Search results for "imide"

showing 10 items of 298 documents

A Fluorine Scan at the Catalytic Center of Thrombin: CF, COH, and COMe Bioisosterism and Fluorine Effects on pKa and logD Values

2006

A series of 16 tricyclic thrombin inhibitors was prepared by using the 1,3-dipolar cycloaddition of azomethine ylides derived from 3- or 4-hydroxyproline and 4-bromobenzaldehyde, with N-(4-fluorobenzyl)maleimide as the key step. The terminal pyrrolidine ring of the inhibitors was systematically substituted to explore the potential bioisosteric behavior of C-F, C-OH, and C-OMe residues pointing into the environment of the catalytic center of a serine protease. X-ray crystal structure analyses revealed a distinct puckering preference of this ring. Substitution by F, HO, and MeO has a strong effect on the basicity of the adjacent pyrrolidine nitrogen center which originates from two sigma-indu…

Models MolecularMagnetic Resonance SpectroscopyTertiary amineStereochemistrychemistry.chemical_elementCrystal structureBiochemistryPyrrolidinechemistry.chemical_compoundCatalytic DomainDrug DiscoveryNon-covalent interactionsGeneral Pharmacology Toxicology and PharmaceuticsMaleimidePharmacologychemistry.chemical_classificationMolecular StructureOrganic ChemistryThrombinFluorineAcceptorCycloadditionchemistrySpectrometry Mass Matrix-Assisted Laser Desorption-IonizationFluorineMolecular MedicineChemMedChem
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Impact of local compressive stress on the optical transitions of single organic dye molecules

2012

The ability to mechanically control the optical properties of individual molecules is a grand challenge in nanoscience and could enable the manipulation of chemical reactivity at the single-molecule level. In the past, light has been used to alter the emission wavelength of individual molecules or modulate the energy transfer quantum yield between them. Furthermore, tensile stress has been applied to study the force dependence of protein folding/unfolding and of the chemistry and photochemistry of single molecules, although in these mechanical experiments the strength of the weakest bond limits the amount of applicable force. Here, we show that compressive stress modifies the photophysical …

Models MolecularMaterials scienceBiomedical EngineeringBioengineeringNanotechnologyImidesMicroscopy Atomic ForceMolecular physicslaw.inventionAdsorptionConfocal microscopylawMoleculeGeneral Materials ScienceEmission spectrumPhysics::Chemical PhysicsElectrical and Electronic EngineeringColoring AgentsPeryleneAtomic force microscopyEquipment DesignCondensed Matter PhysicsAtomic and Molecular Physics and OpticsCompressive strengthEnergy TransferMicroscopy FluorescenceOrganic dyeStress MechanicalNature Nanotechnology
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Modification of Nanocrystalline WO3 with a Dicationic Perylene Bisimide: Applications to Molecular Level Solar Water Splitting

2015

[(N,N?-Bis(2-(trimethylammonium)ethylene) perylene 3,4,9,10-tetracarboxylic acid bisimide)(PF6)2] (1) was observed to spontaneously adsorb on nanocrystalline WO3 surfaces via aggregation/hydrophobic forces. Under visible irradiation (? > 435 nm), the excited state of 1 underwent oxidative quenching by electron injection (kinj > 108 s-1) to WO3, leaving a strongly positive hole (Eox ? 1.7 V vs SCE), which allows to drive demanding photo-oxidation reactions in photoelectrochemical cells (PECs). The casting of IrO2 nanoparticles (NPs), acting as water oxidation catalysts (WOCs) on the sensitized electrodes, led to a 4-fold enhancement in photoanodic current, consistent with hole transfer from …

Models MolecularMolecular ConformationNanoparticleImidesPhotochemistryBiochemistryTungstenCatalysisNOCatalysiElectron Transportchemistry.chemical_compoundColloid and Surface ChemistryTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYWO3ComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATIONperylenePhotoelectrochemical cellIrO2Quenching (fluorescence)Chemistry (all)charge transferWaterOxidesGeneral ChemistryPhotoelectrochemical cellPhotochemical ProcessesSolar fuelChemistry (all); Catalysis; Biochemistry; Colloid and Surface ChemistryNanocrystalline materialperylene WO3 charge transfer IrO2MicrosecondchemistryWater SplittingSunlightVISIBLE-LIGHT; ARTIFICIAL PHOTOSYNTHESIS; PHOTOELECTROCHEMICAL CELL; OXIDATION CATALYSTS; ELECTRON-TRANSFER; FABRICATIONNanoparticlesPerylene bisimideWater splittingPeryleneMathematicsofComputing_DISCRETEMATHEMATICS
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Positional Isomers of Chromophore–Peptide Conjugates Self-Assemble into Different Morphologies

2018

Ordering π-systems into defined supramolecular structures is important for the development of organic functional materials. In recent years, peptides with defined secondary structures and/or self-assembly properties were introduced as powerful tools to order peptide-chromophore conjugates into different morphologies. This work explores whether or not the directionality of peptides can be used to control the self-assembly. The position of the π-system in conjugates between oligoprolines and perylene monoimide (PMI) chromophores was varied by attaching the PMI moiety to the second-to-last residue from the C- and N-termini, respectively. Microscopic and diffraction analysis revealed that the p…

Models MolecularNanostructurenanostructurepi interactionProtein ConformationNanofibersSupramolecular chemistry02 engineering and technologyImides010402 general chemistry01 natural sciencesCatalysissupramolecular chemistrychemistry.chemical_compoundIsomerismStructural isomerMoietyDirectionalityImidePeryleneChemistryOrganic ChemistryStereoisomerismGeneral Chemistryself-assemblyNanofiberChromophore021001 nanoscience & nanotechnology0104 chemical sciencesCrystallographyPeptideSelf-assemblyPeptides0210 nano-technologyPerylene
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Topology and accessibility of the transmembrane helices and the sensory site in the bifunctional transporter DcuB of Escherichia coli.

2011

C(4)-Dicarboxylate uptake transporter B (DcuB) of Escherichia coli is a bifunctional transporter that catalyzes fumarate/succinate antiport and serves as a cosensor of the sensor kinase DcuS. Sites and domains of DcuB were analyzed for their topology relative to the cytoplasmic or periplasmic side of the membrane and their accessibility to the water space. For the topology studies, DcuB was fused at 33 sites to the reporter enzymes PhoA and LacZ that are only active when located in the periplasm or the cytoplasm, respectively. The ratios of the PhoA and LacZ activities suggested the presence of 10 or 11 hydrophilic loops, and 11 or 12 α-helical transmembrane domains (TMDs). The central part…

Models MolecularRecombinant Fusion ProteinsMolecular Sequence Datalac operonTopologyBiochemistryProtein Structure SecondaryPolyethylene GlycolsProtein structureBacterial ProteinsCatalytic DomainStilbenesAmino Acid SequenceCysteineBinding sitePeptide sequenceDicarboxylic Acid TransportersEscherichia coli K12ChemistryEscherichia coli ProteinsCell MembranePeriplasmic spaceAlkaline PhosphataseTransmembrane domainMembrane proteinBiochemistryLac OperonEthylmaleimideSulfonic AcidsHydrophobic and Hydrophilic InteractionsCysteineBiochemistry
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Quantum Chemical Parametrization and Spectroscopic Characterization of the Frenkel Exciton Hamiltonian for a J-Aggregate Forming Perylene Bisimide Dye

2012

Quantum chemical and quantum dynamical calculations are performed for a bay-substituted perylene bisimide dye up to its hexameric aggregate. The aggregate structure is determined by employing the self-consistent charge density functional tight-binding (SCC-DFTB) approach including dispersion corrections. It is characterized by a stabilization via two chains of hydrogen bonds facilitated by amide functionalities. Focusing on the central embedded dimer, the Coulomb coupling for this J-aggregate is determined by means of the time-dependent density functional theory (TDDFT) to be -514 cm(-1). Exciton vibrational coupling is treated within the shifted oscillator model from which five strongly co…

Molecular StructureAbsorption spectroscopyChemistryExcitonCharge densityTime-dependent density functional theoryImideschemistry.chemical_compoundQuantum TheoryDensity functional theoryPhysical and Theoretical ChemistryAtomic physicsRotational–vibrational couplingPeryleneJ-aggregatePeryleneFluorescent DyesThe Journal of Physical Chemistry A
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Calix[4]arene-functionalized naphthalene and perylene imide dyes.

2002

[reaction: see text] Calix[4]arenes bearing one, two, or four 1,8-naphthyl imide groups at the wide rim and bis-calix[4]arenes connected via perylene-bisimide dye spacers have been synthesized. The low-temperature NMR spectrum of the tetranaphthylimide suggests, in agreement with a crystal structure, a C2-symmetrical pinched cone conformation stabilized via face-to-face pi-pi interactions between opposite naphthylimide groups. UV-vis and fluorescence studies have been carried out for the perylene bis-calix[4]arene dyes.

Molecular StructureChemistryOrganic ChemistryCrystal structureNuclear magnetic resonance spectroscopyNaphthalenesPhotochemistryImidesBiochemistryFluorescencechemistry.chemical_compoundPhenolsPolymer chemistryCalixareneMoleculePhysical and Theoretical ChemistryCalixarenesImideColoring AgentsPerylenePeryleneNaphthaleneFluorescent DyesOrganic letters
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Phosphatidylcholine covalently linked to a methacrylate-based monolith as a biomimetic stationary phase for capillary liquid chromatography

2015

Abstract In this study a strategy to immobilize phospholipids onto a polymer-based stationary phase is described. Methacrylate-based monoliths in capillary format (150 × 0.1 mm) were modified by soybean phosphatidylcholine through 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide coupling to obtain stationary phases suitable to mimic cell surface membranes. The covalent coupling reaction involves the phosphate group in phospholipids; therefore, the described methodology is suitable for all types of phospholipids. Immobilization of soy bean phosphatidylcholine on the monolith was confirmed by attenuated total reflectance Fourier transform infrared spectroscopy and gas chromatography-mass spectro…

Monolithic HPLC columnPolymersPhospholipid010402 general chemistryMethacrylate01 natural sciencesBiochemistryChemistry Techniques AnalyticalAnalytical ChemistryHydrophobic effectchemistry.chemical_compoundBiomimeticsEthyldimethylaminopropyl CarbodiimidePhosphatidylcholineMonolithFourier transform infrared spectroscopyPhospholipidsgeographygeography.geographical_feature_categoryChromatography010401 analytical chemistryOrganic ChemistryWaterGeneral Medicine0104 chemical sciencesMembranechemistryPhosphatidylcholinesMethacrylatesHydrophobic and Hydrophilic InteractionsChromatography LiquidJournal of Chromatography A
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Further link between complement activation and blood coagulation

1977

EVIDENCE for interactions between the complement and haemostatic systems has come from two lines of research—blood platelets have been shown to interact with various complement components1–6, and more ambiguous results have been obtained with respect to the role of complement in endotoxin shock and the Shwartzman reaction7–13. We report here that the activated complement component C3b triggers a marked increase of tissue thromboplastin (factor III) activity in cultured human monocytes. Differential counting and nonspecific esterase staining14 of the final preparations regularly revealed more than 85% monocytes.

MultidisciplinaryChemistryComplement C3MonocytesThromboplastinComplement (complexity)Endotoxin shockComplement systemTissue factorCoagulationNonspecific esteraseImmunologyPlateletCycloheximideBlood CoagulationCells CulturedNature
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Efficient Synthesis and X-ray Structure of [1,2,4]Triazolo[4,3-a]pyridines via Oxidative Cyclization Using N-Chlorosuccinimide (NCS)

2021

Triazolopyridines are a family of compounds that, owing to their biological activity, have many pharmaceutical applications. In this study, 3-(pyridine-4-yl)-[1,2,4]triazolo[4,3-a]pyridine and 6-bromo-3-(pyridine-4-yl)-[1,2,4]triazolo[4,3-a]pyridine were synthesized by using the chlorinated agent NCS for hydrazones under very mild conditions. The characterization of these compounds was achieved by 1H NMR, 13C NMR, FTIR, MS and X-ray diffraction. The compound 3-(pyridine-4-yl)-[1,2,4]triazolo[4,3-a]pyridine was crystallized in the monoclinic space group P 21/c with a = 15.1413(12), b = 6.9179(4), c = 13.0938(8) Å, β = 105.102(6)°, V = 1324.16(16)Å3, Z = 4, and R = 0.0337. Also compound 6-bro…

N-ChlorosuccinimideH-bondingcrystal structureCrystallographysynthesisHydrogen bondGeneral Chemical EngineeringCrystal structureCarbon-13 NMRCondensed Matter PhysicsMedicinal chemistryInorganic Chemistrychemistry.chemical_compoundNCSchemistryQD901-999PyridineProton NMRGeneral Materials ScienceFourier transform infrared spectroscopy124-triazolo[43-<i>a</i>]pyridineMonoclinic crystal systemCrystals
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