Search results for "ddc:"

showing 10 items of 3080 documents

The Low Barrier Hydrogen Bond in the Photoactive Yellow Protein: A Vacuum Artifact Absent in the Crystal and Solution

2016

Journal of the American Chemical Society 138(51), 16620 - 16631 (2016). doi:10.1021/jacs.6b05609

Models Molecularphotoactive yellow proteinlow-barrier hydrogen bondVacuumHydrogenProtein ConformationLow-barrier hydrogen bondNeutron diffractionchemistry.chemical_elementProtonationCrystallography X-RayPhotoreceptors Microbial010402 general chemistry01 natural sciencesBiochemistryCatalysisColloid and Surface ChemistryProtein structureBacterial Proteins0103 physical sciencesta116Photoactive yellow proteinvetysidokset010304 chemical physicsHydrogen bondChemistryHydrogen BondingGeneral Chemistry5400104 chemical sciencesSolutionsCrystallographyhydrogen bondsddc:540Proton NMRArtifactsJournal of the American Chemical Society
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Rapid hyperpolarization and purification of the metabolite fumarate in aqueous solution

2020

Significance Magnetic resonance imaging is hindered by inherently low sensitivity, which limits the method for the most part to observing water molecules in the body. Hyperpolarized molecules exhibit strongly enhanced MRI signals which opens the door for imaging low-concentration species in vivo. Biomolecules can be hyperpolarized and injected into a patient allowing for metabolism to be tracked in real time, greatly expanding the information available to the radiologist. Parahydrogen-induced polarization (PHIP) is a hyperpolarization method renowned for its low cost and accessibility, but is generally limited by low polarization levels, modest molecular concentrations, and contamination by…

Molar concentrationparahydrogen02 engineering and technologyBiosensing Techniques010402 general chemistry01 natural sciencesChemical reaction41003 medical and health sciences0302 clinical medicineFumaratesHyperpolarization (physics)Carbon-13 Magnetic Resonance SpectroscopyPolarization (electrochemistry)DissolutionhyperpolarizationBiomarker; Hyperpolarization; Metabolism; MRI; Parahydrogen; Fumarates; Molecular Imaging; Solutions; Water; Biosensing Techniques; Carbon-13 Magnetic Resonance Spectroscopychemistry.chemical_classificationParahydrogenMultidisciplinaryAqueous solutionChemistryBiomolecule500WaterBiomarker021001 nanoscience & nanotechnologyCombinatorial chemistryMolecular Imaging0104 chemical sciencesSolutionsSolventChemistryHyperpolarizationMetabolism030220 oncology & carcinogenesisReagentPhysical Sciencesbiomarkerddc:5000210 nano-technologymetabolismBiosensorMRI
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Deciphering the Rules Underlying Xenogeneic Silencing and Counter-Silencing of Lsr2-like Proteins Using CgpS of Corynebacterium glutamicum as a Model

2020

In actinobacteria, Lsr2-like nucleoid-associated proteins function as xenogeneic silencers (XS) of horizontally acquired genomic regions, including viral elements, virulence gene clusters in Mycobacterium tuberculosis, and genes involved in cryptic specialized metabolism in Streptomyces species. Consequently, a detailed mechanistic understanding of Lsr2 binding in vivo is relevant as a potential drug target and for the identification of novel bioactive compounds. Here, we followed an in vivo approach to investigate the rules underlying xenogeneic silencing and counter-silencing of the Lsr2-like XS CgpS from Corynebacterium glutamicum. Our results demonstrated that CgpS distinguishes between…

Molecular Biology and PhysiologyGene Transfer HorizontalactinobacteriaMicrobiologyQR1-502Corynebacterium glutamicumDNA-Binding Proteinsregulatory networksBacterial Proteinslsr2ddc:570xenogeneic silencinghorizontal gene transferGene Silencingcounter-silencingat-rich dnaProtein BindingTranscription FactorsResearch ArticlemBio
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Local structure and dynamics of wurtzite‐type ZnO from simulation‐based EXAFS analysis

2014

Conventional methods of EXAFS data analysis are often limited to the nearest coordination shells of the absorbing atom due to the difficulties in accurate accounting for the so-called multiple-scattering effects. Besides, it is often difficult to resolve the non-equivalent groups of atoms in a single coordination shell due to strong correlation between structural parameters. In this study we overcome these problems by applying two different simulation-based methods, i.e., classical molecular dynamics (MD) and reverse Monte with evolutionary algorithm (EA), to the analysis of the Zn K-edge EXAFS data for wurtzite-type bulk ZnO. The RMC/EA-EXAFS method allowed us to separate the contributions…

Molecular dynamicsCrystallographyNanostructureExtended X-ray absorption fine structureChemical physicsChemistryThermalAtomShell (structure)ddc:530Reverse Monte CarloCondensed Matter PhysicsWurtzite crystal structurephysica status solidi c
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Electroburning of few-layer graphene flakes, epitaxial graphene, and turbostratic graphene discs in air and under vacuum

2015

Graphene-based electrodes are very promising for molecular electronics and spintronics. Here we report a systematic characterization of the electroburning (EB) process, leading to the formation of nanometer-spaced gaps, on different types of few-layer graphene (namely mechanically exfoliated graphene on SiO2, graphene epitaxially grown on the C-face of SiC and turbostratic graphene discs deposited on SiO2) under air and vacuum conditions. The EB process is found to depend on both the graphene type and on the ambient conditions. For the mechanically exfoliated graphene, performing EB under vacuum leads to a higher yield of nanometer-gap formation than working in air. Conversely, for graphene…

Molecular spintronicsmolecular spintronicsMaterials sciencemolecular electronicsMolecular electronicsGeneral Physics and AstronomyNanotechnologylcsh:Chemical technologyEpitaxyGraphene based electrodeslcsh:TechnologyFull Research PaperGraphene; Graphene based electrodes; Molecular electronics; Molecular spintronics; Materials Science (all); Electrical and Electronic Engineering; Physics and Astronomy (all)law.inventionPhysics and Astronomy (all)lawNanotechnologylcsh:TP1-1185ddc:530General Materials ScienceElectrical and Electronic Engineeringlcsh:ScienceComputingMilieux_MISCELLANEOUSGraphene oxide paper[PHYS]Physics [physics]lcsh:TGraphenegraphene based electrodesPhysicsGraphene foamMolecular electronicslcsh:QC1-999NanoscienceElectrodelcsh:QMaterials Science (all)GrapheneBilayer graphenelcsh:PhysicsGraphene nanoribbons
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Helicates with Ether-Substituted Catechol Esters as Ligands

2020

European journal of organic chemistry 2020(32), 5161-5172 (2020). doi:10.1002/ejoc.202000843

Molecular switchCatecholesteritOrganic ChemistryEtherkompleksiyhdisteet540Combinatorial chemistrymolecular switchhelicatethermodynamicschemistry.chemical_compoundlitiumchemistrytermodynamiikkatemplatingddc:540supramolekulaarinen kemiacatecholatePhysical and Theoretical Chemistry
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Electromagnetic properties of low-lying states in neutron-deficient Hg isotopes: Coulomb excitation of Hg-182, Hg-184, Hg-186 and Hg-188

2019

The neutron-deficient mercury isotopes serve as a classical example of shape coexistence, whereby at low energy near-degenerate nuclear states characterized by different shapes appear. The electromagnetic structure of even-mass 182-188 Hg isotopes was studied using safe-energy Coulomb excitation of neutron-deficient mercury beams delivered by the REX-ISOLDE facility at CERN. The population of $ 0^{+}_{1,2}$01,2+, $ 2^{+}_{1,2}$21,2+and $ 4^{+}_{1}$41+states was observed in all nuclei under study. Reduced E2 matrix elements coupling populated yrast and non-yrast states were extracted, including their relative signs. These are a sensitive probe of shape coexistence and may be used to validate…

MomentsIntruder01 natural sciencesMOMENTSNuclear ExperimentPhysicseducation.field_of_studyYrastBohr modelLIFETIMESddc:Mean field theorysymbolsFísica nuclearAtomic physicsydinfysiikkaConfigurationNuclear and High Energy PhysicsELECTRIC-MONOPOLE TRANSITIONS3106PopulationElectric-monopole transitionsDEFORMED BANDSLifetimesCoulomb excitationNUCLEAR[PHYS.NEXP]Physics [physics]/Nuclear Experiment [nucl-ex]114 Physical sciencessymbols.namesakeIsomerismSHAPE COEXISTENCE0103 physical sciencesNuclear fusionNuclear Physics - ExperimentNeutronNuclear010306 general physicseducationCONFIGURATIONDeformed bands010308 nuclear & particles physicsINTRUDERShape coexistence2207 Física Atómica y NuclearDecayPhysics and Astronomy13. Climate actionISOMERISMInteracting boson modelDECAY
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Ultra-short ion-exchange columns for fast charge variants analysis of therapeutic proteins

2021

Abstract The purpose of this work was to study the potential of recently developed ultra-short column hardware for ion exchange chromatography (IEX). Various prototype and commercial columns having lengths of 5, 10, 15, 20 and 50 mm and packed with non-porous 3 µm particles were systematically compared. Both pH and salt gradient modes of elution were evaluated. Similarly, what has been previously reported for reversed phase liquid chromatography (RPLC) mode, an “on-off” retention mechanism was observed in IEX for therapeutic proteins and their fragments (25–150 kDa range). Because of the non-porous nature of the IEX packing material, the column porosity was relatively low (e = 0.42) and the…

Monoclonal antibodyChromatography Reverse-PhaseRange (particle radiation)ddc:615ChromatographyIon exchangeChemistryElutionOrganic ChemistryIon chromatographyIon-exchange chromatographyGeneral MedicineReversed-phase chromatographyChromatography Ion ExchangeBiochemistryUltra-short columnExtra-column volumeAnalytical ChemistryVolume (thermodynamics)PeekPorosityFast separationPorosityChromatography High Pressure Liquid
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Ion-ion correlation and charge reversal at titrating solid interfaces

2009

Confronting grand canonical titration Monte Carlo simulations (MC) with recently published titration and charge reversal (CR) experiments on silica surfaces by Dove et al. and van der Heyden it et al, we show that ion-ion correlations quantitatively explain why divalent counterions strongly promote surface charge which, in turn, eventually causes a charge reversal (CR). Titration and CR results from simulations and experiments are in excellent agreement without any fitting parameters. This is the first unambiguous evidence that ion-ion correlations are instrumental in the creation of highly charged surfaces and responsible for their CR. Finally, we show that charge correlations result in "a…

Monte Carlo methodFOS: Physical sciencesBinary compoundThermodynamics02 engineering and technologyCondensed Matter - Soft Condensed Matter010402 general chemistry01 natural sciencesIonchemistry.chemical_compoundComputational chemistryElectrochemistryTheoretical chemistryGeneral Materials ScienceSurface chargeSpectroscopyCondensed Matter - Statistical Mechanicschemistry.chemical_classificationStatistical Mechanics (cond-mat.stat-mech)Charge (physics)Surfaces and Interfaces021001 nanoscience & nanotechnologyCondensed Matter Physics0104 chemical sciences[ PHYS.PHYS.PHYS-CHEM-PH ] Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]chemistryddc:540Soft Condensed Matter (cond-mat.soft)Titration[PHYS.PHYS.PHYS-CHEM-PH]Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]Counterion0210 nano-technology
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Effects of school-based interventions on motivation towards physical activity in children and adolescents: Protocol for a systematic review

2019

Background Recent studies have observed low levels of physical activity in children and adolescents worldwide. Physical activity interventions are increasingly carried out to counteract this development. The school environment is an ideal setting for such interventions to take place as large numbers of children and adolescents can be addressed. With the assumption that motivation is the key to initiate and sustain beneficial health behaviors, theory-based intervention studies apply motivational strategies to increase students’ participation in physical activity. The main objective of this systematic review will be to analyze the effects of school-based physical activity interventions on a v…

MotivationBoysSchoolsYouthAdolescentHealth BehavioreducationGirlslcsh:RBoylcsh:MedicineCochraneMedizinische FakultätRandomized controlled trialGirlProtocolHumansPRISMA-Pddc:610StudentChildStudentsExercise
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