Search results for "init"

showing 10 items of 6629 documents

Protonation of the Biliverdin IXα Chromophore in the Red and Far-Red Photoactive States of a Bacteriophytochrome

2019

The tetrapyrrole chromophore biliverdin IXα (BV) in the bacteriophytochrome from Deinococcus radiodurans (DrBphP) is usually assumed to be fully protonated, but this assumption has not been systematically validated by experiments or extensive computations. Here, we use force field molecular dynamics simulations and quantum mechanics/molecular mechanics calculations with density functional theory and XMCQDPT2 methods to investigate the effect of the five most probable protonation forms of BV on structural stability, binding pocket interactions, and absorption spectra in the two photochromic states of DrBphP. While agreement with X-ray structural data and measured UV/vis spectra suggest that …

Absorption spectroscopyProtein ConformationPopulationProtonationMolecular Dynamics SimulationCrystallography X-Ray010402 general chemistryPhotochemistry01 natural sciencesArticlequantum chemistrychemistry.chemical_compoundMolecular dynamicsPhotochromismBacterial Proteins0103 physical scienceskvanttikemiaMaterials ChemistrymolekyylidynamiikkaPhysical and Theoretical Chemistryeducationta116excited statesphytochromeeducation.field_of_studyBinding SitesBiliverdin010304 chemical physicsChemistryBiliverdineta1182Chromophoremolecular dynamics3. Good health0104 chemical sciencesSurfaces Coatings and FilmsSpectrophotometry UltravioletDensity functional theoryDeinococcusvalokemiaproteiinitThe Journal of Physical Chemistry B
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On the Low-Lying Excited States ofsym-Triazine-Based Herbicides

2005

We report a joint computational and luminescence study on the low-lying excited states of sym-triazines, namely, 1,3,5-triazine (1) and the ubiquitous herbicides atrazine [6-chloro-N2-ethyl-N4-isopropyl-1,3,5-triazine-2,4-diamine (2)] and ametryn [6-methylthio-N2-ethyl-N4-isopropyl-1,3,5-triazine-2,4-diamine (3)]. Geometrical structures, energetics, and transition and state properties of I and 2 were computed at the TD-DFT, CASSCF, and CASPT2 levels of theory. The fluorescence and phosphorescence emission spectra, lifetimes, and fluorescence quantum yields were measured for the three compounds, and from these, the energies of the lowest excited states and their corresponding radiative rates…

Absorption spectroscopyQuantum yieldPhotochemistryMolecular physicsAbsorptionAb initio quantum chemistry methodsOscillometryPressureRadiative transferEmission spectrumPhysical and Theoretical ChemistryMolecular StructureChemistry PhysicalHerbicidesTriazinesChemistryTemperatureHydrogen-Ion ConcentrationModels TheoreticalAtomic and Molecular Physics and OpticsSpectrometry FluorescenceModels ChemicalSpectrophotometryExcited stateAtrazineIndicators and ReagentsPhosphorescenceLuminescenceSoftwareChemPhysChem
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Analysis of the U L3-edge X-ray absorption spectra in UO2 using molecular dynamics simulations

2017

This work was supported by a grant from the Swiss National Supercomputing Centre (CSCS) under the project ID s444. The resource allocation within the PSI share at CSCS and on the PSI compute cluster Merlin4 is also acknowledged. D. B. is grateful for a fellowship within the Sciex-NMS programme. A. K. was supported by Latvian Science Council Grant no. 187/2012.

Absorption spectroscopyUranium dioxideAb initioEnergy Engineering and Power Technologychemistry.chemical_elementNanotechnology02 engineering and technologyMolecular dynamics01 natural sciencesMolecular physicschemistry.chemical_compoundUranium dioxide0103 physical sciences:NATURAL SCIENCES:Physics [Research Subject Categories]Safety Risk Reliability and QualitySpectroscopyAbsorption (electromagnetic radiation)Waste Management and Disposal010302 applied physicsPhysicsX-ray absorption spectroscopyExtended X-ray absorption fine structureX-ray absorption spectroscopyUranium021001 nanoscience & nanotechnologyEXAFSNuclear Energy and Engineeringchemistry0210 nano-technologyCP2K
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Remembrance of the historian Vicent Llombart

2017

Esta evocación muestra cómo la formación inicial que recibió Vicent Llombart en el Seminario de historia del pensamiento económico en la Universidad de Valencia fue decisiva, pero no suficiente, para entender una trayectoria rotunda por sus contribuciones. Su propósito decidido, su firme exigencia personal y su apertura intelectual permanente nos ayudan a comprender mejor a un gran historiador. This remembrance shows how the initial training that Vicent Llombart received at the Seminar on the History of Economic Thought at the University of Valencia was crucial, although not the only element, to understanding a prominent academic career with so relevant contributions. His determined purpose…

Academic careerHistory of economic thoughtbiographyCharacter (symbol)biografíaUniversidad de ValenciaVicent LlombartHistoria económicaInitial trainingAestheticsUniversity of ValenciaOpenness to experienceSociologyElement (criminal law)Iberian Journal of the History of Economic Thought
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Energy analysis of a non-linear dynamic impact using FEM

2014

In the car industry, the Finite Element Method (FEM) is being more and more used to analyze the crashworthiness performance of vehicles. In order to validate the results, these impact simulations are normally compared with real crash footage and acceleration data. This paper studies the deformation- and energy output of a simple dummy model during a non-linear dynamic impact. The dummy model is crashed into an obstacle at three different velocities to observe the energy dissipated through different damping mechanisms. Furthermore, in impact simulations, material damping plays an important role in energy dissipation. However, it can be difficult to determine realistic damping parameter value…

AccelerationEngineeringWork (thermodynamics)business.industryObstacleCrashworthinessStructural engineeringDissipationDeformation (meteorology)businessEnergy (signal processing)Finite element methodProceeding of the 11th World Congress on Intelligent Control and Automation
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Carbonate/evaporitic sedimentation during the Messinian salinity crisis in active accretionary wedge basins of the northern Calabria, southern Italy

2020

Abstract This work deals with Messinian deposits belonging to the Neogene infill of the Rossano and Belvedere Basins, respectively developed along the fore-arc and the back-arc areas of the north Calabria accretionary wedge. The main goal is to characterize the carbonate and evaporitic sedimentation during the Messinian Salinity Crisis, in the general framework of the basin architecture and the interplay between eustatic vs tectonic controlled sea-level variations. Fieldwork integrated with seismic lines and well logs interpretations led to the revision of the general stratigraphy of the basins and the proposal of a new sequential stratigraphic model driven by cyclic sea-level variations. E…

Accretionary wedgeSettore GEO/02 - Geologia Stratigrafica E SedimentologicaEvaporiteTerrigenous sedimentStratigraphyGeochemistryCalabriaGeologySettore GEO/01 - Paleontologia E PaleoecologiaStructural basinOceanographyNeogeneSea level changeschemistry.chemical_compoundTectonicsGeophysicschemistryMessinian salinity crisiCarbonateEconomic GeologyCarbonate sedimentEvaporitic sedimentGeologyMarine transgressionMarine and Petroleum Geology
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Modelling Aspects in Accumulative Roll Bonding process by Explicit Finite Element Analysis

2013

Accumulative Roll-Bonding (ARB) process is a severe plastic deformation (SPD) process, capable of developing grains below 1 μm in diameter and improving mechanical properties of the material. In this study, the authors compared two different FE-codes with respect of its applicability for numerical analysis of the ARB process. Modelling this process was achieved using the explicit code for Abaqus/CAE both in 2D and 3D. The proposed model was used to assess the impact of ARB cycles on the final material properties. The numerical results in 2D and 3D were compared and contrasted. The research work presented in this paper is focused on the simulation optimization based on CPU time minimization.…

Accumulative Roll Bonding Aluminum alloy Material properties Explicit finite element analysis
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The Bi sulfates from the Alfenza Mine, Crodo, Italy: An automatic electron diffraction tomography (ADT) study

2014

We report about three bismuth sulfates from mineralized quartz dikes from Alfenza (Crodo, Italy), two new phases and a rare mineral, cannonite, all growing on bismuthinite. The first new phase occurs as white, "hortensia-like" aggregates of pseudo-hexagonal platelets, with perfect basal cleavage, similar to 20 mu m wide and few micrometers thick. The approximate composition is Bi2O2(SO4), and cell parameters and symmetry, as determined by automatic diffraction tomography, are a = 22.0(4), b = 16.7(3), c = 15.9(3) angstrom, beta = 102.9(5)degrees, space group Pc or P2/c. A major stacking disorder is detected by HR-SEM images and electron diffraction data.The second new phase was detected onl…

AcicularMaterials scienceElectron crystallography automatic diffraction tomography bismuth sulfate cannonite porous phaseElectron crystallographyElectron crystallography; automatic diffraction tomography; bismuth sulfate; cannonite; porous phaseElectron crystallographychemistry.chemical_elementautomatic diffraction tomographyengineering.materialGEO/06 - MINERALOGIABismuthbismuth sulfateBismuthiniteDiffraction tomographyCrystallographyGeophysicschemistryElectron diffractionGeochemistry and PetrologyPhase (matter)engineeringcannoniteQuartzElectron crystallography; bismuth sulfate; cannonite; automatic diffraction tomographyporous phase
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Technical Note: Prediction Models of Airborne Sound Insulation of Multilayer Materials with Viscoelastic Thin Sheets

2008

The growing introduction of new insulation materials in building acoustics has caused an increase of the importance of the prediction tools. Appropriate simulations allow strictly necessary laboratory measurements to be identified. In this way, costs are reduced. The demands of new legislation has resulted in the appearance of various software designed to facilitate prediction. The prediction models are based on different hypotheses: adaptation of impedances, spatial behaviour of spectral components, statistical energy distribution, the Finite Element Method (FEM), etc. Each of these models and methods offer advantages and contain limitations. In this paper, different models for prediction…

Acoustics and UltrasonicsComputer sciencebusiness.industryMechanical EngineeringAcousticsMechanical engineeringTechnical noteBuilding and ConstructionViscoelasticityFinite element methodSoundproofingSoftwarebusinessAdaptation (computer science)Electrical impedancePredictive modellingBuilding Acoustics
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A SYMMETRIC AND POSITIVE DEFINITE BEM FOR 2-D FORCED VIBRATIONS

1997

A BEM formulation for 2D elastodynamics in the time domain has been presented. The formulation gives a resolving system that involves boundary displacements only. The stiffness and mass matrices of the boundary discretized body are frequency independent, symmetric and positive definite

Acoustics and UltrasonicsDiscretizationMechanical EngineeringMathematical analysisStiffnessBoundary (topology)Positive-definite matrixCondensed Matter PhysicsVibrationComputer Science::Computational Engineering Finance and ScienceMechanics of MaterialsmedicineTime domainmedicine.symptomBoundary element methodMathematicsJournal of Sound and Vibration
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