Search results for "circular"

Studio dell'interazione di DNA con complessi di metalli di transizione

2014

The tetrameric α-helical membrane protein GlpF unfolds via a dimeric folding intermediate.

2011

Many membrane proteins appear to be present and functional in higher-order oligomeric states. While few studies have analyzed the thermodynamic stability of α-helical transmembrane (TM) proteins under equilibrium conditions in the past, oligomerization of larger polytopic monomers has essentially not yet been studied. However, it is vital to study the folding of oligomeric membrane proteins to improve our understanding of the general mechanisms and pathways of TM protein folding. To investigate the folding and stability of the aquaglyceroporin GlpF from Escherichia coli, unfolding of the protein in mixed micelles was monitored by steady-state fluorescence and circular dichroism spectroscopy…

GUI Implementation of VCDtools, A Program to Analyze Computed Vibrational Circular Dichroism Spectra

2020

As computing power increases, vibrational circular dichroism (VCD) calculations on molecules of larger sizes and complexities become possible. At the same time, the spectra resulting from these computations become increasingly more cumbersome to analyze. Here, we describe the GUI implementation into the Amsterdam Density Functional (ADF) software package of VCDtools, a toolbox that provides a user-friendly means to analyze VCD spectra. Key features are the use of the generalized coupled oscillator analysis methods, as well as an easy visualization of the atomic electric and magnetic transition dipole moments which together provide detailed insight in the origin of the VCD intensity. Using s…

Dimension estimates on circular (s,t)-Furstenberg sets

2023

In this paper, we show that circular $(s,t)$-Furstenberg sets in $\mathbb R^2$ have Hausdorff dimension at least $$\max\{\frac{t}3+s,(2t+1)s-t\} \text{ for all $0<s,t\le 1$}.$$ This result extends the previous dimension estimates on circular Kakeya sets by Wolff.

Circular law for sparse random regular digraphs

2020

Fix a constant $C\geq 1$ and let $d=d(n)$ satisfy $d\leq \ln^{C} n$ for every large integer $n$. Denote by $A_n$ the adjacency matrix of a uniform random directed $d$-regular graph on $n$ vertices. We show that, as long as $d\to\infty$ with $n$, the empirical spectral distribution of appropriately rescaled matrix $A_n$ converges weakly in probability to the circular law. This result, together with an earlier work of Cook, completely settles the problem of weak convergence of the empirical distribution in directed $d$-regular setting with the degree tending to infinity. As a crucial element of our proof, we develop a technique of bounding intermediate singular values of $A_n$ based on studyi…

High Diversity of the Viral Community from an Antarctic Lake

2009

Viruses are the most abundant biological entities and can control microbial communities, but their identity in terrestrial and freshwater Antarctic ecosystems is unknown. The genetic structure of an Antarctic lake viral community revealed unexpected genetic richness distributed across the highest number of viral families that have been found to date in aquatic viral metagenomes. In contrast to other known aquatic viromes, which are dominated by bacteriophage sequences, this Antarctic virus assemblage had a large proportion of sequences related to eukaryotic viruses, including phycodnaviruses and single-stranded DNA (ssDNA) viruses not previously identified in aquatic environments. We also o…

Mutational analysis of eggplant latent viroid RNA processing in Chlamydomonas reinhardtii chloroplast.

2009

Viroids of the family Avsunviroidae, such as eggplant latent viroid (ELVd), contain hammerhead ribozymes and replicate in the chloroplasts of the host plant through an RNA-based symmetrical rolling-circle mechanism in which oligomeric RNAs of both polarity are processed to monomeric linear RNAs (by cleavage) and to monomeric circular RNAs (by ligation). Using an experimental system consisting of transplastomic lines of the alga Chlamydomonas reinhardtii, a mutational analysis of sequence and structural elements in the ELVd molecule that are involved in transcript processing in vivo in a chloroplastic context was carried out. A collection of six insertion and three deletion ELVd mutants was …

GIS-data related route optimization, hierarchical clustering, location optimization, and kernel density methods are useful for promoting distributed …

2019

Currently, geographic information system (GIS) models are popular for studying location-allocation-related questions concerning bioenergy plants. The aim of this study was to develop a model to investigate optimal locations for two different types of bioenergy plants, for farm and centralized biogas plants, and for wood terminals in rural areas based on minimizing transportation distances. The optimal locations of biogas plants were determined using location optimization tools in R software, and the optimal locations of wood terminals were determined using kernel density tools in ArcGIS. The present case study showed that the utilized GIS tools are useful for bioenergy-related decision-maki…

Conceptualizing Core Aspects on Circular Economy in Cities

2021

Currently, there are many different interpretations in the literature of what a circular economy is and how it functions. As cities are still facing challenges to become fully sustainable, the need for a comprehensive analysis of how the circular economy can be implemented in urban areas is increasing. This article aims at outlining circular cities by their key characteristics and to further explore and provide a framework for fostering circularity at the city level. In order to achieve this goal, we performed a systematic review and analyzed key papers published in the field of circular economy to determine how circular economy practices form circular cities. We discovered that cities play…

Environmental Sustainability Approaches and Positive Energy Districts: A Literature Review

2021

During the last decade, increasing attention has been paid to the emerging concept of Positive Energy Districts (PED) with the aim of pushing the transition to clean energy, but further research efforts are needed to identify design approaches optimized from the point of view of sustainable development. In this context, this literature review is placed, with a specific focus on environmental sustainability within innovative and eco-sustainable districts. The findings show that some sustainability aspects such as sustainable food, urban heat islands mitigation and co-impacts, e.g., green gentrification, are not adequately assessed, while fragmented thinking limits the potential of circularit…