Search results for "buchnera"

showing 10 items of 61 documents

Molecular systematics of aphids (Homoptera: Aphididae): new insights from the long-wavelength opsin gene.

2004

Viviparous aphids (Aphididae) constitute a monophyletic group within the Homoptera with more than 4000 extant species worldwide but higher diversity in temperate regions. Several aspects of their biology account for attention paid to this group of insects. Their plant-sap-sucking way of feeding with many species transmitting viruses to crop plants has important implications on crop management strategies. Cyclical parthenogenesis associated in many groups to host alternation and elaborate polyphenisms is of special interests for evolutionists. Finally, the ancient association of most aphid species with intracellular endosymbiotic bacteria (Buchnera sp.) has also received much attention from …

AphidbiologyPhylogenetic treeBase SequenceEcologyRod OpsinsAphididaebiology.organism_classificationPolymerase Chain ReactionMonophylyEvolutionary biologyPhylogeneticsAphidsMolecular phylogeneticsGeneticsAnimalsCloning MolecularCladeBuchneraMolecular BiologyEcology Evolution Behavior and SystematicsPhylogenyDNA PrimersMolecular phylogenetics and evolution
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Wolbachia (alphaproteobacteria: rickettsiales) infections in isolated aphid populations from oceanic islands of the Azores archipelago: revisiting th…

2019

Aphids (Hemiptera: Aphididae) have provided a suitable model to study endosymbionts, their community, and dynamics since the discovery of the obligate endosymbiont Buchnera aphidicola in these organisms. In previous studies, Wolbachia was found in some aphid species. In the present study, we report the prevalence of Wolbachia in aphids sampled from a geographically isolated region (Azores Islands), aiming at a better understanding and characterization of the two newly reported supergroups, M and N. The description of the supergroup M was based on 16S rRNA as well as some protein-coding genes. However, the assignment of the supergroup N was according to 16S rRNA gene sequences of a very few …

Biology.Faculdade de Ciências da VidaAnimalsSymbiosisEcology Evolution Behavior and SystematicsAzoresAphidPhylogenetic analysisEcologyPhylogenetic treeEndosymbiosisfood and beveragesAphididaebiochemical phenomena metabolism and nutritionbiology.organism_classificationHemipteraEvolutionary biologyInsect ScienceAphidsWolbachiaBuchneraSupergroupProtein-coding genes and 16S rRNA genesHorizontal transmissionWolbachia
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Serratia symbiotica from the aphid Cinara cedri: a missing link from facultative to obligate insect endosymbiont.

2011

The genome sequencing of Buchnera aphidicola BCc from the aphid Cinara cedri, which is the smallest known Buchnera genome, revealed that this bacterium had lost its symbiotic role, as it was not able to synthesize tryptophan and riboflavin. Moreover, the biosynthesis of tryptophan is shared with the endosymbiont Serratia symbiotica SCc, which coexists with B. aphidicola in this aphid. The whole-genome sequencing of S. symbiotica SCc reveals an endosymbiont in a stage of genome reduction that is closer to an obligate endosymbiont, such as B. aphidicola from Acyrthosiphon pisum, than to another S. symbiotica, which is a facultative endosymbiont in this aphid, and presents much less gene decay…

Cancer ResearchSerratialcsh:QH426-470RiboflavinPseudogeneGenomeDNA sequencingBacterial ProteinsBuchneraEnterobacteriaceaePhylogeneticsBotanyGeneticsAnimalsAmino AcidsSymbiosisMolecular BiologyPhylogenyGenetics (clinical)Ecology Evolution Behavior and SystematicsGeneticsComparative genomicsObligatebiologyTryptophanbiology.organism_classificationBiological EvolutionAcyrthosiphon pisumlcsh:GeneticsAphidsBuchneraGenome BacterialMetabolic Networks and PathwaysPseudogenesPLoS Genetics
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Evolution of the leucine gene cluster in Buchnera aphidicola: insights from chromosomal versions of the cluster.

2004

ABSTRACT In Buchnera aphidicola strains associated with the aphid subfamilies Thelaxinae, Lachninae, Pterocommatinae, and Aphidinae, the four leucine genes ( leuA , - B , - C , and - D ) are located on a plasmid. However, these genes are located on the main chromosome in B. aphidicola strains associated with the subfamilies Pemphiginae and Chaitophorinae. The sequence of the chromosomal fragment containing the leucine cluster and flanking genes has different positions in the chromosome in B. aphidicola strains associated with three tribes of the subfamily Pemphiginae and one tribe of the subfamily Chaitophorinae. Due to the extreme gene order conservation of the B. aphidicola genomes, the v…

ChaitophorinaeSubfamilygenome sequenceGenetics and Molecular BiologyMicrobiologyGenomemolecular characterizationsymbiotic bacteriaPlasmidschizaphis-graminumBuchneraLeucinemitochondrial-dnaplasmidGene clusterMolecular BiologyGeneHeat-Shock ProteinsPhylogenyGeneticsRecombination GeneticBinding SitesbiologyEscherichia coli ProteinsChromosomeChromosomes Bacterialbiology.organism_classificationPRI Bioscienceaphidsendosymbiotic bacteriaMultigene Familyescherichia-coliBuchneraanthranilate synthase trpegPlasmidsJournal of bacteriology
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Chromosomal stasis versus plasmid plasticity in aphid endosymbiont Buchnera aphidicola.

2005

The study of three genomes of the aphid endosymbiont Buchnera aphidicola has revealed an extraordinary stasis: conservation of gene order and genetic composition of the chromosome, while the chromosome size and number of genes has reduced. The reduction in genome size appears to be ongoing since some lineages we now know to have even smaller chromosomes than the first B. aphidicola analysed. The current sequencing by our group of one of these smaller genomes with an estimated size of 450 kb, and its comparison with the other three available genomes provide insights into the nature of processes involved in shrinkage. We discuss whether B. aphidicola might be driven to extinction and be repla…

Comparative genomicsGeneticsAphidbiologyTryptophanChromosomeChromosomes Bacterialbiology.organism_classificationGenomeEvolution MolecularPlasmidBuchneraLeucineAphidsMultigene FamilyGeneticsAnimalsBuchneraSymbiosisGeneGenome sizeGenetics (clinical)PhylogenyPlasmidsHeredity
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Comparative Molecular Evolution of Primary (Buchnera) and Secondary Symbionts of Aphids Based on Two Protein-Coding Genes

2001

A+T content, phylogenetic relationships, codon usage, evolutionary rates, and ratio of synonymous versus non-synonymous substitutions have been studied in partial sequences of the atpD and aroQ/pheA genes of primary ( Buchnera) and secondary symbionts of aphids and a set of selected non-symbiotic bacteria, belonging to the five subdivisions of the Proteobacteria. Compared to the homologous genes of the last group, both genes belonging to Buchnera behave in a similar way, showing a higher A+T content, forming a monophyletic group, a loss in codon bias, especially in third base position, an evolutionary acceleration and an increase in the number of non-synonymous substitutions, confirming pre…

DNA BacterialBiologyEvolution MolecularMonophylyBuchneraMolecular evolutionProteobacteriaGeneticsAnimalsCodonSymbiosisMolecular BiologyGenePhylogenyEcology Evolution Behavior and SystematicsGeneticsBase CompositionPhylogenetic treeHost (biology)Sequence Analysis DNAbiochemical phenomena metabolism and nutritionbiology.organism_classificationAT Rich SequenceAphidsCodon usage biasProteobacteriaBuchneraJournal of Molecular Evolution
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The Evolutionary Fate of Nonfunctional DNA in the Bacterial Endosymbiont Buchnera aphidicola

2004

Reduction of the genome size in endosymbiotic bacteria is the main feature linked to the adaptation to a host-associated lifestyle. We have analyzed the fate of the nonfunctional DNA in Buchnera aphidicola, the primary endosymbiont of aphids. At least 164 gene losses took place during the recent evolution of three B. aphidicola strains, symbionts of the aphids Acyrthosiphon pisum (BAp), Schizaphis graminum (BSg), and Baizongia pistacia (BBp). A typical pattern starts with the inactivation of a gene, which produces a pseudogene, and is followed by the progressive loss of its DNA. Our results show that during the period from the separation of the Aphidinae and Pemphiginae lineages (86-164 MYA…

DNA BacterialGeneticsTime FactorsModels GeneticPseudogenemyrDNASequence Analysis DNABiologybiology.organism_classificationGenomeEvolution MolecularIntergenic regionBuchneraSpecies SpecificityEscherichia coliGeneticsBuchneraMolecular BiologyGeneGenome sizeGene DeletionGenome BacterialEcology Evolution Behavior and SystematicsGC-contentMolecular Biology and Evolution
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New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid…

2011

ABSTRACT The symbiotic association between aphids (Homoptera) and Buchnera aphidicola ( Gammaproteobacteria ) started about 100 to 200 million years ago. As a consequence of this relationship, the bacterial genome has undergone a prominent size reduction. The downsize genome process starts when the bacterium enters the host and will probably end with its extinction and replacement by another healthier bacterium or with the establishment of metabolic complementation between two or more bacteria. Nowadays, several complete genomes of Buchnera aphidicola from four different aphid species ( Acyrthosiphon pisum , Schizaphis graminum , Baizongia pistacea , and Cinara cedri ) have been fully seque…

DNA BacterialMolecular Sequence DataBacterial genome sizeApplied Microbiology and BiotechnologyGenomeEvolution MolecularBuchneraPhylogeneticsAnimalsEvolutionary and Genomic MicrobiologySymbiosisPhylogenyWhole genome sequencingGeneticsComparative genomicsEcologyPhylogenetic treebiologySequence Analysis DNAbiochemical phenomena metabolism and nutritionbiology.organism_classificationAcyrthosiphon pisumAphidsBuchneraGenome BacterialFood ScienceBiotechnologyApplied and Environmental Microbiology
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Comparative analysis of two genomic regions among four strains of Buchnera aphidicola, primary endosymbiont of aphids

2004

Preliminary analysis of two selected genomic regions of Buchnera aphidicola BCc, the primary endosymbiont of the cedar aphid Cinara cedri, has revealed a number of interesting features when compared with the corresponding homologous regions of the three B. aphidicola genomes previously sequenced, that are associated with different aphid species. Both regions exhibit a significant reduction in length and gene number in B. aphidicola BCc, as it could be expected since it possess the smallest bacterial genome. However, the observed genome reduction is not even in both regions, as it appears to be dependent on the nature of their gene content. The region fpr-trxA, that contains mainly metabolic…

DNA BacterialMolecular Sequence DataBacterial genome sizeBiologyGenomeIntergenic regionBuchneraSpecies SpecificityGeneticsHomologous chromosomeAnimalsORFSSymbiosisGeneGeneticsBase CompositionAphidChromosome MappingSequence Analysis DNAGeneral Medicinebiology.organism_classificationGenes BacterialAphidsDNA IntergenicBuchneraGenome Bacterial
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Molecular Systematics of Aphids and Their Primary Endosymbionts

2001

Abstract Aphids constitute a monophyletic group within the order Homoptera (i.e., superfamily Aphidoidea). The Aphidoidea originated in the Jurassic about 150 my ago from some aphidiform ancestor whose origin can be traced back to about 250 my ago. They exhibit a mutualistic association with intracellular bacteria ( Buchnera sp.) related to Escherichia coli. Buchnera is usually considered the aphids' primary endosymbiont. The association is obligate for both partners. The 16S rDNA-based phylogeny of Buchnera from four aphid families showed complete concordance with the morphology-based phylogeny of their aphid hosts, which pointed to a single original infection in a common ancestor of aphid…

DNA BacterialMolecular Sequence DataGenes InsectEvolution MolecularMonophylyBuchneraPhylogeneticsRNA Ribosomal 16SBotanyGeneticsAnimalsSymbiosisMolecular BiologyPhylogenyEcology Evolution Behavior and SystematicsAphidObligatebiologyfood and beveragesAphididaeDNASequence Analysis DNAbiochemical phenomena metabolism and nutritionbiology.organism_classificationProton-Translocating ATPasesSister groupGenes BacterialEvolutionary biologyAphidsMolecular phylogeneticsBuchneraMolecular Phylogenetics and Evolution
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