Search results for "coding"
showing 10 items of 920 documents
A Basis Set of Elementary Operations Captures Recombination of Neocortical Cell Assemblies During Basal Conditions and Learning
2019
Cell assemblies — subgroups within neuronal networks — are believed to serve as functional entities underlying cognitive capabilities such as categorical perception or memory formation and storage. However, little is known about their long-term dynamics. Using chronic in vivo calcium imaging in the mouse auditory cortex, we find that cell assemblies undergo continuous recombination, even under behaviorally stable conditions. We identify a basis set of elementary operations capturing the dynamics of cell assemblies, which involve plasticity of both the stimulus tuning of particular assemblies as well as the cellular composition of an assembly. Auditory fear conditioning introduces biases in …
Transcriptome-wide identification of transient RNA G-quadruplexes in human cells
2018
Guanine-rich RNA sequences can fold into four-stranded structures, termed G-quadruplexes (G4-RNAs), whose biological roles are poorly understood, and in vivo existence is debated. To profile biologically relevant G4-RNA in the human transcriptome, we report here on G4RP-seq, which combines G4-RNA-specific precipitation (G4RP) with sequencing. This protocol comprises a chemical crosslinking step, followed by affinity capture with the G4-specific small-molecule ligand/probe BioTASQ, and target identification by sequencing, allowing for capturing global snapshots of transiently folded G4-RNAs. We detect widespread G4-RNA targets within the transcriptome, indicative of transient G4 formation in…
ALS-linked FUS mutations confer loss and gain of function in the nucleus by promoting excessive formation of dysfunctional paraspeckles
2019
Mutations in the FUS gene cause amyotrophic lateral sclerosis (ALS-FUS). Mutant FUS is known to confer cytoplasmic gain of function but its effects in the nucleus are less understood. FUS is an essential component of paraspeckles, subnuclear bodies assembled on a lncRNA NEAT1. Paraspeckles may play a protective role specifically in degenerating spinal motor neurons. However it is still unknown how endogenous levels of mutant FUS would affect NEAT1/paraspeckles. Using novel cell lines with the FUS gene modified by CRISPR/Cas9 and human patient fibroblasts, we found that endogenous levels of mutant FUS cause accumulation of NEAT1 isoforms and paraspeckles. However, despite only mild cytoplasm…
The Impact of Environmental Conditions on Efficiency of Host Plant DNA Barcoding for Polyphagous Beetles.
2015
Recently, several papers were published dealing with host plant identification for selected species of insects, including beetles. These studies took advantage of the DNA barcoding approach and generally showed that it is possible to identify diet composition from plant DNA present in insect guts. However, none of these studies considered how the impact of environmental conditions affected the likelihood of insect feeding and, therefore, the presence of host plant DNA that could be amplified and sequenced. In the present study, individuals of the polyphagous weevil Centricnemus leucogrammus (Germar, 1824) (Curculionidae: Entiminae) were used to test the hypothesis that harsh environmental c…
DNA barcoding reveals different cestode helminth species in northern European marine and freshwater ringed seals
2021
Three subspecies of the ringed seal (Pusa hispida) are found in northeastern Europe: P. h. botnica in the Baltic Sea, P. h saimensis in Lake Saimaa in Finland, and P. h. ladogensis in Lake Ladoga in Russia. We investigated the poorly-known cestode helminth communities of these closely related but ecologically divergent subspecies using COI barcode data. Our results show that, while cestodes from the Baltic Sea represent Schistocephalus solidus, all worms from the two lakes are identified as Ligula intestinalis, a species that has previously not been reported from seals. The observed shift in cestode communities appears to be driven by differential availability of intermediate fish host spec…
Modeling Multi-label Recurrence in Data Streams
2019
Most of the existing data stream algorithms assume a single label as the target variable. However, in many applications, each observation is assigned to several labels with latent dependencies among them, which their target function may change over time. Classification of such non-stationary multi-label streaming data with the consideration of dependencies among labels and potential drifts is a challenging task. The few existing studies mostly cope with drifts implicitly, and all learn models on the original label space, which requires a lot of time and memory. None of them consider recurrent drifts in multi-label streams and particularly drifts and recurrences visible in a latent label spa…
Analysis of health communication texts: UK press coverage of debates about assisted dying
2015
Conventionally, social researchers analyse media messages by reading text and coding it. This is time consuming and restricts many studies to small samples. Nowadays very large amounts of text are available in electronic form, offering potential insights into the health messages they contain, but which appear daunting to the analyst with limited resources using conventional methods. I explain and illustrate methods for the computer-assisted analysis of media texts, using specialised software (Wordsmith Tools and Wordstat). These allow the analyst to provide a statistical overview of the key features of texts, to compare them (looking at change over time, for example) and to select illustrat…
Color encoding for polychromatic single-channel optical pattern recognition
2010
The common multichannel system for recognizing colored images is replaced by a color-encoded single-channel system. Amethod inspired by the Munsell color system is used for encoding the different colors as phase and amplitude functions. It is shown that for many practical cases the phase information part of the color code is sufficient for obtaining good results. An implementation based on a liquid-crystal television panel that works in a phase-modulation mode is suggested. Computer simulations that demonstrate the capabilities of the suggested method are given as well as a comparison with previously published multichannel performance.
Model and optimal Call Admission Policy in Cellular Mobile Networks
2000
For current cellular networks, two important Quality of Service (QoS) measures are the fractions of new and handoff calls that are blocked due to unavailability of channels. Based on these QoS measures, we propose a queuing network model with impatient users for handoff and new calls in cellular mobile networks. The number of simultaneous calls, that can be supported, is modeled by C identical servers with exponentially distributed session duration for each one of them. Priority is given to handoffs over new calls. We use for that a Guard Channel policy that reserves a set of CH channels for handoff calls, new calls being served at their arrival if there are more than CH available channels.…
Channel capacity of fading channels for differentially encoded transmission
1999
The capacity of flat fading channels when applying differential encoding with noncoherent reception and no channel state information available at the receiver is considered. Numerical results indicate the gains achievable by multiple symbol detection in the case of slowly time-varying channels and provide a comparison between schemes with different potential bandwidth efficiencies.