Search results for "chromosome"

showing 10 items of 1175 documents

Spanish human proteome project: Dissection of chromosome 16

2013

11 páginas, 6 figuras.-- et al.

ProteomicsProteomeGene ExpressionBiologyProteomicsMicrobiologíaBiochemistryMass SpectrometryCell LineTranscriptome03 medical and health sciencesChromosome 16Human proteome projectHumansHuman proteome projectShotgun proteomicsDatabases ProteinTranscriptomics030304 developmental biologyGenetics0303 health sciencesGenome Human030302 biochemistry & molecular biologyProteinsGeneral ChemistryChromosome 163. Good healthProteomeHuman genomeSample collectionTranscriptomeChromosomes Human Pair 16
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Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome

2013

All participating laboratories are members of ProteoRed-ISCIII.-- et al.

ProteomicsProteomeSequence analysisBioinformaticsBiologyMicrobiologíaENCODEProteomicsBiochemistryMass SpectrometryTranscriptome03 medical and health sciencesAnnotationChromosome 16RNA-Seq. ENCODEHuman proteome projectHumansHuman proteome projectTranscriptomics030304 developmental biologyGenetics0303 health sciencesSequence Analysis RNA030302 biochemistry & molecular biologyGeneral ChemistryChromosome 163. Good healthProteomeTranscriptomeChromosomes Human Pair 16Chromatography Liquid
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Chemically induced chromosome damage in early-developing embryos ofAnilocra physodes L. (Crustacea, Isopoda) following exposure to bis[Dimethyltin(IV…

1993

In order to obtain chromosome preparations from early-developing embryos of Anilocra physodes, a squash technique has been successfully employed. Results gathered after exposure of this material to bis[dimethyltin(IV)chloro]protoporphyrin IX {[(CH3)2SnCl]2 - Protoporphyrin IX} solutions at different exposure times suggest that this chemical complex is capable of producing abnormal metaphase and anaphase figures in proportion to its concentration and not to exposure length. Essentially, all of the chromosome abnormalities are classifiable as chromosome fragments mainly observed at the metaphase stage; chromosome bridges; and large decondensed chromosome regions.

Protoporphyrin IXChemistryStereochemistryChromosomeEmbryoGeneral ChemistryMolecular biologyInorganic Chemistrychemistry.chemical_compoundChromosome regionsProtoporphyrinMetaphaseDNAAnaphaseApplied Organometallic Chemistry
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ChemInform Abstract: Chemically Induced Chromosome Damage in Early-Developing Embryos of Anilocra Physodes L. (Crustacea, Isopoda) Following Exposure…

2010

In order to obtain chromosome preparations from early-developing embryos of Anilocra physodes, a squash technique has been successfully employed. Results gathered after exposure of this material to bis[dimethyltin(IV)chloro]protoporphyrin IX {[(CH3)2SnCl]2 - Protoporphyrin IX} solutions at different exposure times suggest that this chemical complex is capable of producing abnormal metaphase and anaphase figures in proportion to its concentration and not to exposure length. Essentially, all of the chromosome abnormalities are classifiable as chromosome fragments mainly observed at the metaphase stage; chromosome bridges; and large decondensed chromosome regions.

Protoporphyrin IXbiologyChromosomeEmbryoGeneral Medicinebiology.organism_classificationMolecular biologyCrustaceanchemistry.chemical_compoundIsopodachemistryChromosome regionsMetaphaseAnaphaseChemInform
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GH successful treatment in a female with a de novo 46,XX,add(X)(p36),t(X;Y)(p36.3;p11.2), growth impairment and SHOX-haploinsufficiency

2019

Abstract Children with chromosome translocations, concerning X chromosome, have a genetic pattern different from Turner syndrome; however, when a translocation involves the of part of X chromosome including short stature homeobox-containing Sex-determining Region Y gene, growth may be severely compromised. We describe the clinical case of a 2.2-year-old-female, arrived at our paediatric unit for a decrease of height velocity. The karyotype was 46,XX,add(X)(p36.3). Array comparative genomic hybridization showed a fragment of Y chromosome, extended from 8.803.981 (Yp11.2) to 28.767.604 (Yq11.23). The final karyotype was 46,XX,add(X)(p36),t(X;Y)(p36.3;p11.2). Fluorescence in situ Hybridization…

Pseudoautosomal regionChromosomal translocationY chromosomeShort statureChromosome translocation03 medical and health sciences0302 clinical medicine030225 pediatricsTurner syndromemedicineTreatment adherence030212 general & internal medicineLetter to the EditorGrowth hormoneX chromosomemedicine.diagnostic_testbusiness.industrylcsh:RJ1-570lcsh:PediatricsKaryotypemedicine.diseaseMolecular biologySHOX haploinsufficiencymedicine.symptombusinessFluorescence in situ hybridization
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Development of an Italian RM Y-STR haplotype database: Results of the 2013 GEFI collaborative exercise.

2015

Recently introduced rapidly mutating Y-chromosomal short tandem repeat (RM Y-STR) loci, displaying a multiple-fold higher mutation rate relative to any other Y-STRs, including those conventionally used in forensic casework, have been demonstrated to improve the resolution of male lineage differentiation and to allow male relative separation usually impossible with standard Y-STRs. However, large and geographically-detailed frequency haplotype databases are required to estimate the statistical weight of RM Y-STR haplotype matches if observed in forensic casework. With this in mind, the Italian Working Group (GEFI) of the International Society for Forensic Genetics launched a collaborative ex…

Quality ControlMutation rateRegional ItalianLineage differentiationDNA PrimerY-chromosome; Rapidly mutating Y-STRs (RM Y-STRs); Haplotype; Lineage differentiation; Relative differentiation; Italy2734Biologycomputer.software_genrePathology and Forensic MedicineGeneticDatabases GeneticGeneticsHaplotype Italy Lineage differentiation Rapidly mutating Y-STRs (RM Y-STRs) Relative differentiation Y-chromosomeHaplotypeHumansY-STRCooperative BehaviorY-chromosomeDNA PrimersChromosomes Human YDatabaseBase SequenceMedicine (all)HaplotypeRelative differentiationhumanitiesForensic scienceHaplotypesItalyLineage differentiationMicrosatelliteRapidly mutating Y-STRs (RM Y-STRs)Haplotype estimationcomputerHumanForensic science international. Genetics
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Molecular modelling and QSAR in the discovery of HIV-1 integrase inhibitors

2007

The treatment regimens for the HIV-1 have mainly included reverse transcriptase or protease inhibitors but their long-term clinical utility is limited by severe side effects and viral drug resistance. A new attractive target for chemotherapeutic intervention can be the Integrase enzyme, that mediates the integration of HIV-1 DNA into a host chromosome, for which there is no known counterparts in the host cell. A number of derivatives have been found to inhibit IN in in vitro assays, but no successful drug based on them has emerged so far, although many compounds have been proposed. Moreover most of the inhibitors do not belong to a very precise structural class: this fact makes these compou…

Quantitative structure–activity relationshipProteasebiologymedicine.medical_treatmentIntegrase inhibitorDrug designGeneral MedicineComputational biologyDe novo design Docking HIV-1 integrase inhibitors Molecular dynamics Molecular modelling Pharmacophore QSARBioinformaticsIntegraseDocking (molecular)Host chromosomeDrug Discoverybiology.proteinmedicineMolecular MedicinePharmacophore
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Comparative cytogenetics of human chromosome 3q21.3 reveals a hot spot for ectopic recombination in hominoid evolution

2004

Fluorescence in situ hybridization mapping of fully integrated human BAC clones to primate chromosomes, combined with precise breakpoint localization by PCR analysis of flow-sorted chromosomes, was used to analyze the evolutionary rearrangements of the human 3q21.3-syntenic region in orangutan, siamang gibbon, and silvered-leaf monkey. Three independent evolutionary breakpoints were localized within a 230-kb segment contained in BACs RP11-93K22 and RP11-77P16. Approximately 200 kb of the human 3q21.3 sequence was not present on the homologous orangutan, siamang, and Old World monkey chromosomes, suggesting a genomic DNA insertion into the breakpoint region in the lineage leading to humans a…

Recombination GeneticGeneticsGenome evolutionModels GeneticGenome HumanEndogenous RetrovirusesBreakpointChromosome MappingChromosome BreakageHominidaeBiologyGenomeEvolution MolecularMolecular evolutionCytogenetic AnalysisGeneticsAnimalsHumansEctopic recombinationHuman genomeChromosomes Human Pair 3Segmental duplicationSyntenyGenomics
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Fine analysis of the chromatin structure of the yeast SUC2 gene and of its changes upon derepression. Comparison between the chromosomal and plasmid-…

1987

Micrococcal nuclease digestion has been used to investigate some fine details of the chromatin structure of the yeast SUC2 gene for invertase. Precisely positioned nucleosomes have been found on a 2 kb sequence from the 3' non-coding region, and four nucleosomes also seem to occupy fixed positions on the 5' flank. Eleven nucleosomes lie on the coding region, although their positioning is not as precise as in the flanks. When the gene is derepressed, these latter nucleosomes adopt a more open conformation and so do two of the nucleosomes positioned on the 5' flank. A dramatic change occurs in the 3' flank, whose involvement in the structural transitions of chromatin upon gene activation is p…

Regulation of gene expressionGeneticsbiologyGlycoside Hydrolasesbeta-FructofuranosidaseGenes FungalChromosomeDNA Restriction EnzymesSaccharomyces cerevisiaeChromatinChromatinNucleosomesPlasmidGenesGeneticsbiology.proteinNucleosomeCoding regionMicrococcal NucleaseEnzyme RepressionDerepressionMicrococcal nuclease
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A new Multi-Layers Method to Analyze Gene Expression

2007

In the paper a new Multi-Layers approach (called Multi-Layers Model MLM) for the analysis of stochastic signals and its application to the analysis of gene expression data is presented. It consists in the generation of sub-samples from the input signal by applying a threshold technique based on cut-set optimal conditions. The MLM has been applied on synthetic and real microarray data for the identification of particular regions across DNA called nucleosomes and linkers. Nucleosomes are the fundamental repeating subunits of all eukaryotic chromatin, and their positioning provides useful information regarding the regulation of gene expression in eukaryotic cells. Results have shown a good rec…

Regulation of gene expressionbiologySettore INF/01 - InformaticaComputer scienceMicroarray analysis techniquesSaccharomyces cerevisiaeChromosomeComputational biologybiology.organism_classificationBioinformaticsSynthetic dataBioinformatics Nucleosome positioning Multi layer methods.ChromatinIdentification (information)chemistry.chemical_compoundchemistrySettore BIO/10 - BiochimicaGene expressionNucleosomeHidden Markov modelDNA
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