Search results for "germplasm"
showing 10 items of 98 documents
Microsatellite marker-based genetic variability in Spanish rice cultivars and landraces
2010
The genetic relationships among japonica rice cultivars and landraces were studied. Most of them are of Spanish origin, and were developed and cultivated for varying time periods over more than a century. To uncover genetic diversity within each cultivar, we analysed 30 plants per cultivar or accession using 10 fluorescently labelled primer pairs for SSR markers. Six cultivars were included in the study, with accessions from four different regions of Spain of the traditional cultivar Bomba. A total of 37 alleles were detected with a mean of 3.7 alleles per locus. Polymorphism information content (PIC) ranged from 0 to 0.78 with an average of 0.51 per locus. Genetic diversity for cvs. Albufe…
Evaluation of morphological and genetic diversity of loquat accessions grown in sicily
2015
In this study 20 accessions of loquat (Eriobotrya japonica Lindl.) that originated from Sicily and other countries were characterized phenotypically and genotyped using seven microsatellite markers. The microsatellites clearly distinguished 14 accessions; three pairs of local accessions were not differentiated, and three accessions from abroad can be considered bud sport mutations of the main Spanish cultivar âAlgerieâ. The mean alleles per locus was four, ranging from two with the marker EJ075 and five with EJ012 and EJ271; the mean Polymorphic Information Content was 0.53; the average expected and observed heterozygosities resulted 0.62 and 0.59, respectively. These values revealed a …
Genetic diversity of early ripening breba accessions (Ficus caricaL.) found in the “Pomona” Apulian collection
2017
In order to study fig (Ficus carica L.) biodiversity in Southern Italy, a study was performed in a private Apulian collection, "I Giardini di Pomona", in which 350 different native and international cultivars were recovered in the last 15 years. This collection is located in middle part of Apulia region inside an area of great charm called "Valle D'Itria". In the region, fig is an important edible fruit tree species and it has been used for fresh fruit production, for centuries. Moreover, fig is considered as an important element of natural landscape and as significant cultural heritage. In this study, the Apulian breba cultivars, characterized by interesting agronomic traits, such as early…
Genetic diversity of Dioscorea dumetorum (Kunth) Pax using Amplified Fragment Length Polymorphisms (AFLP) and cpDNA
2010
We have utilized Amplified Fragment Length Polymorphisms (AFLP) in conjunction with chloroplast DNA (cpDNA) sequence data to study the genetic diversity in 53 accessions of Dioscorea dumetorum from six countries in West and Central Africa. Our results provide a comparison of the two marker systems with regards to their applicability to differentiate intraspecific genotypes and the grouping of the accessions based on localities of collection. A total of 1052 AFLP fragments (of which 94.1% were polymorphic) produced from twelve primer combinations indicate a relatively high level of polymorphism among the accessions. Three major genetic groups that do not strictly follow a geographic distribu…
SSR-based DNA fingerprints reveal the genetic diversity of Sicilian olive (Olea europaeaL.) germplasm
2005
Twelve published simple sequence repeat (SSR; microsatellite) markers, belonging to the ssrOeUA-DCA, GAPU and UDO series, were tested in a panel of 46 accessions of olive germplasm belonging to 30 unique cultivars collected in seven Provinces of Sicily. Four well-known reference olive cultivars were also added. The analysis was carried out on an automatic capillary sequencer using fluorescent dyes, and fragment sizes were determined using internal standards. The results allowed us to rank the SSRs assayed according to their information content and reproducibility. Up to 115 alleles were identified (119, if those unique to sport mutations were included), the frequency of which allowed geneti…
Analysis of S-allele genetic diversity in Sicilian almond germplasm comparing different molecular methods
2015
Italian almond germplasm is characterized by a wide diversity in several growing areas among which Sicily is one of the most important. Analysis with consensus and specific primers and DNA sequencing was performed to investigate S-RNase genetic diversity and to elucidate the homology rate within a genetic pool of 27 Italian accessions. Interestingly, some of the self-compatible cultivars did not show the presence of Sf allele. Amplicons from consensus and allele-specific PCR primers revealed a high level of variability. Sequencing of all the S-RNase amplicons derived from consensus primers allowed the identification of two new S-RNase alleles (S51 and S52). Surprisingly, despite the AA repl…
An initial study into the suitability of Sicilian ecotypes of Cynodon dactylon (L.) Pers. for turfgrass use
2004
The aim of the study is to evaluate the biodiversity of Cynodon dactylon (L.) Pers. in Sicily (Italy), observing several ecotypes collected in specific areas of the island. The ultimate goal was to identify ecotypes that have the qualitative standards required to establish turfgrasses and/or for specific plant breeding programmes. For each of the 22 bermudagrass ecotypes that were collected from Sicily, leaf texture, stolon internodes length, stolon diameter, turf colour, uniformity and quality rating were the main biometric and qualitative parameters monitored. The speed of recovery was also determined for each ecotype. Interesting variability was recorded in the collected vegetative mater…
Molecular and morphological diversity of on-farm hazelnut (Corylus avellana L.) landraces from southern Europe and their role in the origin and diffu…
2013
Hazelnut (Corylus avellana L.) is a traditional nut crop in southern Europe. Germplasm exploration conducted on-farm in five countries (Portugal, Spain, Italy, Slovenia, and Greece) identified 77 landraces. The present work describes phenotypic variation in nut and husk traits and investigates genetic relationships using ten simple sequence repeat (SSR) markers among these landraces, 57 well-known references cultivars, and 19 wild accessions. Among the 77 landraces, 42 had unique fingerprints while 35 showed a SSR profile identical to a known cultivar. Among the 42 unique landraces, morphological observations revealed high phenotypic diversity, and some had characteristics appreciated by th…
Morpho-physiological and adaptive variation of Italian germplasm of sulla (Hedysarum coronarium L.)
2014
Sulla is a biennial forage legume native to the central-western Mediterranean Basin and has increasing interest for regions with Mediterranean-climate. The Italian germplasm is a reservoir of variation for important agronomic traits. This study aimed to support breeding programs by investigating patterns of agronomic, adaptive and morpho-physiological variation among ecotypes collected from the three main Italian regions of species cultivation: central Italy, and the two islands of Sicily and Sardinia. Forage yield and morpho-physiological traits were evaluated at a site with Mediterranean climate in Sicily. Forage yield and cold tolerance in a cold-prone site of northern Italy were also as…
Centennial olive trees as a reservoir of genetic diversity
2011
†Background and Aims Genetic characterization and phylogenetic analysis of the oldest trees could be a powerful tool both for germplasm collection and for understanding the earliest origins of clonally propagated fruit crops. The olive tree (Olea europaea L.) is a suitable model to study the origin of cultivars due to its long lifespan, resulting in the existence of both centennial and millennial trees across the Mediterranean Basin. †Methods The genetic identity and diversity as well as the phylogenetic relationships among the oldest wild and cultivated olives of southern Spain were evaluated by analysing simple sequence repeat markers. Samples from both the canopy and the roots of each tr…