Search results for "false discovery rate"

Plaid model for microarray data: an enhancement of the pruning step

2010

Microarrays have become a standard tool for studying gene functions. For example, we can investigate if a subset of genes shows a coherent expression pattern under different conditions. The plaid model, a model-based biclustering method, can be used to incorporate the addiction structure used for the microarray experiment. In this paper we describe an enhancement for the plaid model algorithm based on the theory of the false discovery rate.

Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis

2013

To access publisher's full text version of this article click on the hyperlink at the bottom of the page Primary sclerosing cholangitis (PSC) is a severe liver disease of unknown etiology leading to fibrotic destruction of the bile ducts and ultimately to the need for liver transplantation. We compared 3,789 PSC cases of European ancestry to 25,079 population controls across 130,422 SNPs genotyped using the Immunochip. We identified 12 genome-wide significant associations outside the human leukocyte antigen (HLA) complex, 9 of which were new, increasing the number of known PSC risk loci to 16. Despite comorbidity with inflammatory bowel disease (IBD) in 72% of the cases, 6 of the 12 loci sh…

Lipidomic profiling identifies signatures of metabolic risk

2020

Background: Metabolic syndrome (MetS), the clustering of metabolic risk factors, is associated with cardiovascular disease risk. We sought to determine if dysregulation of the lipidome may contribute to metabolic risk factors. Methods: We measured 154 circulating lipid species in 658 participants from the Framingham Heart Study (FHS) using liquid chromatography-tandem mass spectrometry and tested for associations with obesity, dysglycemia, and dyslipidemia. Independent external validation was sought in three independent cohorts. Follow-up data from the FHS were used to test for lipid metabolites associated with longitudinal changes in metabolic risk factors. Results: Thirty-nine lipids were…

S36.4: Control of false discovery rate in adaptive designs

2004

Personality predicts social dominance in female zebra finches, Taeniopygia guttata, in a feeding context.

2011

6 pages; International audience; Although personality has been defined as a suite of correlated behaviours, most studies of animal personality actually consider correlations between a few traits. We examined the repeatability and correlational structure of five potential personality traits (activity, neophobia, exploratory tendencies, risk-taking behaviour and obstinacy), in female zebra finches. In addition, we assessed to what extent personality influenced social dominance in a feeding context in this gregarious species. All personality traits were found to be highly repeatable within individuals. In addition, except for obstinacy, all of them were related to each other, thus defining a b…