Search results for "genetiikka"

Genome‐phenotype‐environment associations identify signatures of selection in a panmictic population of threespine stickleback

2023

Adaptive genetic divergence occurs when selection imposed by the environment causes the genomic component of the phenotype to differentiate. However, genomic signatures of natural selection are usually identified without information on which trait is responding to selection by which selective agent(s). Here we integrate whole-genome-sequencing with phenomics and measures of putative selective agents to assess the extent of adaptive divergence in threespine stickleback occupying the highly heterogeneous lake Mývatn, NE Iceland. We find negligible genome wide divergence, yet multiple traits (body size, gill raker structure and defence traits) were divergent along known ecological gradients (t…

Traits and phylogenies modulate the environmental responses of wood-inhabiting fungal communities across spatial scales

2022

Identifying the spatial scales at which community assembly processes operate is fundamental for gaining a mechanistic understanding of the drivers shaping ecological communities. In this study, we examined whether and how traits and phylogenetic relationships structure fungal community assembly across spatial scales. We applied joint species distribution modelling to a European-scale dataset on 215 wood-inhabiting fungal species, which includes data on traits, phylogeny and environmental variables measured at the local (log-level) and regional (site-level) scales. At the local scale, wood-inhabiting fungal communities were mostly structured by deadwood decay stage, and the trait and phyloge…

Genetic and environmental effects on body mass index during adolescence: a prospective study among Finnish twins

2009

Objective: To study genetic and environmental factors affecting body mass index (BMI) and BMI phenotypic correlations across adolescence. Design: Prospective, population-based, twin cohort study. Participants and methods: We used twin modeling in 2413 monozygotic and same-sex and opposite-sex dizygotic Finnish twin pairs born in 1983–1987 and assessed using self-report questionnaires at 11–12, 14 and 17 years of age. Results: Heritability of BMI was estimated to be 0.58–0.69 among 11–12- and 14-year-old boys and girls, 0.83 among 17-year-old boys and 0.74 among 17-year-old girls. Common environmental effects shared by siblings were 0.15–0.24 among 11–12- and 14-year-old boys and girls but n…

Interactions and patterns between species diversity and genetic diversity

2015

Evolution of anticipatory effects mediated by epigenetic changes.

2022

Abstract Anticipatory effects mediated by epigenetic changes occur when parents modify the phenotype of their offspring by making epigenetic changes in their gametes guided by information from an environmental cue. To investigate when do anticipatory effects mediated by epigenetic changes evolve in a fluctuating environment, I use an individual based simulation model with explicit genetic architecture. The model allows for the population to respond to environmental changes by evolving within generation plasticity, bet-hedging, or track the environment with genetic adaptation, in addition to the evolution of anticipatory effects. The results show that anticipatory effects evolve when the env…

Cost of reproduction in a seed beetle : a quantitative genetic perspective

2006

Lisääntymisestä on kustannuksia, jotka ilmenevät lyhentyneenä elinikänä. Elinikä ja lisääntymisestä aiheutuvat kustannukset ovat geenien määräämiä.- Väitöskirjatyössäni tutkin lisääntymisen kustannuksia koirailla. Tutkimuskohteena käytin Callosobruchus maculatus - jyväkuoriaisia, jotka ovat trooppisia papujen tuholaisia. Kyseinen laji on paljon käytetty evoluutioekologian alan mallilaji. Naarailla on tehty runsaasti lisääntymisen kustannustutkimuksia, mutta koirailla vain muutamia tutkimuksia. Perinteisesti on ajateltu, että koiras panostaa lisääntymiseen lähinnä parittelemalla ja luovuttamalla sukusoluissaan geenejään jälkeläisilleen, Satu Paukku kertoo.Tutkimuksissa ilmeni, että koiraille…

Does Arsenic Contamination Affect DNA Methylation Patterns in a Wild Bird Population? : An Experimental Approach

2021

Pollutants, such as toxic metals, negatively influence organismal health and performance, even leading to population collapses. Studies in model organisms have shown that epigenetic marks, such as DNA methylation, can be modulated by various environmental factors, including pollutants, influencing gene expression, and various organismal traits. Yet experimental data on the effects of pollution on DNA methylation from wild animal populations are largely lacking. We here experimentally investigated for the first time the effects of early-life exposure to environmentally relevant levels of a key pollutant, arsenic (As), on genome-wide DNA methylation in a wild bird population. We experimentall…

Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa

2023

While mutation rates have been extensively studied, variation in mutation rates throughout the genome is poorly understood. To understand patterns of genetic variation, it is important to understand how mutation rates vary. Chromatin modifications may be an important factor in determining variation in mutation rates in eukaryotic genomes. To study variation in mutation rates, we performed a mutation accumulation experiment in the filamentous fungus Neurospora crassa, and sequenced the genomes of the 40 MA lines that had been propagated asexually for approximately 1015 [1003, 1026] mitoses. We detected 1322 mutations in total, and observed that the mutation rate was higher in regions of low …

Epigenetic mechanisms behind phenotypic changes in different population densities in bank voles (Myodes glareolus)

2017

Metsämyyrän (Myodes glareolus) fenotyyppisten muutosten epigeneettiset mekanismit eri populaatiotiheyksissä. Epigeneettisilla mekanismeilla on perustava rooli normaalissa geeniekspression aktiivisuudessa ja ne voidaan nähdä molekulaaristen prosessien systeeminä, joka reagoi ympäristötekijöihin ja säätelee geenisäätelyä muuttamatta alkuperäistä DNA-sekvenssiä. DNA-metylaatio on eniten tutkittu epigeneettinen mekanismi jolla on tärkeä rooli geenien säätelyssä normaalin solujen kehityksen aikana. Metylaatio ilmenee tyypillisesti CpG-dinukleotideissa, joissa metyyliryhmä kiinnittyy 5’-sytosiiniin (C) jota seuraava emäs on guaniini (G). Tämä voi estää näihin CpG-paikkoihin liittyvien geenien ilm…

Genetic diversity in the wild : cyclic population dynamics and population isolation

2013