Search results for "evolution"
showing 10 items of 11096 documents
High-Quality Genome Assembly and Annotation of the Big-Eye Mandarin Fish (Siniperca knerii)
2020
Abstract The big-eye mandarin fish (Siniperca knerii) is an endemic species of southern China. It belongs to the family Sinipercidae, which is closely related to the well-known North American sunfish family Centrarchidae. Determining the genome sequence of S. knerii would provide a foundation for better examining its genetic diversity and population history. A novel sequenced genome of the Sinipercidae also would help in comparative study of the Centrarchidae using Siniperca as a reference. Here, we determined the genome sequence of S. knerii using 10x Genomics technology and next-generation sequencing. Paired-end sequencing on a half lane of HiSeq X platform generated 56 Gbp of raw data. R…
Inconsistent relationships among protection, benthic assemblage, habitat complexity and fish biomass in Mediterranean temperate rocky reefs
2021
International audience; Marine Protected Areas (MPAs) have been proved to effectively protect and restore fish assemblages. There is mixed evidence regarding the effects of MPAs on benthic assemblages, habitat complexity, and how protection might mediate the effects of habitat features (including biotic and abiotic components) on fish assemblages, with very little information concerning temperate areas. Here, our aim is to assess how protection 1) influences benthic assemblages and habitat complexity, and 2) mediates the effects of habitat complexity on fishes.Using non-destructive methods (photosampling for shallow rocky benthic assemblages, and underwater visual census using strip transec…
Machine learning predictions of trophic status indicators and plankton dynamic in coastal lagoons
2018
Abstract Multivariate trophic indices provide an efficient way to assess and classify the eutrophication level and ecological status of a given water body, but their computation requires the availability of experimental information on many parameters, including biological data, that might not always be available. Here we show that machine learning techniques – once trained against a full data set – can be used to infer plankton biomass information from chemical and physical parameter only, so that trophic index can then be computed without using additional biological data. More specifically, we reconstruct plankton information from chemical and physical data, and this information together w…
Vertical sediment migrations of dominant midge species in subtropical lakes with implications for bioassessment
2018
Abstract Propsilocerus akamusi (Diptera: Chironomidae) is a dominant species in numerous eutrophic lakes and they could burrow into deep sediments (>30 cm) during summer months. However, common-used grab samplers are efficient in collecting surface-dwelling species (
Luonnon monimuotoisuus ja vihreä elvytys
2021
Suomi on toistaiseksi selvinnyt koronaviruksen (COVID-19) aiheuttamasta kriisistä taloudellisesti verrokkimaita paremmin, mutta työllisyystilanne on silti heikentynyt ympäri maata ja talouden ennustetaan supistuvan noin 4,7 prosenttia vuonna 20201. Negatiivisten talousvaikutusten minimoimiseksi hallitus on suuntaamassa EU:n elpymisvälineestä varoja käytettäväksi toimiin, jotka samanaikaisesti auttavat ratkaisemaan aikamme kahta merkittävää kriisiä: ilmastonmuutosta ja luontokatoa. Kyse on aidosti vakavista kriiseistä. Esimerkiksi Maailman talousfoorumi on listannut luonnon ekosysteemien romahduksen ja ilmastonmuutoksen torjunnan epäonnistumisen sekä vaikutuksiltaan että todennäköisyydeltään…
Incorporating Biotic Information in Species Distribution Models: A Coregionalized Approach
2021
In this work, we discuss the use of a methodological approach for modelling spatial relationships among species by means of a Bayesian spatial coregionalized model. Inference and prediction is performed using the integrated nested Laplace approximation methodology to reduce the computational burden. We illustrate the performance of the coregionalized model in species interaction scenarios using both simulated and real data. The simulation demonstrates the better predictive performance of the coregionalized model with respect to the univariate models. The case study focus on the spatial distribution of a prey species, the European anchovy (Engraulis encrasicolus), and one of its predator spe…
Tracking management-related water quality alterations by phytoplankton assemblages in a tropical reservoir
2015
Water quality improvement and suppression of cyanobacterial blooms were planned in a eutrophic reservoir in southern China through ecological engineering measures from 2006 to 2011. This consisted in (i) a hydraulic resetting of inflows and outflows to increase the distance between inlet and outlet and the water residence time in the reservoir, and in (ii) the installation of floating frames hosting wetland vegetation to promote an alteration in phytoplankton composition. The environmental changes were therefore followed through the analysis of biotic responses in phytoplankton assemblages. Ecological engineering was effective in reducing phytoplankton total biomass, in re-establishing more…
Distance decay 2.0 – a global synthesis of taxonomic and functional turnover in ecological communities
2021
AbstractUnderstanding the variation in community composition and species abundances, i.e., β-diversity, is at the heart of community ecology. A common approach to examine β-diversity is to evaluate directional turnover in community composition by measuring the decay in the similarity among pairs of communities along spatial or environmental distances. We provide the first global synthesis of taxonomic and functional distance decay along spatial and environmental distance by analysing 149 datasets comprising different types of organisms and environments. We modelled an exponential distance decay for each dataset using generalized linear models and extracted r2 and slope to analyse the streng…
Analysis of plant diversity with retrotransposon-based molecular markers
2010
Retrotransposons are both major generators of genetic diversity and tools for detecting the genomic changes associated with their activity because they create large and stable insertions in the genome. After the demonstration that retrotransposons are ubiquitous, active and abundant in plant genomes, various marker systems were developed to exploit polymorphisms in retrotransposon insertion patterns. These have found applications ranging from the mapping of genes responsible for particular traits and the management of backcrossing programs to analysis of population structure and diversity of wild species. This review provides an insight into the spectrum of retrotransposon-based marker syst…
Overcompensation as a mechanism for maintaining polymorphism: egg-to-adult viability in Drosophila.
1990
Frequency-dependent selection may be accounted for, in ecological terms, by the differential effectiveness of alternative genotypes in exploiting limiting environmental resources. Differentiation in resource exploitation among genotypes implies in turn that a mix of genotypes may exploit more fully the resources than a genetically uniform population, a phenomenon called 'overcompensation' Experiments designed to test for overcompensation whow that highly polymorphic populations can support larger numbers of individuals per food unit than less polymorphic populations. This difference cannot be attributed to the level of individual heterozygosity, which is the same in both types of population…