Search results for "cid"

showing 10 items of 19479 documents

Overexpression of the triose phosphate translocator (TPT) complements the abnormal metabolism and development of plastidial glycolytic glyceraldehyde…

2017

The presence of two glycolytic pathways working in parallel in plastids and cytosol has complicated the understanding of this essential process in plant cells, especially the integration of the plastidial pathway into the metabolism of heterotrophic and autotrophic organs. It is assumed that this integration is achieved by transport systems, which exchange glycolytic intermediates across plastidial membranes. However, it is unknown whether plastidial and cytosolic pools of 3-phosphoglycerate (3-PGA) can equilibrate in non-photosynthetic tissues. To resolve this question, we employed Arabidopsis mutants of the plastidial glycolytic isoforms of glyceraldehyde-3-phosphate dehydrogenase (GAPCp)…

0106 biological sciences0301 basic medicineMutantArabidopsisDehydrogenasePlant ScienceGlyceric Acids01 natural sciences03 medical and health sciencesGeneticsGlycolysisPlastidsPlastidGlyceraldehyde 3-phosphate dehydrogenasebiologyArabidopsis ProteinsGlyceraldehyde-3-Phosphate DehydrogenasesCell BiologyMetabolismCytosol030104 developmental biologyBiochemistryTriose phosphate translocatorbiology.proteinGlycolysis010606 plant biology & botanyThe Plant journal : for cell and molecular biology
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An Arabidopsis Mutant Over-Expressing Subtilase SBT4.13 Uncovers the Role of Oxidative Stress in the Inhibition of Growth by Intracellular Acidificat…

2020

Intracellular acid stress inhibits plant growth by unknown mechanisms and it occurs in acidic soils and as consequence of other stresses. In order to identify mechanisms of acid toxicity, we screened activation-tagging lines of Arabidopsis thaliana for tolerance to intracellular acidification induced by organic acids. A dominant mutant, sbt4.13-1D, was isolated twice and shown to over-express subtilase SBT4.13, a protease secreted into endoplasmic reticulum. Activity measurements and immuno-detection indicate that the mutant contains less plasma membrane H+-ATPase (PMA) than wild type, explaining the small size, electrical depolarization and decreased cytosolic pH of the mutant but not orga…

0106 biological sciences0301 basic medicineMutantmedicine.disease_cause01 natural sciencesCatalysisInorganic Chemistrylcsh:ChemistryH<sup>+</sup>-ATPase03 medical and health sciencesorganic acidsmedicinePhysical and Theoretical ChemistryMolecular Biologylcsh:QH301-705.5Spectroscopychemistry.chemical_classificationReactive oxygen speciesNADPH oxidasebiologyNADPH oxidaseEndoplasmic reticulumOrganic ChemistryWild typeROSGeneral MedicineComputer Science ApplicationsCell biology030104 developmental biologychemistrylcsh:Biology (General)lcsh:QD1-999biology.proteinactivation-taggingIntracellularOxidative stress010606 plant biology & botanyOrganic acidInternational Journal of Molecular Sciences
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Effects of transgenic expression of Brevibacterium linens methionine gamma lyase (MGL) on accumulation of Tylenchulus semipenetrans and key aminoacid…

2017

Key message Carrizo transgenic plants overexpressing methionine-gamma-lyase produced dimethyl sulfide. The transgenic plants displayed more resistance to nematode attacks (Tylenculus semipenetrans) and may represent an innovative strategy for nematode control. Abstract Tylenchulus semipenetrans is a nematode pest of many citrus varieties that causes extensive damage to commercial crops worldwide. Carrizo citrange vr. (Citrus sinensis L. Usb × Poncirus trifoliate L. Raf) plants overexpressing Brevibacterium linens methionine-gamma-lyase (BlMGL) produced the sulfur volatile compound dimethyl sulfide (DMS). The aim of this work was to determine if transgenic citrus plants expressing BlMGL show…

0106 biological sciences0301 basic medicineNematodesPlant BiologyPlant ScienceGenetically modified crops01 natural sciencesPlant Rootschemistry.chemical_compoundMethionineMethionine gamma lyaseBrevibacteriumAmino AcidsNematodeCitrus sinensibiologySulfur volatilefood and beveragesGeneral MedicinePlantsPlants Genetically ModifiedTylenchulus semipenetransAmino AcidHorticultureCarbon-Sulfur LyasesBiochemistryCarbon-Sulfur LyasePlant LeaveCitrus × sinensisCitrus sinensisTylenchidaMethionine gamma-lyaseSulfideTransgenePlant Biology & BotanyPlant DiseaseGenetically ModifiedSulfidesArticle03 medical and health sciencesGeneticSulfur volatilesGeneticsAnimalsPlant DiseasesMethionineAnimalfungiPlant RootBrevibacteriumbiology.organism_classificationBrain DisordersPlant Leaves030104 developmental biologychemistryGlycineBiochemistry and Cell BiologyAgronomy and Crop Science010606 plant biology & botany
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Evolutionary diversification of type-2 HDAC structure, function and regulation in Nicotiana tabacum

2018

Ministère de l'Education Nationale et de la Recherche ; Conseil Régional de Bourgogne (PARI AGRALE8) ; Association pour la Recherche sur les Nicotianacées ; Conseil Régional de Bourgogne; International audience; Type-2 HDACs (HD2s) are plant-specific histone deacetylases that play diverse roles during development and in responses to biotic and abiotic stresses. In this study we characterized the six tobacco genes encoding HD2s that mainly differ by the presence or the absence of a typical zinc finger in their C-terminal part. Of particular interest, these HD2 genes exhibit a highly conserved intron/exon structure. We then further investigated the phylogenetic relationships among the HD2 gen…

0106 biological sciences0301 basic medicineNicotiana tabacumPlant Science01 natural sciencesEvolution MolecularType-2 HDAC (HD2)03 medical and health sciencesPhylogeneticsZinc fingerTobaccoGeneticsArabidopsis thalianaGene family[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyAmino Acid SequenceGenePhylogenySolanaceaePlant ProteinsZinc fingerGeneticsbiologyModels GeneticIntronZinc FingersGeneral MedicineSalt Tolerancebiology.organism_classificationSalt stress responseComplementation030104 developmental biologyHistone DeACetylase (HDAC)Agronomy and Crop ScienceSequence Alignment010606 plant biology & botany
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Defense Priming in Nicotiana tabacum Accelerates and Amplifies ‘New’ C/N Fluxes in Key Amino Acid Biosynthetic Pathways

2020

: In the struggle to survive herbivory by leaf-feeding insects, plants employ multiple strategies to defend themselves. One mechanism by which plants increase resistance is by intensifying their responsiveness in the production of certain defense agents to create a rapid response. Known as defense priming, this action can accelerate and amplify responses of metabolic pathways, providing plants with long-lasting resistance, especially when faced with waves of attack. In the work presented, short-lived radiotracers of carbon administered as 11CO2 and nitrogen administered as 13NH3 were applied in Nicotiana tabacum, to examine the temporal changes in &lsquo

0106 biological sciences0301 basic medicineNicotiana tabacumamino acid metabolismPlant Science01 natural sciencesplant insect herbivorySerine03 medical and health scienceschemistry.chemical_compoundBiosynthesislcsh:Botanynitrogen-13Shikimate pathwaycarbon-11Secondary metabolismEcology Evolution Behavior and SystematicsX-ray fluorescence imagingchemistry.chemical_classificationEcologybiologydefense primingJasmonic acidfungifood and beveragesbiology.organism_classificationlcsh:QK1-989Amino acidMetabolic pathway030104 developmental biologychemistryBiochemistryisotope ratio analysis010606 plant biology & botanyPlants
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The phosphorylated pathway of serine biosynthesis links plant growth with nitrogen metabolism

2021

Abstract Because it is the precursor for various essential cellular components, the amino acid serine is indispensable for every living organism. In plants, serine is synthesized by two major pathways: photorespiration and the phosphorylated pathway of serine biosynthesis (PPSB). However, the importance of these pathways in providing serine for plant development is not fully understood. In this study, we examine the relative contributions of photorespiration and PPSB to providing serine for growth and metabolism in the C3 model plant Arabidopsis thaliana. Our analyses of cell proliferation and elongation reveal that PPSB-derived serine is indispensable for plant growth and its loss cannot b…

0106 biological sciences0301 basic medicineNitrogenPhysiologyNitrogen assimilationCell RespirationArabidopsisPlant DevelopmentPlant Science01 natural sciencesSerine03 medical and health scienceschemistry.chemical_compoundPlant Growth RegulatorsBiosynthesisGlutamine synthetaseSerineGeneticsPhosphorylationResearch ArticlesCell Proliferationchemistry.chemical_classificationbiologyChemistryMetabolismBiosynthetic PathwaysAmino acid030104 developmental biologyBiochemistrybiology.proteinPhotorespirationGlutamine oxoglutarate aminotransferase010606 plant biology & botanyPlant Physiology
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X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

2017

X!TandemPipeline is a software designed to perform protein inference and to manage redundancy in the results of phosphosite identification by database search. It provides the minimal list of proteins or phosphosites that are present in a set of samples using grouping algorithms based on the principle of parsimony. Regarding proteins, a two-level classification is performed, where groups gather proteins sharing at least one peptide and subgroups gather proteins that are not distinguishable according to the identified peptides. Regarding phosphosites, an innovative approach based on the concept of phosphoisland is used to gather overlapping phosphopeptides. The graphical interface of X!Tandem…

0106 biological sciences0301 basic medicinePhosphopeptidesProteomicsphosphopeptideComputer sciencecomputer.internet_protocolcomputer.software_genre01 natural sciencesBiochemistrydatabase search03 medical and health sciencesSearch engineUser-Computer InterfaceRedundancy (information theory)SoftwareTandem Mass Spectrometry[ INFO.INFO-BI ] Computer Science [cs]/Bioinformatics [q-bio.QM]HumansDatabase search engineAmino Acid SequenceDatabases ProteinGraphical user interfacemass spectrometrybusiness.industrysoftwareprotein inferenceProteinsGeneral ChemistrybioinformaticsSearch EngineBenchmarking030104 developmental biologyComputingMethodologies_PATTERNRECOGNITIONProtein inferenceData mining[INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM]businesscomputerXMLAlgorithms010606 plant biology & botany
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Oxylipin mediated stress response of a miraculin-like protease inhibitor in Hexanoic acid primed eggplant plants infested by Colorado potato beetle

2017

Insect-plant interactions are governed by a complex equilibrium between the mechanisms through which plant recognize insect attack and orchestrate downstream signaling events that trigger plant defense responses, and the mechanisms by which insects overcome plant defenses. Due to this tight and dynamic interplay, insight into the nature of the plant defense response can be gained by analyzing changes in the insect herbivores digestive system upon plant feeding. In this work we have identified a Solanum melongena miraculin-like protease inhibitor in the midgut juice of Colorado potato larvae feeding on eggplant plants treated with the natural inducer of plant defenses hexanoic acid. We analy…

0106 biological sciences0301 basic medicinePhysiologyMiraculinPlant ScienceEggplant01 natural sciences03 medical and health scienceschemistry.chemical_compoundGene Expression Regulation PlantBotanyPlant defense against herbivoryAnimalsColorado potato beetleProtease InhibitorsOxylipinsSolanum melongenaCaproatesMiraculin-like proteinHexanoic acidbiologyColorado potato beetlefungiPlant physiologyfood and beveragesOxylipinbiology.organism_classificationCell biologyColeoptera030104 developmental biologychemistryDefense primingSolanumHexanoic acidAgronomy and Crop ScienceSolanaceae010606 plant biology & botany
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Phosphoglycerate Kinases Are Co-Regulated to Adjust Metabolism and to Optimize Growth

2017

[EN] In plants, phosphoglycerate kinase (PGK) converts 1,3-bisphosphoglycerate into 3-phosphoglycerate in glycolysis but also participates in the reverse reaction in gluconeogenesis and the Calvin-Benson cycle. In the databases, we found three genes that encode putative PGKs. Arabidopsis (Arabidopsis thaliana) PGK1 was localized exclusively in the chloroplasts of photosynthetic tissues, while PGK2 was expressed in the chloroplast/plastid of photosynthetic and nonphotosynthetic cells. PGK3 was expressed ubiquitously in the cytosol of all studied cell types. Measurements of carbohydrate content and photosynthetic activities in PGK mutants and silenced lines corroborated that PGK1 was the phot…

0106 biological sciences0301 basic medicinePhysiologyResearch Articles - Focus IssueMutantArabidopsisPlant ScienceGlyceric AcidsPlant Roots01 natural sciencesChloroplastGene03 medical and health sciencesCytosolGene Expression Regulation PlantArabidopsisGeneticsBIOQUIMICA Y BIOLOGIA MOLECULARMetabolomicsArabidopsis thalianaBamboo-Mosaic-VirusPlastidPhosphoglycerate kinaseGas-ChromatographybiologyArabidopsis ProteinsWild typefood and beveragesMetabolismArabidopsis-ThalianaPlant Components AerialPlants Genetically Modifiedbiology.organism_classificationHelianthus-Annuus L.3-Phosphoglycerate kinaseChloroplastPhosphoglycerate Kinase030104 developmental biologyBiochemistryMultigene FamilyMutationNicotiana-BenthamianaFISIOLOGIA VEGETALPlastics010606 plant biology & botanyPhosphorylating glyceraldehyde-3-phosphate dehydrogenaseGastric-Cancer
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Flashing light emitting diodes (LEDs) induce proteins, polyunsaturated fatty acids and pigments in three microalgae

2020

As the periodic emission of light pulses by light emitting diodes (LEDs) is known to stimulate growth or induce high value biocompounds in microalgae, this flashing light regime was tested on growth and biochemical composition of the microalgae Nannochloropsis gaditana, Koliella antarctica and Tetraselmis chui. At low flashing light frequencies (e.g., 5 and 50 Hz, Duty cycle = 0.05), a strain-dependent growth inhibition and an accumulation of protein, polyunsaturated fatty acids, chlorophyll or carotenoids (lutein, β-carotene, violaxanthin and neoxanthin) was observed. In addition, a 4-day application of low-frequency flashing light to concentrated cultures increased productivities of eicos…

0106 biological sciences0301 basic medicinePigmentsLuteinBio Process EngineeringTotal lipidsSettore ING-IND/25 - Impianti ChimiciBioengineering01 natural sciencesApplied Microbiology and Biotechnology03 medical and health scienceschemistry.chemical_compoundPigment:Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480::Plantefysiologi: 492 [VDP]NeoxanthinPulsed lightChlorophytaVDP::Teknologi: 500::Bioteknologi: 590010608 biotechnologyVDP::Technology: 500::Biotechnology: 590MicroalgaeFood scienceBiomassCarotenoidVLAGchemistry.chemical_classificationDuty cycleDuty cycle Pigments PUFA Pulsed light Total lipidsFatty Acidsfood and beveragesGeneral Medicine:Matematikk og Naturvitenskap: 400::Basale biofag: 470::Molekylærbiologi: 473 [VDP]Flashing030104 developmental biologychemistryChlorophyllvisual_artvisual_art.visual_art_mediumFatty Acids Unsaturated:Teknologi: 500::Bioteknologi: 590 [VDP]StramenopilesPUFABiotechnologyPolyunsaturated fatty acidViolaxanthin
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