Search results for "density functional"

showing 10 items of 1070 documents

Molecular precursors of mesostructured silica materials in the atrane route: A DFT/GIAO/NBO theoretical study

2007

Abstract Quantum chemical calculations using density functional theory have been carried out to investigate two assumed molecular precursors and identified as silatranes (N[OCH2CH2]3Si–OCH2CH2N–(CH2CH2OH)2 and N[OCH2CH2]3Si–OCH2CH2N–(CH2CH2OH)2Na+) which are present in the synthesis of mesoporous silica based material namely “the atrane route”. One of the ways in this synthesis leads to the well-known MCM-41. Additionally, in this work has been also investigated two others molecules such as triethanolamine (TEAH3) and sodatrane which are present in the medium. Gas phase and solution equilibrium geometries of the previous molecules were fully optimized at B3LYP level, modeling solvent effect…

Chemical shiftCondensed Matter PhysicsBiochemistrychemistry.chemical_compoundSolvation shellAtranechemistryComputational chemistryMoleculeDensity functional theoryPhysical and Theoretical ChemistrySolvent effectsBasis setNatural bond orbitalJournal of Molecular Structure: THEOCHEM
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DFT calculation of structures and NMR chemical shifts of simple models of small diameter zigzag single wall carbon nanotubes (SWCNTs)

2011

Linearly conjugated benzene rings (acenes), belt-shape molecules (cyclic acenes) and model single wall carbon nanotubes (SWCNTs) were fully optimized at the unrestricted level of density functional theory (UB3LYP/6-31G*). The models of SWCNTs were selected to get some insight into the potential changes of NMR chemical shift upon systematic increase of the molecular size. The theoretical NMR chemical shifts were calculated at the B3LYP/pcS-2 level of theory using benzene as reference. In addition, the change of radial breathing mode (RBM), empirically correlated with SWCNT diameter, was directly related with the radius of cyclic acenes. Both geometrical and NMR parameters were extrapolated t…

Chemical shiftGeneral ChemistryCarbon nanotubeCarbon-13 NMRConjugated systemlaw.inventionBond lengthchemistry.chemical_compoundchemistryComputational chemistrylawMoleculePhysical chemistryGeneral Materials ScienceDensity functional theoryBenzeneMagnetic Resonance in Chemistry
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Giant Mechanocaloric Effects in Fluorite-Structured Superionic Materials

2016

Mechanocaloric materials experience a change in temperature when a mechanical stress is applied on them adiabatically. Thus, far, only ferroelectrics and superelastic metallic alloys have been considered as potential mechanocaloric compounds to be exploited in solid-state cooling applications. Here we show that giant mechanocaloric effects occur in hitherto overlooked fast ion conductors (FIC), a class of multicomponent materials in which above a critical temperature, Ts, a constituent ionic species undergoes a sudden increase in mobility. Using first-principles and molecular dynamics simulations, we found that the superionic transition in fluorite-structured FIC, which is characterized by …

Chemical substanceMaterials scienceCondensed matter physicsMechanical EngineeringIonic bondingBioengineering02 engineering and technologyGeneral Chemistry021001 nanoscience & nanotechnologyCondensed Matter Physics01 natural scienceslaw.inventionMolecular dynamicslaw0103 physical sciencesUltimate tensile strengthFast ion conductorFrenkel defectGeneral Materials ScienceDensity functional theoryHydrostatic equilibrium010306 general physics0210 nano-technologyNano Letters
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Short hydrogen bonds enhance nonaromatic protein-related fluorescence

2021

Significance Intrinsic fluorescence of nonaromatic amino acids is a puzzling phenomenon with an enormous potential in biophotonic applications. The physical origins of this effect, however, remain elusive. Herein, we demonstrate how specific hydrogen bond networks can modulate fluorescence. We highlight the key role played by short hydrogen bonds, present in the protein structure, on the ensuing fluorescence. We provide detailed experimental and molecular evidence to explain these unusual nonaromatic optical properties. Our findings should benefit the design of novel optically active biomaterials for applications in biosensing and imaging.

Chemical transformationOptics and PhotonicsGlutamineIntrinsic fluorescenceMolecular Dynamics SimulationPhotochemistryFluorescenceAb initio molecular dynamicsAmmoniaHumansSingle amino acidshort hydrogen bondDensity Functional TheoryMultidisciplinaryHydrogen bondChemistryintrinsic fluorescenceultraviolet fluorescenceHydrogen BondingConical intersectionFluorescenceBiophysics and Computational BiologyExcited statePhysical Sciences408PeptidesProceedings of the National Academy of Sciences of the United States of America
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ZrO2 Acting as a Redox Catalyst

2016

Surface defects are discussed and reviewed with regards to the use of ZrO2 in applications involving interactions with CO, H2, CH4, CO2, water and hydrocarbons. Studies of catalytic partial oxidation of methane reveal that part of the surface lattice oxygen in terraces can be removed by methane at high temperatures (e.g. 900 °C). The reaction proceeds via a surface confined redox mechanism. The studies presented here also highlight that defects play a decisive role in the water–gas-shift reaction, since the reaction is likely carried out via OH groups present at defect sites, which are regenerated by dissociating water. Hydroxyl chemistry on ZrO2 is briefly reviewed related to the studies p…

Chemistry(all)Tar oxidationInorganic chemistryHydroxyl groups02 engineering and technology010402 general chemistry01 natural sciencesRedoxCatalysisMethaneDissociation (chemistry)CatalysisRedoxHSchemistry.chemical_compoundAdsorptionZrO2Partial oxidationbiologyH2SCPOMActive siteGeneral ChemistryZrO021001 nanoscience & nanotechnology0104 chemical scienceschemistrybiology.proteinDensity functional theory0210 nano-technologyWGSTopics in Catalysis
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Large-Cavity Coronoids with Different Inner and Outer Edge Structures

2020

Coronoids, polycyclic aromatic hydrocarbons with geometrically defined cavities, are promising model structures of porous graphene. Here, we report the on-surface synthesis of C168 and C140 coronoids, referred to as [6]- and [5]coronoid, respectively, using 5,9-dibromo-14-phenylbenzo[m]tetraphene as the precursor. These coronoids entail large cavities (>1 nm) with inner zigzag edges, distinct from their outer armchair edges. While [6]coronoid is planar, [5]coronoid is not. Low-temperature scanning tunneling microscopy/spectroscopy and noncontact atomic force microscopy unveil structural and electronic properties in accordance with those obtained from density functional theory calculation…

Chemistry530 PhysicsPorous grapheneCommunicationAromaticityGeneral ChemistryEdge (geometry)010402 general chemistry01 natural sciencesBiochemistryMolecular physicsCatalysis0104 chemical scienceslaw.inventionColloid and Surface ChemistryPlanarZigzaglaw540 ChemistryDensity functional theoryScanning tunneling microscopeSpectroscopyJournal of the American Chemical Society
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Geometric Structure and Torsional Potential of Biisothianaphthene. A Comparative DFT and ab Initio Study

1997

We present a study of the torsional potential of biisothianaphthene and compare it to that of bithiophene. The calculations are performed at the ab initio and semiempirical Hartree−Fock (HF), ab initio post-Hartree−Fock, and density functional theory (DFT) levels. Our study has two major aims:  (i) on the physico-chemical side, to asses the optimal conformation of biisothianaphthene and evaluate the rotational barriers toward coplanar structures and (ii) on the methodological side, to asses the usefulness of DFT approaches. In contrast to previous estimates, the torsional potential of biisothianaphthene is found to differ markedly from that of bithiophene. For biisothianaphthene, strongly r…

ChemistryAb initioStructure (category theory)General ChemistryBiochemistryMolecular physicsCatalysisCrystalColloid and Surface ChemistryComputational chemistryPhysics::Atomic and Molecular ClustersDensity functional theoryTorsional potentialConformational isomerismJournal of the American Chemical Society
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2017

The adsorption of molecular acceptors is a viable method for tuning the work function of metal electrodes. This, in turn, enables adjusting charge injection barriers between the electrode and organic semiconductors. Here, we demonstrate the potential of pyrene-tetraone (PyT) and its derivatives dibromopyrene-tetraone (Br-PyT) and dinitropyrene-tetraone (NO2-PyT) for modifying the electronic properties of Au(111) and Ag(111) surfaces. The systems are investigated by complementary theoretical and experimental approaches, including photoelectron spectroscopy, the X-ray standing wave technique, and density functional theory simulations. For some of the investigated interfaces the trends expecte…

ChemistryAnalytical chemistry02 engineering and technology021001 nanoscience & nanotechnology01 natural sciencesAcceptorSurfaces Coatings and FilmsElectronic Optical and Magnetic MaterialsOrganic semiconductorGeneral EnergyX-ray photoelectron spectroscopyChemical physicsElectron affinity0103 physical sciencesMonolayerElectrodeDensity functional theoryWork functionPhysical and Theoretical Chemistry010306 general physics0210 nano-technologyThe Journal of Physical Chemistry C
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Ab initio study of the electronic and atomic structure of the wolframite-type ZnWO4

2009

Abstract Ab initio quantum chemistry calculations of the structural and electronic properties of monoclinic wolframite-type ZnWO 4 crystal have been performed within the periodic linear combination of atomic orbitals (LCAO) method using six different Hamiltonians, based on density functional theory (DFT) and hybrid Hartree-Fock-DFT theory. The obtained results for optimized structural parameters, band gap and partial density of states are compared with available experimental data, and the best agreement is observed for hybrid Hamiltonians. The calculations show that zinc tungstate is a wide band gap material, with the direct gap about 4.6 eV, whose valence band has largely O 2p character, w…

ChemistryBand gapAb initioGeneral ChemistryElectronic structureCondensed Matter PhysicsQuantum chemistryLinear combination of atomic orbitalsAb initio quantum chemistry methodsPhysics::Atomic and Molecular ClustersMaterials ChemistryDensity functional theoryAtomic physicsMonoclinic crystal systemSolid State Communications
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A Comparative Analysis of the Electrophilicity of Organic Molecules between the Computed IPs and EAs and the HOMO and LUMO energies

2007

[EN] The electrophilicity index, omega, of a series of substituted ethylenes used in some relevant organic reactions has been evaluated from the ionization potential JP) and the electron affinity (EA) computed by vertical ionization at the B3LYP/aug-cc-PVTZ level. The corresponding electrophilicity values are well correlated with those obtained from the HOMO and LUMO energies of the neutral molecules. The good linear correlation found between omega(I,A) and omega(H,L)(LBS), and between omega(H,L)(LBS) and omega(H,L)(SBS) allows to confirm the use of the easily available B3LYP/6-31G(*) HOMO and LUMO energies to obtain reasonable values of the global electrophilicity index of organic molecule…

ChemistryBasis-SetsReactivityGeneral Physics and AstronomyScalesOrganic reactionDensity-Functional TheoryComputational chemistryHardnessIonizationElectron affinityElectrophileComputationMoleculeElectron-AffinitiesDensity functional theoryQuantitative characterizationPhysical and Theoretical ChemistryIonization energyHOMO/LUMO
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