Search results for "biomineralization"

showing 10 items of 131 documents

The skeleton of the staghorn coral Acropora millepora: molecular and structural characterization.

2014

15 pages; International audience; The scleractinian coral Acropora millepora is one of the most studied species from the Great Barrier Reef. This species has been used to understand evolutionary, immune and developmental processes in cnidarians. It has also been subject of several ecological studies in order to elucidate reef responses to environmental changes such as temperature rise and ocean acidification (OA). In these contexts, several nucleic acid resources were made available. When combined to a recent proteomic analysis of the coral skeletal organic matrix (SOM), they enabled the identification of several skeletal matrix proteins, making A. millepora into an emerging model for biomi…

ProteomicsBiomineralizationPhysiologyCoralCell Membraneslcsh:MedicineSpectrum Analysis RamanBiochemistryAcropora milleporaMaterials PhysicsSpectroscopy Fourier Transform Infraredcristallcsh:ScienceMicrostructurecorailAcetic AcidAminationExtracellular Matrix ProteinsMineralsMultidisciplinarybiologyEcologyMonosaccharidesMineralogyAnthozoaBiochemistryprotéineCoralsPhysical SciencesCellular Structures and OrganellesCrystallizationcalciteResearch ArticleMaterials ScienceProtein domainmatrice extracellulaireMarine BiologyBone and BonesCalcium CarbonateAnthozoamonosaccharideAnimals14. Life underwater[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsIntegrin bindingStaghorn corallcsh:RBiology and Life SciencesProteinsMembrane ProteinsCell Biology[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterialsbiology.organism_classificationTransmembrane ProteinsSolubilityEarth Scienceslcsh:QPhysiological ProcessesGelsFunction (biology)Biomineralization
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Proteomics of CaCO3 biomineral-associated proteins: how to properly address their analysis.

2013

8 pages; International audience; In a recent editorial (Proc. Natl. Acad. Sci., 2013 110, E2144-E2146) and elsewhere, questions have been raised regarding the experimental practices in relation to the proteomic analysis of organic matrices associated to the biomineralized CaCO3 skeletons of metazoans such as molluscan shells and coral skeletons. Indeed, although the use of new high sensitivity MS technology potentially allows to identify a greater number of proteins, it is also equally (or even more) sensitive to contamination of residual proteins from soft tissues, which are in close contact with the biomineral. Based on our own past and present experimental know-how-observations that are …

ProteomicsBiomineralizationSample preparationNanotechnologyComputational biologyBiologyProteomicsBiochemistryCalcium Carbonate03 medical and health sciencesCalcification PhysiologicBleaching treatmentAnimal Shells[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]AnimalsCalcifying extracellular matrix[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular BiologyClose contact030304 developmental biology0303 health sciences030302 biochemistry & molecular biologyProteinsAnimal proteomics[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsAnthozoaExtracellular Matrix[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]MolluscaProtein identificationProtein identificationBiomineralization
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The test skeletal matrix of the black sea urchin Arbacia lixula

2015

11 pages; International audience; In the field of biomineralization, the past decade has been marked by the increasing use of high throughput techniques, i.e. proteomics, for identifying in one shot the protein content of complex macromolecular mixtures extracted from mineralized tissues. Although crowned with success, this approach has been restricted so far to a limited set of key-organisms, such as the purple sea urchin Strongylocentrotus purpuratus, the pearl oyster or the abalone, leaving in the shadow non-model organisms. As a consequence, it is still unknown to what extent the calcifying repertoire varies, from group to group, at high (phylum, class), median (order, family) or low (g…

ProteomicsBiomineralizationSea urchinAbalonePhysiologyMolecular Sequence DataBiologyBiochemistryMass SpectrometryParacentrotus lividusCalcium Carbonate[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]biology.animalSpectroscopy Fourier Transform InfraredGeneticsAnimalsAmino Acid Sequence14. Life underwaterTaxonomic rank[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular BiologySea urchinArbacia lixulaMineralsurogenital systemEcologyPhylumMonosaccharidesArbacioida[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/Biomaterialsbiology.organism_classificationArbacioida orderStrongylocentrotus purpuratus[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry Molecular Biology/Genomics [q-bio.GN]Evolutionary biologySea Urchinsembryonic structuresMicroscopy Electron ScanningElectrophoresis Polyacrylamide GelOrganic matrixComparative Biochemistry and Physiology Part D: Genomics and Proteomics
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Nacre calcification in the freshwater mussel Unio pictorum: carbonic anhydrase activity and purification of a 95 kDa calcium-binding glycoprotein.

2008

9 pages; International audience; The formation of the molluscan shell is finely tuned by macromolecules of the shell organic matrix. Previous results have shown that the acid-soluble fraction of the nacre matrix of the freshwater paleoheterodont bivalve Unio pictorum shell displays a number of remarkable properties, such as calcium-binding activity, the presence of extensive glycosylations and the capacity to interfere at low concentration with in vitro calcium carbonate precipitation. Here we have found that the nacre-soluble matrix exhibits a carbonic anhydrase activity, an important function in calcification processes. This matrix is composed of three main proteinaceous discrete fraction…

ProteomicsCarbonateschemistry.chemical_elementFresh WaterCalciumBiochemistryMass Spectrometry03 medical and health scienceschemistry.chemical_compoundCalcification PhysiologicCalcium-binding proteinCarbonic anhydraseMollusc shellmedicineAnimalsGlycosyl[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyAmino Acid Sequence[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/BiomaterialsMolecular Biology[ SDV.BBM ] Life Sciences [q-bio]/Biochemistry Molecular BiologyCarbonic AnhydrasesGlycoproteins030304 developmental biologychemistry.chemical_classificationbiomineralization; mollusc shell nacre; carbonic anhydrase; 2-DE; two-dimensional electrophoresis; organic matrix0303 health sciencesbiologyCalcium-Binding Proteins030302 biochemistry & molecular biologyOrganic ChemistryUnio pictorumbiology.organism_classificationTrypsin[ SDV.IB.BIO ] Life Sciences [q-bio]/Bioengineering/BiomaterialsBivalviaEnzyme ActivationMolecular WeightSolubilitychemistryBiochemistryMicroscopy Electron Scanningbiology.proteinMolecular MedicineCalciumGlycoproteinGelsSequence Analysismedicine.drug
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Morphology of Sponge Spicules: Silicatein a Structural Protein for Bio-Silica Formation

2010

Most forms of multicellular life have developed a calcium-based skeleton, while only a few specialized organisms complement their body plan with silica, such as sponges (phylum Porifera). However, the way in which sponges synthesize their silica is exceptional. They use an enzyme, silicatein, for the polymerization/polycondensation of silica, and thereby form their highly resistant and stabile massive siliceous skeletal elements (spicules). During this biomineralization process (i.e., biosilicification), hydrated amorphous silica is deposited within highly specialized sponge cells, ultimately resulting in structures that range in size from micrometers to meters. This peculiar phenomenon has…

Scaffold proteinSpiculeMaterials sciencebiologyNanotechnologyCondensed Matter Physicsbiology.organism_classificationProtein filamentSpongeSponge spiculeChemical engineeringPolymerizationGeneral Materials ScienceBiomineralizationGalectinAdvanced Engineering Materials
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The role of the silicatein-alpha interactor silintaphin-1 in biomimetic biomineralization.

2008

Biosilicification in sponges is initiated by formation of proteinaceous filaments, predominantly consisting of silicateins. Silicateins enzymatically catalyze condensation of silica nanospheres, resulting in symmetric skeletal elements (spicules). In order to create tailored biosilica structures in biomimetic approaches it is mandatory to elucidate proteins that are fundamental for the assembly of filaments. Silintaphin-1 is a core component of modularized filaments and also part of a spicule-enfolding layer. It bears no resemblance to other proteins, except for the presence of an interaction domain that is fundamental for its function as scaffold/template. In the presence of silicatein sil…

ScaffoldMaterials scienceDNA ComplementaryMolecular Sequence DataSilicic AcidBiophysicsNanoparticleBioengineeringNanotechnologyPlasma protein bindingFerric CompoundsAntibodiesBiomaterialsSponge spiculeCalcification PhysiologicBiomimetic MaterialsTwo-Hybrid System TechniquesAnimalsRegenerationInteractorAmino Acid SequencebiologyCore componentProteinsbiology.organism_classificationEnzymes ImmobilizedCathepsinsRecombinant ProteinsProtein TransportMechanics of MaterialsCeramics and CompositesSuberitesSuberitesBiomineralizationProtein BindingBiomaterials
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A new printable and durable N,O-carboxymethyl chitosan–Ca2+–polyphosphate complex with morphogenetic activity

2015

Biomimetic materials have been gaining increasing importance in tissue engineering since they may provide regenerative alternatives to the use of autologous tissues for transplantation. In the present study, we applied for bioprinting of a functionalized three-dimensional template, N,O-carboxymethyl chitosan (N,O-CMC), mimicking the physiological extracellular matrix. This polymer, widely used in tissue engineering, has been provided with functional activity by integration of polyphosphate (polyP), an osteogenically acting natural polymer. The two polymers, N,O-CMC and polyP, are linked together via Ca2+ bridges. This N,O-CMC + polyP material was proven to be printable and durable. The N,O-…

ScaffoldMaterials sciencePolyphosphatetechnology industry and agricultureBiomedical Engineeringmacromolecular substancesGeneral ChemistryGeneral MedicineAnatomyTransplantationExtracellular matrixChitosanchemistry.chemical_compoundchemistryTissue engineeringBiophysicsGeneral Materials ScienceHybrid materialBiomineralizationJournal of Materials Chemistry B
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Acidic Monosaccharides become Incorporated into Calcite Single Crystals*.

2020

Streptococcus suis is an encapsulated bacterium and one of the most important swine pathogens and a zoonotic agent for which no effective vaccine exists. Bacterial capsular polysaccharides (CPSs) are poorly immunogenic, but anti-CPS antibodies are essential to the host defense against encapsulated bacteria. In addition to the previously known serotypes 2 and 14, that are non-immunogenic, we have recently purified and described the CPS structures for serotypes 1, 1/2, 3, 7, 8, and 9. Here, we aimed to elucidate how these new structurally diverse CPSs interact with the immune system to generate anti-CPS antibody responses. CPS-stimulated dendritic cells produced significant levels of C–C moti…

SerotypeChemokineSecondary infectionStreptococcus suisCrystal structure010402 general chemistry01 natural sciencesCatalysisMicrobiologyCalcium Carbonatechemistry.chemical_compound03 medical and health sciencesImmune systemMonosaccharideTitermax[SDV.IB.BIO]Life Sciences [q-bio]/Bioengineering/Biomaterials030304 developmental biologychemistry.chemical_classificationCalcite0303 health sciencesMineralsbiology010405 organic chemistryChemistryBiomoleculeOrganic Chemistrycrystal growthMonosaccharidesGeneral ChemistryPolymerbiology.organism_classificationdigestive system diseases3. Good health0104 chemical sciencesbioinspired synthesiX-ray diffractionCalcium carbonateChemical engineeringcarbohydratebiology.proteinAntibodyCrystallizationAcidsBacteriaBiomineralizationMacromoleculeChemistry (Weinheim an der Bergstrasse, Germany)
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Are control of extracellular acid-base balance and regulation of skeleton genes linked to resistance to ocean acidification in adult sea urchins?

2020

SCOPUS: ar.j

Settore BIO/07 - EcologiaCO2 ventsEnvironmental EngineeringClimate ChangeOceans and SeasMechanical propertiesAcid–base homeostasisEnvironnement et pollutionDICGene expressionExtracellularEnvironmental ChemistryAnimalsSeawaterWaste Management and DisposalGeneSkeletonCO2 ventAcid-Base EquilibriumResistance (ecology)ChemistryOcean acidificationOcean acidificationCarbon DioxideHydrogen-Ion ConcentrationbiomineralizationPollutionSkeleton (computer programming)adult sea urchinsCell biologyTechnologie de l'environnement contrôle de la pollutionqPCRSea UrchinsTraitement des déchetsGene expressionEchinodermsThe Science of the total environment
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Sponges (Porifera) as living metazoan witnesses from the Neoproterozoic: biomineralization and the concept of their evolutionary success

2010

Terra Nova, 22, 1–11, 2010 Abstract The emergence of the Metazoa can be dated back to the Neoproterozoic Era which comprises the Cryogenian Period during which two major glaciations occurred, the Sturtian and the Varanger-Marinoan. At that time, the phylum Porifera (sponges) evolved as the first animals and developed a hard skeleton. The two classes of siliceous sponges, the Hexactinellida and the Demospongiae, are already provided with the major genetic repertoire and gene regulatory networks that also exist in modern multicellular animals. Besides these metazoan innovations, the siliceous sponges display one autapomorphic character, silicatein, an enzyme which mediates bio-silica formatio…

Siliceous spongeAutapomorphyPhylum PoriferaEvolutionary biologyEcologyMulticellular animalsPeriod (geology)GeologyBurgess ShaleBiologyBiomineralizationTerra Nova
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