Search results for "editing"

Dimēriskas dCas9-FokI sistēmas izveidošana efektīvai zīdītāju šūnu genoma rekombinēšanai

2015

CRISPR/Cas9 sistēma nodrošina robustu un plaši pielietojamu genoma rekombinēšanas tehnoloģiju, kas paver iespēju zinātniekiem precīzi manipulēt ar specifickiem genoma elementiem, ko izmantot gēnu funkciju pētījumos bioloģijā un slimību attīstībā. Darba mērķis bija izveidot un optimizēt dCas9-FokI sistēmu, kas nodrošinātu stabilu un specifisku genoma rekombinēšanu cilvēka šūnās. Mēs piedāvājam alternatīvu tehnoloģiju, kas ir balstīta uz RNS vadītu dCas9-FokI sistēmu un piedāvā ievērojamu genoma rekombinēšanas potenciālu ar samazinātu nespecifiskās šķelšanas (off-targeting) efektu. Iegūtie dati liecina, ka šī izveidotā sistēma var tikt efektīvi izmantota genoma rekombinēšanai zīdītāju šūnās. …

T Cells Expressing Receptor Recombination/Revision Machinery Are Detected in the Tumor Microenvironment and Expanded in Genomically Over-unstable Mod…

2021

AbstractTumors undergo dynamic immunoediting as part of a process that balances immunologic sensing of emerging neoantigens and evasion from immune responses. Tumor-infiltrating lymphocytes (TIL) comprise heterogeneous subsets of peripheral T cells characterized by diverse functional differentiation states and dependence on T-cell receptor (TCR) specificity gained through recombination events during their development. We hypothesized that within the tumor microenvironment (TME), an antigenic milieu and immunologic interface, tumor-infiltrating peripheral T cells could reexpress key elements of the TCR recombination machinery, namely, Rag1 and Rag2 recombinases and Tdt polymerase, as a poten…

Carteles de libros en España: orígenes barrocos (con un apunte decimonónico)

2018

ABSTRACT: This article involves the study of Spanish posters that advertise the sale of publications printed by bookseller-publishers and printers in the modern world. The array of posters identified and preserved is not extensive, due to their ephemeral nature. However, their utilization is confirmed in documentary sources, references to these posters in gazettes, erudite correspondence, or literary testimonies themselves. I will attempt to demonstrate the role of the poster in the diffusion of publicity for these editorial novelties by considering walls as a space for public communication, serving the purpose of promoting new publications. In this study I consider the Baroque antecedents …

A new triple fluorescence reporter system for discrimination of Apobec1 and Apobec3 C-to-U RNA editing activities and editing-dependent protein expre…

2021

AbstractThe human body is composed of many different cell types which communicate with each other. In particular, the brain consists of billions of neurons and non-neuronal cells which are interconnected and require tight and precise regulation of cellular processes. RNA editing is a cellular process that diversifies gene function by enzymatic deamination of cytidine or adenine. This can result in changes of protein structure and function. Altered RNA editing is becoming increasingly associated with all kind of disease, but most approaches use advanced sequencing technologies to analyze bulk material. However, it is also becoming progressively evident that changes in RNA editing have to be …

Tempo Induction from Music Recordings Using Ensemble Empirical Mode Decomposition Analysis

2011

Tempo and beat are among the most important features of Western music. Owing to the perceptual nature of tempo, its automatic analysis and extraction remains a difficult task for a large variety of music genres. Western music notation represents musical events using a hierarchical metrical structure distinguishing different time scales. This hierarchy is often modeled using three levels: the tatum, the tactus, and the measure. The tatum represents the shortest durational value in music that is not just an accidental phenomenon (Bilmes 1993). The tactus period is the most perceptually prominent period, and is the period at which most humans would tap their feet in time with the music (Lerdah…

Improving diagnostic accuracy of MDCT coronary angiography in patients with mild heart rhythm irregularities using ECG editing

2006

OBJECTIVE. The objective of our study was to compare diagnostic accuracy of MDCT coronary angiography in a population of patients with mild heart rhythm irregularities before and after editing the ECG. SUBJECTS AND METHODS. Thirty-eight patients who underwent MDCT coronary angiography and conventional coronary angiography were enrolled in the study. The inclusion criterion was the presence of mild heart rhythm irregularities (i.e., premature beats; atrial fibrillation; mistriggering; or low heart rate, defined as 40 beats per minute or less) during the scan. All patients underwent MDCT with the following parameters: 16 detectors; collimation, 0.75 mm; gantry rotation time, 375 msec; 120 kV;…

The role of cell interactions in the control of RNA synthesis.

1967

Nucleotide excision repair of abasic DNA lesions

2019

AbstractApurinic/apyrimidinic (AP) sites are a class of highly mutagenic and toxic DNA lesions arising in the genome from a number of exogenous and endogenous sources. Repair of AP lesions takes place predominantly by the base excision pathway (BER). However, among chemically heterogeneous AP lesions formed in DNA, some are resistant to the endonuclease APE1 and thus refractory to BER. Here, we employed two types of reporter constructs accommodating synthetic APE1-resistant AP lesions to investigate the auxiliary repair mechanisms in human cells. By combined analyses of recovery of the transcription rate and suppression of transcriptional mutagenesis at specifically positioned AP lesions, w…

Improvement of baculovirus as protein expression vector and as biopesticide by CRISPR/Cas9 editing

2019

The clustered regularly interspaced short palindromic repeats (CRISPR) system?associated Cas9 endonuclease is a molecular tool that enables specific sequence editing with high efficiency. In this study, we have explored the use of CRISPR/Cas9 system for the engineering of baculovirus. We have shown that the delivering of Cas9-single guide RNA ribonucleoprotein (RNP) complex with or without DNA repair template into Sf21 insect cells through lipofection might be efficient to produce knockouts as well as knock-ins into the baculovirus. To evaluate potential application of our CRISPR/Cas9 method to improve baculovirus as protein expression vector and as biopesticide, we attempted to knockout se…

A comparative analysis to study editing of small noncoding BC200- and Alu transcripts in brain of prion-inoculated rhesus monkeys (M. Mulatta).

2012

Small retroelements (short interspersed elements, abbreviated SINEs) are abundant in vertebrate genomes. Using RNA isolated from rhesus monkey cerebellum and buffy coat, reverse-transcription polymerase chain reaction (RT PCR) was applied to clone cDNA of BC200 and Alu RNAs. Transcripts containing Alu-SINE sequences may be subjected to extensive RNA editing by ADAR (adenosine deaminases that act on RNA) deamination. Abundance of Alu transcripts was determined with real-time RT PCR and was significantly higher than BC200 (brain cytoplasmic) in cerebellum. BC200 transcripts were absent from buffy coat cells. Availability of the rhesus genome sequence allowed the BC200 transcripts to be mapped…