Search results for "cytoplasm"

showing 10 items of 659 documents

The nucleocytoplasmic shuttling of the La antigen in CV-I cells

1987

ChemistryGeneticsNucleocytoplasmic ShuttlingGeneral MedicineLA antigenMolecular BiologyCell biologyMolecular Biology Reports
researchProduct

Engineering of a Promoter Repressed by a Light-Regulated Transcription Factor in Escherichia coli

2021

Light-regulated gene expression systems allow controlling gene expression in space and time with high accuracy. Contrary to previous synthetic light sensors that incorporate two-component systems which require localization at the plasma membrane, soluble one-component repression systems provide several advantageous characteristics. Firstly, they are soluble and able to diffuse across the cytoplasm. Secondly, they are smaller and of lower complexity, enabling less taxing expression and optimization of fewer parts. Thirdly, repression through steric hindrance is a widespread regulation mechanism that does not require specific interaction with host factors, potentially enabling implementation…

ChemistryPromoterGeneral MedicineQH426-470medicine.disease_causeCell biologyInteraction with hostCytoplasmRNA polymerase bindingGene expressionGeneticsmedicineEscherichia coliPsychological repressionTranscription factorTP248.13-248.65BiotechnologyBioDesign Research
researchProduct

Vesicular Storage and Release of Cholinergic False Transmitters

1979

Publisher Summary Several analogues of choline are known, which are taken up by cholinergic nerve terminals and released in the acetylated form on stimulation. Such compounds are thus precursors of cholinergic false transmitters. This chapter discusses two compounds, N-methyl-N-2-hydroxyethylpyrrolidiniu (mPCh) and homocholine (HCh), using guinea-pig cortex and the electric organ of Torpedo marmorata. In the experiments with cortex, the false transmitter precursors were injected into the tissue and released transmitters collected in Locke solution applied to the surface of the cortex in plastic sleeves. Free vesicles and those attached to external membranes were isolated from tissue subjace…

ChemistryVesicleStimulationAnatomylaw.inventionchemistry.chemical_compoundMembranemedicine.anatomical_structureCytoplasmlawCortex (anatomy)BiophysicsmedicineCholinergicCholineTorpedo
researchProduct

Ribosome Heterogeneity in Plant and Animal Organisms. Its Relationship to Ribosomal Ambiguity and to Ribosome Evolution

1970

Abstract The data presented and discussed in this report summarize evidence showing that ribosomes isolated from several eucaryotic (plant and animal) organisms exhibit ample variations of the composition of their protein moiety and that the degree of dissimilarity correlates with the degree of taxonomic kinship of the organisms from which the ribosomes were derived. They also provide evidence that (a) the 80-S ribosomes isolated from the cytoplasmic matrix of higher plants and yeast and the 70-S ribosomes derived from both chloroplasts and mitochondria are endowed with highly dissimilar protein complements, (b) the organellar (67-S) ribosomes derived from the chloroplasts of more or less d…

ChloroplastCytosolBiochemistryCytoplasmEukaryotic Large Ribosomal Subunitfood and beveragesPlant ScienceMitochondrionRibosomal RNABiologyEukaryotic RibosomeRibosomeEcology Evolution Behavior and SystematicsGiornale botanico italiano
researchProduct

Mg2+-binding shifts the IM30 activity from membrane protection to membrane destabilization

2020

ABSTRACTThe inner membrane-associated protein of 30 kDa (IM30) is essential in chloroplasts and cyanobacteria. The spatio-temporal cellular localization of the protein appears to be highly dynamic and triggered by internal as well as external stimuli, mainly light intensity. A soluble fraction of the protein is localized in the cyanobacterial cytoplasm or the chloroplast stroma, respectively. Additionally, the protein attaches to the thylakoid membrane as well as to the chloroplast inner envelope or the cyanobacterial cytoplasmic membrane, respectively, especially under conditions of membrane stress. IM30 is involved in thylakoid membrane biogenesis and/or maintenance, where it either stabi…

ChloroplastLight intensityChloroplast stromaMembraneCytoplasmChemistryThylakoidBiophysicsLipid bilayer fusionCellular localization
researchProduct

Automatic detection of large dense-core vesicles in secretory cells and statistical analysis of their intracellular distribution.

2010

Analyzing the morphological appearance and the spatial distribution of large dense-core vesicles (granules) in the cell cytoplasm is central to the understanding of regulated exocytosis. This paper is concerned with the automatic detection of granules and the statistical analysis of their spatial locations in different cell groups. We model the locations of granules of a given cell as a realization of a finite spatial point process and the point patterns associated with the cell groups as replicated point patterns of different spatial point processes. First, an algorithm to segment the granules using electron microscopy images is proposed. Second, the relative locations of the granules with…

Chromaffin CellsInformation Storage and RetrievalBiologyBioinformaticsModels BiologicalSensitivity and SpecificityPoint processExocytosislaw.inventionPattern Recognition AutomatedMicelawArtificial IntelligenceImage Interpretation Computer-AssistedGeneticsAnimalsSecretionChromaffin GranulesComputer SimulationCells CulturedModels StatisticalApplied MathematicsVesicleSecretory VesiclesReproducibility of ResultsImage EnhancementEmpirical distribution functionMicroscopy ElectronAnimals NewbornCytoplasmData Interpretation StatisticalElectron microscopeBiological systemIntracellularAlgorithmsBiotechnologyIEEE/ACM transactions on computational biology and bioinformatics
researchProduct

Isolation and partial characterization of uronic acid-containing glycoproteins from Mucor rouxii.

1995

Five different fractions containing uronic acids associated with protein were isolated from the cytoplasm of the filamentous form of Mucor rouxii. A signle fraction was isolated from the cell wall by hot sodium dodecyl sulfate followed by ion exchange column chromatography. Two cytoplasmic entities (peaks I and II) were not adsorbed to DEAE Bio-Gel A. The molecular mass of peaks I to V ranged from 16.5 to 210 kDa. The protein-uronic acid ratios were different for each fraction. The cell wall fraction showed a molecular mass of 16.5 kDa, similar to that of peak II but with differences in chromatographic behavior and protein-uronic acid ratio. The possible role of these molecules as acceptors…

ChromatographyMolecular massIon exchangeFraction (chemistry)General MedicineUronic acidGlucuronic acidApplied Microbiology and BiotechnologyMicrobiologyCell wallFungal Proteinschemistry.chemical_compoundUronic AcidschemistryBiochemistryCytoplasmMucorSodium dodecyl sulfateCurrent microbiology
researchProduct

Sorting signals in the cytosolic tail of plant p24 proteins involved in the interaction with the COPII coat.

2004

The ability of the cytosolic tail of a plant p24 protein to bind COPI and COPII subunits from plant and animal sources in vitro has been examined. We have found that a dihydrophobic motif in the -7,-8 position (relative to the cytosolic carboxy-terminus), which strongly cooperates with a dilysine motif in the -3,-4 position for COPI binding, is required for COPII binding. In addition, we show that COPI and COPII coat proteins from plant cytosol compete for binding to the sorting motifs in these tails. Only in the absence of the dilysine motif in the -3,-4 position or after COPI depletion could we observe COPII binding to the p24 tail. This competition is not observed when using rat liver cy…

CoatPhysiologyAmino Acid MotifsArabidopsisReceptors Cytoplasmic and NuclearPlant ScienceBiologyCoat Protein Complex ICytosolAnimalsCOPIIBinding SitesVesicular-tubular clusterArabidopsis ProteinsCell BiologyGeneral MedicineCOPIPlant cellIn vitroPeptide FragmentsCell biologyRatsCytosolProtein TransportRat liverCOP-Coated VesiclesProtein BindingSignal TransductionPlantcell physiology
researchProduct

Quantitative Analysis of Dynamic Association in Live Biological Fluorescent Samples

2014

Determining vesicle localization and association in live microscopy may be challenging due to non-simultaneous imaging of rapidly moving objects with two excitation channels. Besides errors due to movement of objects, imaging may also introduce shifting between the image channels, and traditional colocalization methods cannot handle such situations. Our approach to quantifying the association between tagged proteins is to use an object-based method where the exact match of object locations is not assumed. Point-pattern matching provides a measure of correspondence between two point-sets under various changes between the sets. Thus, it can be used for robust quantitative analysis of vesicle …

Computer and Information SciencesFluorescence-lifetime imaging microscopyMatching (graph theory)Cell SurvivalImage ProcessingAssociation (object-oriented programming)SciencerakkulatBioinformaticsTime-Lapse ImagingFluorescenceImage (mathematics)cellular structuresfluorescence imagingCell Line TumorMolecular Cell BiologyalgoritmitHumansComputer SimulationkuvantamismenetelmätPhysicsta113MicroscopyvesiclesMultidisciplinarySoftware Toolsbusiness.industryCytoplasmic VesiclesQRta1182Biology and Life SciencesSoftware EngineeringColocalizationExperimental dataPattern recognitionCell BiologyObject (computer science)imaging techniquesMolecular ImagingfluoresenssimikroskopiaSignal ProcessingEngineering and TechnologyMedicineArtificial intelligenceCellular Structures and OrganellesbusinessVesicle localizationResearch ArticlePLoS ONE
researchProduct

Sorting signals in the cytosolic tail of membrane proteins involved in the interaction with plant ARF1 and coatomer.

2004

Summary In mammals and yeast, a cytosolic dilysine motif is critical for endoplasmic reticulum (ER) localization of type I membrane proteins. Retrograde transport of type I membrane proteins containing dilysine motifs at their cytoplasmic carboxy (C)-terminal tail involves the interaction of these motifs with the COPI coat. The C-terminal dilysine motif has also been shown to confer ER localization to type I membrane proteins in plant cells. Using in vitro binding assays, we have analyzed sorting motifs in the cytosolic tail of membrane proteins, which may be involved in the interaction with components of the COPI coat in plant cells. We show that a dilysine motif in the −3,−4 position (rel…

CooperativityPlant ScienceBiologyCoatomer Proteinchemistry.chemical_compoundGeneticsAmino Acid SequencePlant ProteinsBinding SitesSequence Homology Amino AcidEndoplasmic reticulumProtoplastsMembrane ProteinsOryzaCell BiologyEndoplasmic reticulum localizationCOPIBrefeldin APeptide FragmentsCell biologyKineticsProtein SubunitsMembrane proteinchemistryAmino Acid SubstitutionCoatomerCytoplasmADP-Ribosylation Factor 1Sequence AlignmentSignal TransductionThe Plant journal : for cell and molecular biology
researchProduct