Search results for "domu"

showing 10 items of 167 documents

An improved understanding of the Alaska Coastal Current: the application of a bivalve growth-temperature model to reconstruct freshwater-influenced p…

2011

Shells of intertidal bivalve mollusks contain sub-seasonally to interannually resolved records of temperature and salinity variations in coastal settings. Such data are essential to understand changing land-sea interactions through time, specifically atmospheric (precipitation rate, glacial meltwater, river discharge) and oceanographic circulation patterns; however, independent temperature and salinity proxies are currently not available. We established a model for reconstructing daily water temperatures with an average standard error of ∼1.3 °C based on variations in the width of lunar daily growth increments of Saxidomus gigantea from southwestern Alaska, United States. Temperature explai…

010504 meteorology & atmospheric sciencesbiologyDischargeTemperature salinity diagramsPaleontologyIntertidal zone010502 geochemistry & geophysicsbiology.organism_classification01 natural sciencesSaxidomus giganteaSalinityOceanography13. Climate action[SDE]Environmental SciencesSeawater14. Life underwaterGlacial periodMeltwaterEcology Evolution Behavior and SystematicsGeologyComputingMilieux_MISCELLANEOUS0105 earth and related environmental sciences
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Holocene climate and seasonality of shell collection at the Dundas Islands Group, northern British Columbia, Canada—A bivalve sclerochronological app…

2013

article i nfo To analyze environmental changes and the seasonality of shell collection in British Columbia during the Ho- locene, oxygen isotopes were measured from modern and archeological (1337-7438 cal yr BP) shells of the butter clam Saxidomus gigantea. 1697 discrete isotope samples were taken from two modern and 27 arche- ological shells with a high temporal resolution (sub-seasonal up to daily). Archeological shells were collected from five shell midden sites on the Dundas Islands Group, northern British Columbia, Canada. The oxygen iso- tope data reveal clear annual cycles, with the most positive δ 18 Oshell values occurring during the cold season (slower growth, annual growth line f…

010506 paleontology010504 meteorology & atmospheric sciencesTemperature salinity diagramsOceanography01 natural sciencesIsotopes of oxygenmedicine14. Life underwaterEcology Evolution Behavior and SystematicsHoloceneComputingMilieux_MISCELLANEOUS0105 earth and related environmental sciencesEarth-Surface ProcessesbiologyPaleontologySeasonalitymedicine.diseasebiology.organism_classificationSaxidomus giganteaMiddenSalinityOceanography13. Climate action[SDE]Environmental SciencesPeriod (geology)Geology
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Inter-site variability in the season of shellfish collection on the central coast of British Columbia

2013

High-resolution stable oxygen isotope analysis of the bivalve Saxidomus gigantea from shell midden sites was applied to identify seasonal patterns of resource procurement on the central coast of British Columbia, Canada. A total of 90 archaeological shells were examined from eight distinct sites spanning a 4500-year period. Combining micro-growth pattern analysis with high-resolution stable oxygen isotope sampling allows for a precise season of collection to be determined in estuarine bivalves recovered from archaeological sites. The results of the stable oxygen isotope analysis provide insights into seasonally structured harvest of S. gigantea (butter clam), which is associated with differ…

010506 paleontologyArcheology01 natural sciencesIsotopes of oxygenSclerochronologymedicine0601 history and archaeology14. Life underwaterComputingMilieux_MISCELLANEOUSShellfish0105 earth and related environmental sciencesgeographygeography.geographical_feature_category060102 archaeologybiologyEstuary06 humanities and the artsSeasonalitymedicine.diseasebiology.organism_classificationSaxidomus giganteaMiddenFisheryOceanography[SDE]Environmental SciencesPeriod (geology)GeologyJournal of Archaeological Science
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REFINING ESTIMATES FOR THE SEASON OF SHELLFISH COLLECTION ON THE PACIFIC NORTHWEST COAST: APPLYING HIGH-RESOLUTION STABLE OXYGEN ISOTOPE ANALYSIS AND…

2012

Stable oxygen isotopes from estuarine bivalve carbonate from Saxidomus gigantea were analysed combined with high-resolution sclerochronology from modern and archaeological shells from British Columbia, Canada, to determine the seasonality of shellfish collection from the archaeological site of Namu. The combination of high-resolution sclerochronology and a micro-milled sampling strategy for δ18O analysis permits a precise estimate of archaeological seasonality, because seasonal freshwater influxes and changes in temperature have dual effects on the δ18O value of the shell. Sclerochronological analysis identifies the timing and duration of growth that is temporally aligned to stable oxygen i…

010506 paleontologyArcheologyHistorygeographygeography.geographical_feature_category060102 archaeologybiologyδ18OEstuary06 humanities and the artsSeasonalitybiology.organism_classificationmedicine.disease01 natural sciencesSaxidomus giganteaIsotopes of oxygenOceanographySclerochronologymedicine0601 history and archaeology14. Life underwaterShellfishHoloceneGeology0105 earth and related environmental sciencesArchaeometry
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High-resolution sclerochronological analysis of the bivalve mollusk Saxidomus gigantea from Alaska and British Columbia: techniques for revealing env…

2009

Abstract The butter clam, Saxidomus gigantea , is one of the most commonly recovered bivalves from archaeological shell middens on the Pacific Coast of North America. This study presents the results of the sclerochronology of modern specimens of S. gigantea , collected monthly from Pender Island (British Columbia), and additional modern specimens from the Dundas Islands (BC) and Mink and Little Takli Islands (Alaska). The methods presented can be used as a template to interpret local environmental conditions and increase the precision of seasonality estimates in shellfish using sclerochronology and oxygen isotope analysis. This method can also identify, with a high degree of accuracy, the d…

010506 paleontologyArcheologygeographygeography.geographical_feature_categorybiologyGrowing seasonGiganteaEstuarySeasonality010502 geochemistry & geophysicsmedicine.diseasebiology.organism_classification01 natural sciencesArchaeologySaxidomus giganteaOceanographySclerochronology[SDE]Environmental SciencesPaleoecologymedicine14. Life underwaterComputingMilieux_MISCELLANEOUS0105 earth and related environmental sciencesIsotope analysisJournal of Archaeological Science
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Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans.

2010

Sponges (Porifera) are among the simplest living and the earliest branching metazoans. They hold a pivotal role for studying genome evolution of the entire metazoan branch, both as an outgroup to Eumetazoa and as the closest branching phylum to the common ancestor of all multicellular animals (Urmetazoa). In order to assess the transcription inventory of sponges, we sequenced expressed sequence tag libraries of two demosponge species, Suberites domuncula and Lubomirskia baicalensis, and systematically analyzed the assembled sponge transcripts against their homologs from complete proteomes of six well-characterized metazoans--Nematostella vectensis, Caenorhabditis elegans, Drosophila melanog…

0106 biological sciencesGenome evolutionanimal structuresMolecular Sequence Datacomparative genomicsBiologyLubomirskia baicalensis010603 evolutionary biology01 natural sciencesGenomeEvolution Molecular03 medical and health sciencesGeneticsAnimalsCiona intestinalisMolecular BiologyGeneEcology Evolution Behavior and SystematicsPhylogenyResearch Articles030304 developmental biologymetazoan evolution; comparative genomics; genome complexity; Suberites domuncula; Lubomirskia baicalensisComparative genomicsGeneticsExpressed Sequence Tags0303 health sciencesComparative Genomic HybridizationGenomegenome complexityBase SequenceSequence Homology Amino Acidmetazoan evolutionbiology.organism_classificationSuberites domunculaEumetazoaPoriferaSuberites domunculaGene Expression RegulationSuberitesSequence AlignmentSuberitesMolecular biology and evolution
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An evolutionary perspective on the role of mesencephalic astrocyte-derived neurotrophic factor (MANF): At the crossroads of poriferan innate immune a…

2017

The mesencephalic astrocyte-derived neurotrophic factor (MANF) belongs to a recently discovered family of neurotrophic factors. MANF can be secreted but is generally resident within the endoplasmic reticulum (ER) in neuronal and non-neuronal cells, where it is involved in the ER stress response with pro-survival effects. Here we report the discovery of the MANF homolog SDMANF in the sponge Suberites domuncula. The basal positioning of sponges (phylum Porifera) in the animal tree of life offers a unique vantage point on the early evolution of the metazoan-specific genetic toolkit and molecular pathways. Since sponges lack a conventional nervous system, SDMANF presents an enticing opportunity…

0301 basic medicineEvolutionBiophysicsApoptosisBiologyBiochemistrylcsh:Biochemistry03 medical and health sciencesNeurotrophic factorslcsh:QD415-436lcsh:QH301-705.5MANFInnate immunityInnate immune systemEndoplasmic reticulumbiology.organism_classificationTransport inhibitorCell biologyPoriferaSuberites domuncula030104 developmental biologylcsh:Biology (General)Unfolded protein responsebiology.proteinER stressNeurotrophinSuberitesResearch ArticleBiochemistry and Biophysics Reports
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Bio-Sintering/Bio-Fusion of Silica in Sponge Spicules

2012

The synthesis of siliceous spicules in both demosponges and hexactinellids is enzymatically driven via silicatein. This enzyme exists both intra-spicularly and in the extra-spicular space. It catalyzes the formation of bio-silica constituting the silica lamellae that are formed during the appositional (layer-by-layer) growth of the spicules. The extent of (bio-silica forming) activity of silicatein from the demosponge Suberites domuncula measured in vitro reflects the amount of bio-silica required for the formation of spicules in vivo. It is shown that during growth and maturation of the spicules in demosponges a bio-fusion process occurs that results in an intra-spicular sintering of the s…

0303 health sciencesFusionMaterials sciencePolycondensation reactionbiologyHexactinellid030302 biochemistry & molecular biologySinteringEuplectellaCondensed Matter Physicsbiology.organism_classificationSuberites domuncula03 medical and health sciencesDemospongeSponge spiculeBiophysicsGeneral Materials Science030304 developmental biologyAdvanced Engineering Materials
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Flashing light in sponges through their siliceous fiber network: A new strategy of “neuronal transmission” in animals

2012

Sponges (phylum Porifera) represent a successful animal taxon that evolved prior to the Ediacaran-Cambrian boundary (542 million years ago). They have developed an almost complete array of cell- and tissue-based interaction systems necessary for the establishment of a functional, multicellular body. However, a network of neurons, one cell/tissue-communication system is missing in sponges. This fact is puzzling and enigmatic, because these animals possess receptors known to be involved in the nervous system in evolutionary younger animal phyla. As an example, the metabotropic glutamate/GABA-like receptor has been identified and cloned by us. Recently, we have identified a novel light transmi…

0303 health sciencesMultidisciplinarybiologyHexactinellid030302 biochemistry & molecular biologyAnatomybiology.organism_classificationCell biologySuberites domuncula03 medical and health sciencesSpongeDemospongeSponge spiculeCryptochromeLuciferaseSignal transductionGeneral030304 developmental biologyChinese Science Bulletin
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Silicateins, silicatein interactors and cellular interplay in sponge skeletogenesis: formation of glass fiber-like spicules

2012

Biomineralization processes are characterized by controlled deposition of inorganic polymers/minerals mediated by functional groups linked to organic templates. One metazoan taxon, the siliceous sponges, has utilized these principles and even gained the ability to form these polymers/minerals by an enzymatic mechanism using silicateins. Silicateins are the dominant protein species present in the axial canal of the skeletal elements of the siliceous sponges, the spicules, where they form the axial filament. Silicateins also represent a major part of the organic components of the silica lamellae, which are cylindrically arranged around the axial canal. With the demosponge Suberites domuncula …

0303 health sciencesSpiculebiology02 engineering and technologyCell BiologyAnatomyFlagellum021001 nanoscience & nanotechnologybiology.organism_classificationBiochemistrySuberites domuncula03 medical and health sciencesSpongeSponge spiculeDemospongeBiophysics0210 nano-technologyMolecular Biology030304 developmental biologySclerocyteBiomineralizationFEBS Journal
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