenylalanine N'-methylamideCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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CCDC 192132: Experimental Crystal Structure Determination

2003

Related Article: B.Rzeszotarska, D.Siodlak, M.A.Broda, I.Dybala, A.E.Koziol|2002|J.Pept.Res.|59|79|doi:10.1034/j.1399-3011.2002.10951.x

Space GroupCrystallographyN-acetyl-alphabeta-dehydroalanine N'-dimethylamideCrystal SystemCrystal StructureCell ParametersExperimental 3D Coordinates
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Pyrrolomycins as antimicrobial agents. Microwave-assisted organic synthesis and insights into their antimicrobial mechanism of action

2019

Abstract New compounds able to counteract staphylococcal biofilm formation are needed. In this study we investigate the mechanism of action of pyrrolomycins, whose potential as antimicrobial agents has been demonstrated. We performed a new efficient and easy method to use microwave organic synthesis suitable for obtaining pyrrolomycins in good yields and in suitable amount for their in vitro in-depth investigation. We evaluate the inhibitory activity towards Sortase A (SrtA), a transpeptidase responsible for covalent anchoring in Gram-positive peptidoglycan of many surface proteins involved in adhesion and in biofilm formation. All compounds show a good inhibitory activity toward SrtA, havi…

Staphylococcus aureusClinical BiochemistryPharmaceutical ScienceMicrobial Sensitivity Testsmedicine.disease_causeSettore BIO/19 - Microbiologia Generale01 natural sciencesBiochemistrychemistry.chemical_compoundBacterial ProteinsDrug DiscoverymedicinePyrrolesEnzyme InhibitorsMicrowavesMolecular BiologyEnzyme Assays010405 organic chemistryChemistryOrganic ChemistryBiofilmN-Acetylmuramoyl-L-alanine AmidaseAntimicrobialAminoacyltransferasesAntimicrobial resistance Pyrrolomycins Sortase A Staphylococcus aureus In-silico docking studies MAOS Pharmacokinetics studies Murein hydrolase activitySettore CHIM/08 - Chimica Farmaceutica0104 chemical sciencesAnti-Bacterial AgentsMolecular Docking Simulation010404 medicinal & biomolecular chemistryCysteine EndopeptidasesBiochemistryMechanism of actionDocking (molecular)Staphylococcus aureusSettore CHIM/03 - Chimica Generale E InorganicaSortase ABiofilmsPseudomonas aeruginosaMolecular MedicineOrganic synthesisPeptidoglycanmedicine.symptom
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Differences in metabolic profiles of planktonic and biofilm cells in Staphylococcus aureus - (1)H Nuclear Magnetic Resonance search for candidate bio…

2013

Staphylococcus aureus is responsible for many types of infections related to biofilm presence. As the early diagnostics remains the best option for prevention of biofilm infections, the aim of the work presented was to search for differences in metabolite patterns of S. aureus ATCC6538 biofilm vs. free-swimming S. aureus planktonic forms. For this purpose, Nuclear Magnetic Resonance (NMR) spectroscopy was applied. Data obtained were supported by means of Scanning Electron Microscopy, quantitative cultures and X-ray computed microtomography. Metabolic trends accompanying S. aureus biofilm formation were found using Principal Component Analysis (PCA). Levels of isoleucine, alanine and 2,3-but…

Staphylococcus aureusMagnetic Resonance SpectroscopyMetaboliteBiologymedicine.disease_causeGeneral Biochemistry Genetics and Molecular BiologyMicrobiologychemistry.chemical_compoundMetabolomicsNuclear magnetic resonancemedicineMetabolomeIsoleucineButylene GlycolsRadioisotopesAlanineBiofilmNuclear magnetic resonance spectroscopyStaphylococcal InfectionsBiochemistrychemistryStaphylococcus aureusBiofilmsMetabolomeOsmoprotectantIsoleucineTomography X-Ray ComputedBiomarkersHydrogenActa Biochimica Polonica
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Crystal structure of N-(tert-butoxycarbonyl)phenylalanyldehydroalanine isopropyl ester (Boc–Phe–ΔAla–OiPr)

2014

In the crystal structure of the de­hydro­dipeptide (Boc-Phe-ΔAla-OiPr), the mol­ecule has a trans configuration of the N-methyl­amide group. Its geometry is different from saturated peptides but is in excellent agreement with other de­hydro­alanine compounds. In the crystal, an N—H⋯O hydrogen bond links the mol­ecules in a herringbone packing arrangement.

Steric effectsde­hydro­alaninecrystal structurede­hydro peptidesCrystal structureResearch Communicationslcsh:Chemistrychemistry.chemical_compoundDehydroalanineαβ-dehydroamino acidsPeptide bondMoietyGeneral Materials ScienceHydrogen bond[alpha]General Chemistrydehydroalaninedehydro peptidesCondensed Matter Physicsherringbone packing[beta]-de­hydro­amino acidsCrystallographyMolecular geometrychemistrylcsh:QD1-999αβ-de­hydro­amino acidsIsopropylActa Crystallographica Section E
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Surface-exposed Amino Acid Residues of HPV16 L1 Protein Mediating Interaction with Cell Surface Heparan Sulfate

2007

Efficient infection of cells by human papillomaviruses (HPVs) and pseudovirions requires primary interaction with cell surface proteoglycans with apparent preference for species carrying heparan sulfate (HS) side chains. To identify residues contributing to virus/cell interaction, we performed point mutational analysis of the HPV16 major capsid protein, L1, targeting surface-exposed amino acid residues. Replacement of lysine residues 278, 356, or 361 for alanine reduced cell binding and infectivity of pseudovirions. Various combinations of these amino acid exchanges further decreased cell attachment and infectivity with residual infectivity of less than 5% for the triple mutant, suggesting …

Surface PropertiesLysinePlasma protein bindingBiochemistryAntibodieschemistry.chemical_compoundCapsidChlorocebus aethiopsAnimalsHumansComputer SimulationMolecular Biologychemistry.chemical_classificationAlanineInfectivityHeparinLysineCell MembraneCapsomereOncogene Proteins ViralCell BiologyHeparan sulfateAmino acidchemistryBiochemistryCapsidMutagenesisCOS CellsCapsid ProteinsHeparitin SulfateProtein BindingJournal of Biological Chemistry
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ALANINE/EPR DOSIMETRY APPLIED TO THE VALIDATION OF A TOTAL BODY IRRADIATION (TBI) PROTOCOL AND TREATMENT PLANNING DOSE CALCULATION USING A HUMANOID P…

2015

L’irraggiamento a corpo intero (Total Body Irradiation - TBI) è una tecnica di radioterapia oncologica di largo impiego nella clinica ematoncologica nell’ambito del trattamento di pazienti avviati al trapianto di midollo osseo o al trapianto di cellule staminali periferiche. La TBI da una parte permette di sopprimere il sistema immunitario del ricevente per prevenire il rigetto del midollo del donatore ed eliminare le cellule neoplastiche residue dai trattamenti chemioterapici. In genere, la modalità di somministrazione della TBI prevede irraggiamenti in 3 giorni consecutivi con un bi-frazionamento giornaliero (2 Gy, 2 volte al giorno con intervallo minimo di 6 ore tra le sedute, per 3 gior…

TBI Alanine ESR EPR Gamma photonsSettore FIS/01 - Fisica SperimentaleSettore MED/36 - Diagnostica Per Immagini E RadioterapiaSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
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EPR DOSIMETRY WITH ALANINE FOR TOTAL BODY IRRADIATION USING AN ANTHROPOMORPHIC PHANTOM

2016

The Total Body Irradiation (TBI) is a radiation therapy technique widely used in clinical hemato-oncological treatment of patients that underwent bone marrow transplantation or peripheral stem cell transplantation. Typically, the administration of TBI treatment provides irradiations in 3 consecu-tive days with a double daily fractionation, although other dose fractionation modes have been widely adopted in the clinic procedures. Although this tech-nique allows to irradiate the whole body from head to toes, it has some limitations such as the lack of homogeneity of the dose distribution (which can show varia-tions of 20% in the different areas), irradiation of critical organs such as lungs, …

TBI ESR EPR alanine dosimetrySettore FIS/01 - Fisica SperimentaleSettore FIS/07 - Fisica Applicata(Beni Culturali Ambientali Biol.e Medicin)
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Effect of a novel chemical mixture on senescence processes and plant--fungus interaction in Solanaceae plants.

2001

The effects of exogenous application of a chemical mixture consisting of adipic acid monoethyl ester, furfurylamine, and 1,2,3,4-tetra-O-acetyl-beta-D-glucopyranose (FGA) on various metabolic pathways and the plant-fungus interaction have been studied in Solanaceae plants. Tomato and pepper plants were sprayed with the FGA mixture, and different biochemical parameters such as gas exchange, chlorophyll concentration, protein, cell wall sugar and phenolics contents, and peroxidase and phenylalanine ammonia lyase (PAL) activities were measured. FGA-treated plants showed, in general, an increase in cell wall sugar content and decreases in the chlorophyll degrading rate and the peroxidase activi…

Time FactorsAdipatesPhenylalanine ammonia-lyaseCell wallchemistry.chemical_compoundGlucosidesPlant Growth RegulatorsPhenolsSugarFuransSolanaceaebiologyfungifood and beveragesEstersGeneral Chemistrybiology.organism_classificationFungicides IndustrialMetabolic pathwaychemistryBiochemistryChlorophyllbiology.proteinGeneral Agricultural and Biological SciencesSolanaceaePeroxidaseJournal of agricultural and food chemistry
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