Search results for "iTED"
showing 10 items of 2408 documents
Effect of opsin on the shape of the potential energy surfaces at the conical intersection of the Rhodopsin chromophore
2008
Abstract In order to disentangle the role of the protein in the control of the photoisomerization of the chromophore of the visual pigment Rhodopsin, we compare the structure of the ground and excited potential energy surfaces of gas-phase and opsin-embedded 11- cis retinal chromophore at the corresponding (lowest energy) conical intersections. It is shown that, along the branching plane, the asymmetric opsin environment destabilizes one of the ground state relaxation channels emerging from the conical intersection. This suggests that opsin promotes the formation of the product (bathorhodopsin) via enhanced decay probability along the all- trans exit channel. In contrast, in the gas-phase n…
Molecular Basis of DNA Photodimerization: Intrinsic Production of Cyclobutane Cytosine Dimers
2008
Based on CASPT2 results, the present contribution establishes for the first time that cytosine photodimer formation (CC) is mediated along the triplet and singlet manifold by a singlet-triplet crossing, (T1/S0)X, and by a conical intersection, (S1/S0)CI, respectively. The former can be accessed in a barrierless way from a great variety of photochemical avenues and exhibits a covalent single bond between the ethene C6-C6' carbon atoms of each monomer. The efficiency of the stepwise triplet mechanism, however, would be modulated by the effectiveness of the intersystem crossing mechanism. The results provide the grounds for the understanding of the potential photogenotoxicity of endogenous and…
Quantitative evaluation of the preferential orientation ofpara-phenylene vinylene pentamers in polystyrene films by optically detected magnetic reson…
2007
The morphology of drop-casted and spin-coated films of blends ofpara-phenylene vinylenederived pentamers with polystyrene is investigated by means of X-band optically detected magnetic resonance (ODMR) of the triplet excited states. Adapting an electron spin resonance simulation program to ODMR, the orientation distribution function of the oligomers in the films could be quantified. After drop casting or spin coating the pentamers from a solution, the oligomers tend to lie with their backbones in the plane of the film. The parameters of film preparation and the type of pentamer strongly influence the orientation distribution function. Also, the study of preferentially oriented films allows …
The Transoid, Ortho, and Gauche Conformers of Decamethyl-n-tetrasilane, n-Si4Me10: Electronic Transitions in the Multistate Complete Active Space Se…
2003
Multistate complete active space second-order perturbation theory (MS-CASPT2) is used to improve earlier descriptions of the low-energy valence excited states of the transoid, ortho, and gauche conformers of decamethyl-n-tetrasilane, n-Si4Me10, using a generally contracted basis set of atomic natural orbitals (ANOs) at a ground-state geometry optimized in the second-order Moller−Plesset perturbation theory (MP2) approximation with Dunning's correlation consistent triple-ζ basis set (cc-pVTZ) on the silicon atoms and the 6-31G* and 6-31G basis sets on the carbon and hydrogen atoms, respectively. Relative energies, relative free energies, and mole fractions of the transoid, ortho, and gauche …
Singlet-Triplet States Interaction Regions in DNA/RNA Nucleobase Hypersurfaces.
2010
The present study provides new insight into the intrinsic mechanisms for the population of the triplet manifold in DNA nucleobases by determining, at the multiconfigurational CASSCF/CASPT2 level, the singlet-triplet states crossing regions and the main decay paths for their lowest singlet and triplet states after near-UV irradiation. The studied singlet-triplet interacting regions are accessible along the minimum energy path of the initially populated singlet bright (1)ππ* state. In particular, all five natural DNA/RNA nucleobases have, at the end of the main minimum energy path and near a conical intersection of the ground and (1)ππ* states, a low-energy, easily accessible, singlet-triplet…
Photostability and Photoreactivity in Biomolecules: Quantum Chemistry of Nucleic Acid Base Monomers and Dimers
2008
The great potentials of high-level ab initio methods, in particular, the CASPT2//CASSCF protocol, are fully illustrated through: (i) the study of ultrafast energy relaxation in DNA/RNA base monomers, (ii) the intrinsic population mechanism of the lowest triplet state, and (iii) how bioexcimers can be considered as precursors of charge transfer and photoinduced reactivity. In order to describe these processes properly, the presence of conical intersections (CIs) and the topology of the involved pathways have to be determined correctly. Thus, in theoretical calculations the dynamic electronic correlation has to be considered. The accessibility of the CIs (or the seam of CIs) becomes crucial t…
The Modelling of Cell Membrane Electrodynamics
2013
Main electrical processes in cells are defined by membranes. The membrane maintains a biochemical environment inside the cell that differs from the outside one, keeping the electrical potential negative inside the cell and organizing the selective transport across the surface. In the paper, it is attempted to explain the cell membrane electrodynamics using modelling experiments with magnetic dipoles. It is shown that the membrane has a definite symmetry or handenness. In addition, a characteristic mechanism of the excited state physics is given. The modelling experiments have also shown that a membrane with different symmetry can exist. Since the electrical processes in these cases are diff…
Continuous-wave mirrorless lasing at 221 μm in sodium vapors
2018
We demonstrate backward-directed continuous-wave (cw) emission at 2.21 {\mu}m generated on the 4P3/2-4S1/2 population-inverted transition in Na vapors two-photon excited with resonant laser light at 589 and 569 nm. Our study of power and atom-number-density threshold characteristics shows that lasing occurs at sub-10 mW total power of the applied laser light. The observed 6 mrad divergence is defined mainly by the aspect ratio of the gain region. We find that mirrorless lasing at 2.21 {\mu}m is magnetic field and polarization dependent that may be useful for remote magnetometry. The presented results could help determine the requirements for obtaining directional return from sodium atoms in…
Progress and Challenges in the Calculation of Electronic Excited States
2011
A detailed understanding of the properties of electronic excited states and the reaction mechanisms that molecules undergo after light irradiation is a fundamental ingredient for following light-driven natural processes and for designing novel photonic materials. The aim of this review is to present an overview of the ab initio quantum chemical and time-dependent density functional theory methods that can be used to model spectroscopy and photochemistry in molecular systems. The applicability and limitations of the different methods as well as the main frontiers are discussed. To illustrate the progress achieved by excited-state chemistry in the recent years as well as the main challenges f…
Photosensitization and phototherapy with furocoumarins: A quantum-chemical study
2008
Abstract The effect of electromagnetic radiation on biological objects extends from heating to complex photochemistry, and includes DNA alteration, that properly modified in damaged cells may entail beneficial effects. In this regard, psoralen + UV-A (PUVA) therapy, in which furocoumarins, psoralen-like chromophores, are used as photosensitizers and photoreactants with DNA bases, is one of the most promising strategies against a plethora of diseases. Understanding the underlying photochemical mechanisms is crucial to design effective drugs without undesired side effects. We have undertaken a quantum-mechanical study on the photophysics and photochemistry of furocoumarins, analyzing firstly …