Search results for "cations"

showing 10 items of 10791 documents

Transient metazoan reefs in the aftermath of the end-Permian mass extinction

2011

5 pages; International audience; Recovery from the devastating Permian-Triassic mass extinction about 252 million years ago is usually assumed to have spanned the entire 5 million years of the Early Triassic epoch1,2. The post-crisis interval was characterized by large-scale fluctuations of the global carbon cycle and harsh marine conditions, including a combination of ocean acidification, euxinia, and fluctuating productivity3. During this interval, metazoan-dominated reefs are thought to have been replaced by microbial deposits that are considered the hallmark of the Early Triassic4-7. Here we use field and microscopic investigations to document Early Triassic bioaccumulations and reefs f…

010506 paleontologyEarly Triassic10125 Paleontological Institute and Museum[ SDU.STU.ST ] Sciences of the Universe [physics]/Earth Sciences/Stratigraphy010502 geochemistry & geophysics01 natural sciencesCarbon cyclePaleontology14. Life underwaterReefPermian–Triassic extinction event[ SDU.STU.PG ] Sciences of the Universe [physics]/Earth Sciences/Paleontology0105 earth and related environmental sciencesExtinction eventgeographygeography.geographical_feature_categoryExtinction1900 General Earth and Planetary SciencesfungiOcean acidificationsocial scienceshumanitiesOceanography560 Fossils & prehistoric life13. Climate actionBenthic zone[SDU.STU.ST]Sciences of the Universe [physics]/Earth Sciences/StratigraphyGeneral Earth and Planetary Sciences[SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontologygeographic locationsGeologyNature Geoscience
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The genomic history of the Iberian Peninsula over the past 8000 years

2019

We assembled genome-wide data from 271 ancient Iberians, of whom 176 are from the largely unsampled period after 2000 BCE, thereby providing a high-resolution time transect of the Iberian Peninsula. We document high genetic substructure between northwestern and southeastern hunter-gatherers before the spread of farming. We reveal sporadic contacts between Iberia and North Africa by ~2500 BCE and, by ~2000 BCE, the replacement of 40% of Iberia's ancestry and nearly 100% of its Y-chromosomes by people with Steppe ancestry. We show that, in the Iron Age, Steppe ancestry had spread not only into Indo-European-speaking regions but also into non-Indo-European-speaking ones, and we reveal that pre…

010506 paleontologyHumanidades::História e Arqueologia01 natural sciencesArticle03 medical and health sciencesAfrica NorthernPeninsulaPolitical scienceGeneticsHuman migrationHumansMigrationHistory Ancient030304 developmental biology0105 earth and related environmental sciences2. Zero hunger0303 health sciencesgeographyCiências Naturais::Ciências BiológicasScience & TechnologyMultidisciplinarygeography.geographical_feature_categoryChromosomes Human YPortugalHuman genomeGenome HumanExtramuralPrehistoriaAgricultureGenomicshumanitiesGene flowSpainHumanitiesgeographic locationsIberian Peninsula
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Uneven Data Quality and the Earliest Occupation of Europe—the Case of Untermassfeld (Germany)

2017

AbstractThe database regarding the earliest occupation of Europe has increased significantly in quantity and quality of data points over the last two decades, mainly through the addition of new sites as a result of long-term systematic excavations and large-scale prospections of Early and early Middle Pleistocene exposures. The site distribution pattern suggests an ephemeral presence of hominins in the south of Europe from around one million years ago, with occasional short northward expansions along the western coastal areas when temperate conditions permitted. From around 600,000-700,000 years ago Acheulean artefacts appear in Europe and somewhat later hominin presence seems to pick up, w…

010506 paleontologyProvenance060101 anthropologyEarly PleistocenePleistoceneEphemeral keyExcavation06 humanities and the arts01 natural sciencesArchaeologyPaleontologyGeographyData qualityPeriod (geology)Hominin dispersal ; Early Pleistocene ; Europe ; Bone modifications ; Lower Palaeolithic ; Pseudo-artefacts0601 history and archaeologyAcheulean0105 earth and related environmental sciencesJournal of Paleolithic Archaeology
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How ocean acidification can benefit calcifiers.

2017

Reduction in seawater pH due to rising levels of anthropogenic carbon dioxide (CO2) in the world's oceans is a major force set to shape the future of marine ecosystems and the ecological services they provide [1,2]. In particular, ocean acidification is predicted to have a detrimental effect on the physiology of calcifying organisms [3]. Yet, the indirect effects of ocean acidification on calcifying organisms, which may counter or exacerbate direct effects, is uncertain. Using volcanic CO2 vents, we tested the indirect effects of ocean acidification on a calcifying herbivore (gastropod) within the natural complexity of an ecological system. Contrary to predictions, the abundance of this cal…

0106 biological sciences010504 meteorology & atmospheric sciencesEnvironmental changeOceans and SeasGastropodaVolcanic EruptionsBiology01 natural sciencesGeneral Biochemistry Genetics and Molecular Biologychemistry.chemical_compoundAbundance (ecology)AnimalsMarine ecosystemEcosystemSeawater14. Life underwaterEcosystem0105 earth and related environmental sciencesBiomass (ecology)Biochemistry Genetics and Molecular Biology (all)Primary producersEcology010604 marine biology & hydrobiologyfungiOcean acidificationCarbon DioxideHydrogen-Ion ConcentrationAgricultural and Biological Sciences (all)chemistry13. Climate actionCarbon dioxideCalciumGeneral Agricultural and Biological SciencesAcidsgeographic locationsCurrent biology : CB
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Characterization of the Copper Transporters from Lotus spp. and Their Involvement under Flooding Conditions

2019

Forage legumes are an important livestock nutritional resource, which includes essential metals, such as copper. Particularly, the high prevalence of hypocuprosis causes important economic losses to Argentinian cattle agrosystems. Copper deficiency in cattle is partially due to its low content in forage produced by natural grassland, and is exacerbated by flooding conditions. Previous results indicated that incorporation of Lotus spp. into natural grassland increases forage nutritional quality, including higher copper levels. However, the biological processes and molecular mechanisms involved in copper uptake by Lotus spp. remain poorly understood. Here, we identify four genes that encode p…

0106 biological sciences0301 basic medicineBiologíalegumesLotusCOPPERFLOODING01 natural scienceslcsh:ChemistryCopper transportersProtein-fragment complementation assayCation Transport Proteinslcsh:QH301-705.5SpectroscopyPlant Proteinsbiologyfood and beveragesGeneral MedicinePhenotypeComputer Science ApplicationsLEGUMESSaccharomyces cerevisiaechemistry.chemical_elementCatalysisArticleInorganic Chemistry03 medical and health sciencesfloodingStress PhysiologicalFORAGEBotanymedicineCiencias AgrariasPhysical and Theoretical ChemistryMolecular BiologyGeneOrganic Chemistryfungiforagebiology.organism_classificationmedicine.disease//purl.org/becyt/ford/4.5 [https]CopperTRANSPORTERScopper transportersYeastFloods030104 developmental biologychemistrylcsh:Biology (General)lcsh:QD1-999CIENCIAS AGRÍCOLASLotusOtras Ciencias AgrícolasCopper deficiency//purl.org/becyt/ford/4 [https]Copper010606 plant biology & botanyInternational Journal of Molecular Sciences
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The long journey of Orthotrichum shevockii (Orthotrichaceae, Bryopsida): From California to Macaronesia

2019

Biogeography, systematics and taxonomy are complementary scientific disciplines. To understand a species' origin, migration routes, distribution and evolutionary history, it is first necessary to establish its taxonomic boundaries. Here, we use an integrative approach that takes advantage of complementary disciplines to resolve an intriguing scientific question. Populations of an unknown moss found in the Canary Islands (Tenerife Island) resembled two different Californian endemic species: Orthotrichum shevockii and O. kellmanii. To determine whether this moss belongs to either of these species and, if so, to explain its presence on this distant oceanic island, we combined the evaluation of…

0106 biological sciences0301 basic medicineLeavesPlant ScienceBryology01 natural sciencesGeographical locationsCaliforniaNonvascular PlantsPhylogenyData ManagementMultidisciplinaryPhylogenetic analysisbiologyPlant AnatomyQREukaryotaPhylogenetic AnalysisPlantsClassification3. Good healthPhylogeneticsPhylogeographyGeographyMedicineTaxonomy (biology)Research ArticleSystematicsComputer and Information SciencesScienceBiogeographyCanary Islands010603 evolutionary biologyEvolution Molecular03 medical and health sciencesOrthotrichumMossesEvolutionary SystematicsNonvascular plantsOrthotrichaceaeEndemismTaxonomyEvolutionary BiologyBotánicaOrganismsBiology and Life SciencesSequence Analysis DNA15. Life on landbiology.organism_classificationBryopsidaUnited States030104 developmental biologyTaxonSpainEvolutionary biologyAfricaNorth AmericaBiological dispersalPeople and places
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Phosphinotripeptidic Inhibitors of Leucylaminopeptidases

2021

Phosphinate pseudopeptide are analogs of peptides containing phosphinate moiety in a place of the amide bond. Due to this, the organophosphorus fragment resembles the tetrahedral transition state of the amide bond hydrolysis. Additionally, it is also capable of coordinating metal ions, for example, zinc or magnesium ions. These two properties of phosphinate pseudopeptides make them an ideal candidate for metal-related protease inhibitors. This research investigates the influence of additional residue in the P2 position on the inhibitory properties of phosphinopeptides. The synthetic strategy is proposed, based on retrosynthetic analysis. The N-C-P bond formation in the desired compounds is …

0106 biological sciences0301 basic medicineModels MolecularMolecular modelQH301-705.5StereochemistryPhosphinesProtein ConformationSwineLAP inhibitorsligand-enzyme interactionPhosphinate01 natural sciencesAminopeptidaseCatalysisArticleInorganic Chemistry03 medical and health sciencesResidue (chemistry)phosphinate pseudopeptideLeucyl AminopeptidaseMoietyPeptide bondAnimalsBiology (General)Physical and Theoretical ChemistryEnzyme InhibitorsQD1-999Molecular BiologyMagnesium ionmolecular modeling; LAP inhibitors; barley aminopeptidase inhibitor; phosphinate pseudopeptide; ligand-enzyme interaction; organophosphorus compoundSpectroscopyChemistrymolecular modelingOrganic ChemistryGeneral Medicineorganophosphorus compoundPeptide FragmentsComputer Science ApplicationsChemistry030104 developmental biologybarley aminopeptidase inhibitorHordeum vulgare010606 plant biology & botanyInternational Journal of Molecular Sciences; Volume 22; Issue 10; Pages: 5090
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The Odorant-Binding Proteins of the Spider Mite Tetranychus urticae

2021

Spider mites are one of the major agricultural pests, feeding on a large variety of plants. As a contribution to understanding chemical communication in these arthropods, we have characterized a recently discovered class of odorant-binding proteins (OBPs) in Tetranychus urticae. As in other species of Chelicerata, the four OBPs of T. urticae contain six conserved cysteines paired in a pattern (C1–C6, C2–C3, C4–C5) differing from that of insect counterparts (C1–C3, C2–C5, C4–C6). Proteomic analysis uncovered a second family of OBPs, including twelve members that are likely to be unique to T. urticae. A three-dimensional model of TurtOBP1, built on the recent X-ray structure of Varroa destruc…

0106 biological sciences0301 basic medicineModels MolecularProteomicsProteomeOdorant bindingProtein ConformationInsectLigandsReceptors Odorant01 natural scienceschemistry.chemical_compoundTetranychus urticaeBiology (General)SpectroscopyPhylogenymedia_commonmass spectrometryGeneticsbiologyligand-bindingMolecular Structurespider mitesGeneral MedicineTetranychus urticaeComputer Science ApplicationsChemistryConiferyl aldehydedisulfide bridgesTetranychidaeProtein Bindingspider mites.QH301-705.5media_common.quotation_subjectodorant-binding proteinsCatalysisArticleInorganic Chemistry03 medical and health sciencesSpider mite<i>Tetranychus urticae</i>AnimalsAmino Acid SequencePhysical and Theoretical ChemistryQD1-999Molecular BiologySpiderOrganic Chemistrybiology.organism_classification010602 entomology030104 developmental biologychemistryVarroa destructorOdorantsChelicerataInternational Journal of Molecular Sciences
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An Arabidopsis Mutant Over-Expressing Subtilase SBT4.13 Uncovers the Role of Oxidative Stress in the Inhibition of Growth by Intracellular Acidificat…

2020

Intracellular acid stress inhibits plant growth by unknown mechanisms and it occurs in acidic soils and as consequence of other stresses. In order to identify mechanisms of acid toxicity, we screened activation-tagging lines of Arabidopsis thaliana for tolerance to intracellular acidification induced by organic acids. A dominant mutant, sbt4.13-1D, was isolated twice and shown to over-express subtilase SBT4.13, a protease secreted into endoplasmic reticulum. Activity measurements and immuno-detection indicate that the mutant contains less plasma membrane H+-ATPase (PMA) than wild type, explaining the small size, electrical depolarization and decreased cytosolic pH of the mutant but not orga…

0106 biological sciences0301 basic medicineMutantmedicine.disease_cause01 natural sciencesCatalysisInorganic Chemistrylcsh:ChemistryH<sup>+</sup>-ATPase03 medical and health sciencesorganic acidsmedicinePhysical and Theoretical ChemistryMolecular Biologylcsh:QH301-705.5Spectroscopychemistry.chemical_classificationReactive oxygen speciesNADPH oxidasebiologyNADPH oxidaseEndoplasmic reticulumOrganic ChemistryWild typeROSGeneral MedicineComputer Science ApplicationsCell biology030104 developmental biologychemistrylcsh:Biology (General)lcsh:QD1-999biology.proteinactivation-taggingIntracellularOxidative stress010606 plant biology & botanyOrganic acidInternational Journal of Molecular Sciences
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Evidence for Succession and Putative Metabolic Roles of Fungi and Bacteria in the Farming Mutualism of the Ambrosia Beetle Xyleborus affinis.

2020

The bacterial and fungal community involved in ambrosia beetle fungiculture remains poorly studied compared to the famous fungus-farming ants and termites. Here we studied microbial community dynamics of laboratory nests, adults, and brood during the life cycle of the sugarcane shot hole borer, Xyleborus affinis. We identified a total of 40 fungal and 428 bacterial operational taxonomic units (OTUs), from which only five fungi (a Raffaelea fungus and four ascomycete yeasts) and four bacterial genera (Stenotrophomonas, Enterobacter, Burkholderia, and Ochrobactrum) can be considered the core community playing the most relevant symbiotic role. Both the fungal and bacterial populations varied s…

0106 biological sciences0301 basic medicinePhysiologyAmbrosia fungimicrobiomeFungicultureFungusBiologyAmbrosia beetle010603 evolutionary biology01 natural sciencesBiochemistryMicrobiologyHost-Microbe Biology03 medical and health sciencesmycobiomeSymbiosisBotanyGeneticsAmbrosiaInternal transcribed spacerXyleborus affinisMolecular BiologyEcology Evolution Behavior and SystematicsMutualism (biology)fungibiology.organism_classificationQR1-502Computer Science Applications030104 developmental biologyModeling and SimulationResearch Article
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