Search results for "computational"

showing 10 items of 5884 documents

Predominance of 2-arylhydrazones of 1,3-diphenylpropane-1,2,3-trione over its proton-transfer products

2001

2-Phenylhydrazones of 1,3-diphenyl-1,2,3-trione are the dominant tautomeric form detected in chloroform solution by 15N NMR chemical shifts. The substituent in the phenylhydrazone moiety does not affect this tautomeric preference. The substituent effect is transmitted effectively only to the hydrazone nitrogen and hydrogen atoms. Ab initio calculations show that the ketohydrazone tautomer is really very much favoured over its proton-transfer products in chloroform solution. The same tautomer was also detected in the crystal state by X-ray crystallography. Copyright © 2001 John Wiley & Sons, Ltd.

chemistry.chemical_classificationChloroformHydrogen bondChemical shiftOrganic ChemistrySubstituentHydrazoneTautomerchemistry.chemical_compoundchemistryComputational chemistryAb initio quantum chemistry methodsMoietyPhysical and Theoretical ChemistryJournal of Physical Organic Chemistry
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Measurement of cloud point temperature in polymer solutions.

2013

A temperature-controlled turbidity measurement apparatus for the characterization of polymer solutions has been instrumented and set up. The main features are the coupled temperature-light transmittance measurement and the accurate temperature control, achieved by means of peltier cells. The apparatus allows to measure cloud point temperatures by adopting different cooling protocols: low rate for quasi-equilibrium measurements and high rate for detect kinetic effects. A ternary polymeric solution was adopted as case study system showing that cooling rate affects the measured cloud point temperature.

chemistry.chemical_classificationCloud pointTurbidity MeasurementTemperature controlMaterials sciencechemistryThermoelectric effectTransmittancePolymerTernary operationInstrumentationTemperature measurementComputational physicsThe Review of scientific instruments
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Electrospray Ionization Mass Spectrometry of Non-Covalent Complexes Formed between N-Alkylimidazolium-Containing Zwitterionic Sulfonates and Protonat…

2015

This paper describes non-covalent complexes between zwitterionic 3-(1-alkyl-3 N-imidazolio)-propane-1-sulfonates and different amines. Electrospray ionization (ESI) mass spectrometry and collision-induced dissociation were used to measure the stability of such complexes in solution and in the gas phase. Generally, zwitterionic sulfonates formed more abundant complexes with protonated 5-methylcytosine (5-MCH) than with aliphatic amines. The results show that the association constants and half-dissociation threshold energies of these complexes nonlinearly depend on the alkyl chain length of the zwitterion. It is shown that the complexes with the lowest stability exist in acetonitrile solutio…

chemistry.chemical_classificationCollision-induced dissociationHydrogen bondElectrospray ionizationProtonationGeneral MedicineMass spectrometryAtomic and Molecular Physics and OpticsDissociation (chemistry)chemistry.chemical_compoundchemistryComputational chemistryZwitterionSpectroscopyAlkylEuropean Journal of Mass Spectrometry
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New Tools for Streamlined In Vivo Homing Peptide Identification

2021

In vivo peptide-phage display is an unbiased technique for mapping of the vascular diversity and identification of homing peptides. This chapter is intended to serve as a structured practical guide to execute in vivo T7 phage biopanning and data analysis experiments. We discuss experimental designs and protocols with emphasis on application of high-throughput sequencing-based technologies for streamlined in vivo biopanning and validation of homing peptides.

chemistry.chemical_classificationComputingMethodologies_PATTERNRECOGNITIONT7 bacteriophagechemistryIn vivoComputer sciencePeptideIdentification (biology)BiopanningComputational biologyHoming (hematopoietic)
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Polymer solutions confined in slit-like pores with attractive walls: An off-lattice Monte Carlo study of static properties and chain dynamics

1996

Using a bead spring model of flexible polymer chains, the density profiles and chain configurational properties of polymer solutions confined between parallel plates were studied. A wide range of density ϕ, chain length N, and strength e of a short-range attractive wall potential was investigated. Both a temperature T in the good solvent regime (T > θ, θ being the Theta temperature where a chain in unconfined bulk three-dimensional solution would behave ideally) and a temperature in the bad solvent regime (T θ) show a crossover from two-dimensional excluded volume behavior (Rg ∝ N2ν with ν = 3/4) to ideal random walk behavior (ν = 1/2), the relaxation times show effective exponents Zeff (τ …

chemistry.chemical_classificationCondensed matter physicsChemistryDiffusionMonte Carlo methodTheta solventPolymerPolymer adsorptionRandom walkComputer Science ApplicationsCondensed Matter::Soft Condensed MatterComputational Theory and MathematicsExcluded volumeRelaxation (physics)General Materials ScienceJournal of Computer-Aided Materials Design
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Metamagnetic Behavior in [M (tvp) (NCS)2] Coordination Polymers (M = Fe(II) and Co(II); tvp = 1,2-di-(4-pyridyl)-ethylene)

1999

Abstract We report the synthesis and magnetic properties of two new coordination polymers of formula [M(tvp)(NCS)2] (M = Fe(II) and Co(II)). The magnetic data reveal the occurrence of metamagnetic behavior. Switching from bulk antiferromagnetic to ferromagnetic behavior occurs for magnetic fields greater than 1300 G (Fe(II)) and 450 G (Co(II)) at temperatures lower than 4 K. Both compounds are isomorphous. A molecular structure is suggested in the light of the magnetic properties and precedent data on related systems.

chemistry.chemical_classificationCoordination polymerStereochemistryPolymerComputer Science::Computational GeometryCondensed Matter PhysicsMagnetic susceptibilityMagnetic fieldCrystallographychemistry.chemical_compoundchemistryFerromagnetismMoleculeAntiferromagnetismCondensed Matter::Strongly Correlated ElectronsMetamagnetismMolecular Crystals and Liquid Crystals Science and Technology. Section A. Molecular Crystals and Liquid Crystals
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Effective pair potential between charged nanoparticles at high volume fractions

2017

Simulations of charged colloidal dispersions are technically challenging. One possible workaround consists in reducing the system to the colloids only, whose interactions are described through an effective pair potential, wf. Still, the determination of wf is difficult mainly because it depends on the colloidal density, ϕ. Here we propose to calculate wf from simulations of a pair of colloids placed in a cubic box with periodic boundary conditions. The variation in ϕ is mimicked by an appropriate change in the concentration of counterions neutralized by an homogeneous background charge. The method is tested at the level of the primitive model. A good description of the structure of the coll…

chemistry.chemical_classificationCouplingdigestive oral and skin physiologyGeneral Physics and AstronomyNanoparticle02 engineering and technology010402 general chemistry021001 nanoscience & nanotechnologycomplex mixtures01 natural sciences0104 chemical sciencesColloidchemistryVolume (thermodynamics)HomogeneousChemical physicsComputational chemistryPeriodic boundary conditions[PHYS.PHYS.PHYS-CHEM-PH]Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]Physical and Theoretical ChemistryCounterion0210 nano-technologyPair potentialComputingMilieux_MISCELLANEOUSPhysical Chemistry Chemical Physics
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Theoretical study of the OH addition to the β-pinene

2004

The initial step of the mechanism of the OH + β-pinene gas-phase reaction was investigated by means of ab initio calculations. Four different possibilities for the OH addition to the double bond are discussed, corresponding to the addition on each C atom of the double bond, and for each one, either the syn or anti OH attack to the two methyl groups on the (bi)cyclic molecule. Energy barriers calculated at the QCISD(T)/6-31G(d) level of theory on UMP2/6-31G(d) optimised structures, show that there are preferred orientations for the OH addition under atmospheric conditions of temperature and pressure.

chemistry.chemical_classificationCrystallographyPinenechemistry.chemical_compoundTemperature and pressurechemistryDouble bondAb initio quantum chemistry methodsComputational chemistryAtomGeneral Physics and AstronomyMoleculePhysical and Theoretical ChemistryChemical Physics Letters
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Effect of t-BuS vs. n-BuS on the topology, Cu⋯Cu distances and luminescence properties of 2D Cu4I4/RS(CH2)4SR metal–organic frameworks

2011

CuI reacts with RS(CH2)4SR (R = n-Bu (L1); t-Bu (L2)) to afford the 2D coordination polymers [Cu4I4{μ-RS(CH2)4SR}2]n (R = n-Bu (1); t-Bu (2)). Their grid networks exhibit nodal Cu4(μ3-I)4 clusters interconnected by dithioethers with mean Cu⋯Cu distances of 2.7265(10) and 2.911(2) A for 1 and 2, respectively. This difference translates in a blue shift of the solid state emission bands and a decrease in emission lifetimes when trading R = n-Bu to the bulky t-Bu.

chemistry.chemical_classificationCrystallographychemistryComputational chemistryMaterials ChemistrySolid-stateMetal-organic frameworkGeneral ChemistryPolymerLuminescenceCatalysisTopology (chemistry)BlueshiftNew Journal of Chemistry
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Spectrophotometric determination of binding constants between some aminocyclodextrins and nitrobenzene derivatives at various pH values

2002

Abstract The inclusion capacity of three modified cyclodextrins—namely mono-(6- N , N -dimethylamino-6-deoxy)- ( 3 ), mono-6-(2-aminoethyl)-amino-6-deoxy- ( 4 ) and mono-6-(2- N , N -dimethylaminoethyl)-amino-6-deoxy- ( 5 ) β-cyclodextrin, with six para -substituted nitrobenzenes ( A – F ) has been investigated at three different pH values. Molecular interactions in inclusion complexes have also been investigated by means of molecular mechanics (MM2/QD) models. The desolvation of the cyclodextrin is the most important factor in determining the binding ability of the various hosts. However, for a given host, electrostatic and van der Waals interactions and the formation of a hydrogen bond be…

chemistry.chemical_classificationCyclodextrinHydrogen bondOrganic ChemistrySettore CHIM/06 - Chimica OrganicaBiochemistryBinding constantMedicinal chemistryMolecular mechanicscyclodextrins inclusion molecular mechanicsNitrobenzenesymbols.namesakechemistry.chemical_compoundchemistryComputational chemistryDrug DiscoverysymbolsNon-covalent interactionsDesolvationvan der Waals force
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