Search results for "kinetics"

showing 10 items of 2224 documents

Influence of surface morphology on melting of polymer crystals II. Loops of random length and partially random reentry

1972

Abstract The melting behavior of single crystals with loops of random length and partially random reentry has been calculated under two different assumptions: (1) at each temperature the loops have an equilibrium end-to-end distance distribution and (2) a certain end-to-end distance distribution of the loops, ω(h), determined by the kinetics of the crystallization is frozen in and maintained during the whole heating process. The ω(h) is calculated by considering the loop formation process during crystallization and by introducing a parameter λ which expresses the tendency of the chains for adjacent reentry. In both cases a melting range is obtained. In case 2, the melting range depends stro…

Surface (mathematics)Range (particle radiation)Materials scienceMorphology (linguistics)Polymers and PlasticsKineticsThermodynamicsGeneral ChemistryReentryCondensed Matter Physicslaw.inventionLoop (topology)Distribution (mathematics)lawMaterials ChemistryCrystallizationJournal of Macromolecular Science, Part B
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Quantifying the limits of transition state theory in enzymatic catalysis

2017

Significance Transition state theory (TST) is the most popular theory to calculate the rates of enzymatic reactions. However, in some cases TST could fail due to the violation of the nonrecrossing hypothesis at the transition state. In the present work we show that even for one of the most controversial enzymatic reactions—the hydride transfer catalyzed by dihydrofolate reductase—the error associated to TST represents only a minor correction to the reaction rate. Moreover, this error is actually larger for the reaction in solution than in the enzymatic active site. Based on this finding and on previous studies we propose an “enzymatic shielding” hypothesis which encompasses various aspects …

Surface (mathematics)enzymatic catalysisDegrees of freedom (statistics)Molecular Dynamics Simulation010402 general chemistry01 natural sciencesEnzyme catalysisReaction coordinateReaction rateTransition state theoryMolecular dynamicsdihydrofolate reductasetransmission coefficientComputational chemistry0103 physical sciencesHumansdynamic effectsStatistical physicsIonsMultidisciplinary010304 chemical physicsChemistryState (functional analysis)Biological Sciencesbacterial infections and mycoses0104 chemical sciencesChemistryBiophysics and Computational BiologyKineticsTetrahydrofolate Dehydrogenasetransition state theoryPhysical SciencesBiocatalysisProceedings of the National Academy of Sciences
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Experimental and theoretical evidence of overcharging of calcium silicate hydrate

2007

International audience; Electrokinetic measurements such as electrophoresis may show an inversion of the effective surface charge of colloidal particle called overcharging. This phenomenon has been studied by various theoretical approaches but up to now very few attempts of confrontation between theory and experiment have been conducted. In this work we report electrophoretic measurements as well as Monte Carlo simulations of the electrokinetic potential for the surface of calcium silicate hydrate (Csingle bondSsingle bondH), which is the major constituent of hydrated cement. In the simulations, the surface charge of Csingle bondSsingle bondH nanoparticles in equilibrium with the ionic solu…

Surface PropertiesAnalytical chemistry02 engineering and technology010402 general chemistry01 natural sciencesBiomaterialsElectrokinetic phenomenachemistry.chemical_compoundColloid and Surface ChemistryZeta potentialElectrochemistrySurface chargeColloidsCalcium silicate hydrateParticle SizeMonte Carlo simulationRange (particle radiation)Physics::Biological PhysicsQuantitative Biology::BiomoleculesCalcium silicate hydrateSilicatesWaterZeta potentialCalcium Compounds021001 nanoscience & nanotechnologyElectrostatics0104 chemical sciencesSurfaces Coatings and FilmsElectronic Optical and Magnetic Materials[ PHYS.PHYS.PHYS-CHEM-PH ] Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]ElectrophoresisKineticschemistryModels ChemicalChemical physicsSurface charge titrationOverchargingCalcium silicateNanoparticles[PHYS.PHYS.PHYS-CHEM-PH]Physics [physics]/Physics [physics]/Chemical Physics [physics.chem-ph]0210 nano-technologyMonte Carlo Method
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A surface hopping algorithm for nonadiabatic minimum energy path calculations

2015

The article introduces a robust algorithm for the computation of minimum energy paths transiting along regions of near-to or degeneracy of adiabatic states. The method facilitates studies of excited state reactivity involving weakly avoided crossings and conical intersections. Based on the analysis of the change in the multiconfigurational wave function the algorithm takes the decision whether the optimization should continue following the same electronic state or switch to a different state. This algorithm helps to overcome convergence difficulties near degeneracies. The implementation in the MOLCAS quantum chemistry package is discussed. To demonstrate the utility of the proposed procedur…

Surface PropertiesComputationSurface hoppingCASSCFretinalHeterocyclic Compounds 1-RingHeterocyclic CompoundsasulamConvergence (routing)dioxetaneAdiabatic processWave functionSchiff BasesChemistrysurface hopping algorithmGeneral ChemistryKineticsComputational MathematicsExcited statePath (graph theory)RetinaldehydeQuantum TheoryThermodynamicsCarbamatesCASSCF; asulam; dioxetane; minimum energy path; retinal; surface hopping algorithm; thymineProtonsDegeneracy (mathematics)Algorithmminimum energy pathAlgorithmsThymineJournal of Computational Chemistry
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Halloysite nanotubes filled with salicylic acid and sodium diclofenac: effects of vacuum pumping on loading and release properties

2021

AbstractIn this work, we investigated the effects of the vacuum pumping on both the loading efficiencies and the release kinetics of halloysite nanotubes filled with drug molecules dissolved in ethanol. As model drugs, salicylic acid and sodium diclofenac were selected. For comparison, the loading of the drug molecules was conducted on platy kaolinite to explore the key role of the hollow tubular morphology on the filling mechanism of halloysite. The effects of the pressure conditions used in the loading protocol were interpreted and discussed on the basis of the thermodynamic results provided by Knudsen thermogravimetry, which demonstrated the ethanol confinement inside the halloysite cavi…

Sustained release Clay nanoparticles Drug loading Halloysite nanotubes Knudsen thermogravimetryMaterials scienceKineticsNanochemistryDiclofenac Sodiumengineering.materialHalloysiteThermogravimetryChemical engineeringengineeringKaoliniteMoleculeFourier transform infrared spectroscopySettore CHIM/02 - Chimica FisicaJournal of Nanostructure in Chemistry
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Analysis of discrete and continuous distributions of ventilatory time constants from dynamic computed tomography.

2005

In this study, an algorithm was developed to measure the distribution of pulmonary time constants (TCs) from dynamic computed tomography (CT) data sets during a sudden airway pressure step up. Simulations with synthetic data were performed to test the methodology as well as the influence of experimental noise. Furthermore the algorithm was applied to in vivo data. In five pigs sudden changes in airway pressure were imposed during dynamic CT acquisition in healthy lungs and in a saline lavage ARDS model. The fractional gas content in the imaged slice (FGC) was calculated by density measurements for each CT image. Temporal variations of the FGC were analysed assuming a model with a continuous…

SwineInformation Storage and RetrievalComputed tomographyModels BiologicalSensitivity and SpecificitySynthetic dataImaging Three-DimensionalImage Interpretation Computer-AssistedmedicineAnimalsRadiology Nuclear Medicine and imagingComputer SimulationLungSimulationMathematicsRadiological and Ultrasound Technologymedicine.diagnostic_testfungiMathematical analysisTime constantReproducibility of ResultsImage EnhancementNoiseKineticsDistribution (mathematics)Continuous distributionsBreathingVentilatory timePulmonary VentilationTomography X-Ray ComputedAlgorithmsPhysics in medicine and biology
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Pump currents generated by the purified Na+K+-ATPase from kidney on black lipid membranes.

1985

The transport activity of purified Na+K+-ATPase was investigated by measuring the electrical pump current induced on black lipid membranes. Discs containing purified Na+K+-ATPase from pig kidney were attached to planar lipid bilayers in a sandwich-like structure. After the addition of only microM concentrations of an inactive photolabile ATP derivative [P3-1-(2-nitro)phenylethyladenosine 5'-triphosphate, caged ATP] ATP was released after illumination with u.v.-light, which led to a transient current in the system. The transient photoresponse indicates that the discs and the underlying membrane are capacitatively coupled. Stationary pump currents were obtained after the addition of the H+, N…

SwineSodium-Potassium-Exchanging ATPaseLipid BilayersDiaphragm pumpBiologyKidneyGeneral Biochemistry Genetics and Molecular BiologyOuabainValinomycinchemistry.chemical_compoundmedicineAnimalsVanadateNa+/K+-ATPaseLipid bilayerMolecular BiologyIon transporterPhotolysisGeneral Immunology and MicrobiologyGeneral NeuroscienceCell MembraneKineticsBiochemistrychemistryBiophysicsThermodynamicsSodium-Potassium-Exchanging ATPasemedicine.drugResearch Article
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Mycoplasma fermentans-derived lipid inhibits class II major histocompatibility complex expression without mediation by interleukin-6, interleukin-10,…

1996

Mycoplasma cause several diseases in man and animals. Some strains can chronically infect humans, leading to fever or inflammatory syndromes such as arthritis, particularly in immunosuppressed patients. A set of pathogenicity factors shared by many mollicutes may be membrane components that activate macrophages to secrete cytokines and other inflammatory mediators. Mycoplasma-derived high molecular weight material (MDHM) is a macrophage-activating amphiphilic lipid which was purified from Mycoplasma fermentans. We studied the influence of MDHM on the expression of major histocompatibility complex (MHC) class II molecules by mouse resident peritoneal macrophages with an ELISA. Highly purifie…

T cellImmunologyAntigen presentationBiologyNitric OxideMajor histocompatibility complexMicrobiologyMiceAntigenTransforming Growth Factor betaInterferonMHC class ImedicineAnimalsImmunology and AllergyMycoplasma fermentansCells CulturedMycoplasma fermentansMice Inbred C3HInterleukin-6Tumor Necrosis Factor-alphaHistocompatibility Antigens Class IIInterleukinbiology.organism_classificationLipidsInterleukin-10Molecular WeightKineticsmedicine.anatomical_structureInterferon Type IImmunologyProstaglandinsbiology.proteinCytokinesFemaleImmunosuppressive Agentsmedicine.drugEuropean Journal of Immunology
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Primary in vivo T cell reactivity of NZB grafts in H-2 identical allogenic hosts.

1983

By means of the Simonson GVH-assay and the popliteal lymph node (PLN) assay, the T-cell reactivity of NZB mice against H-2 identical allogenic cells was investigated in vivo and compared to that of normal mice. None of the normal mice did react, but a highly significant NZB response could be demonstrated, which did not depend on differences in Mls antigens. These in vivo results extend previous findings of a T-cell hyperreactivity of NZB mice in primary in vitro reactions. They favour the possibility that the T-cell hyperreactivity might be relevant in vivo in facilitating autoimmune responses.

T-LymphocytesImmunologychemical and pharmacologic phenomenaAutoimmune responsesBiologySerologyAutoimmune DiseasesMinor Lymphocyte Stimulatory AntigensGraft vs Host ReactionMiceIn vivoImmunology and AllergyAnimalsLymphocytesMice Inbred BALB CMice Inbred NZBH-2 AntigensT cell reactivityHematologyOrgan SizeIn vitroTransplantationMice Inbred C57BLKineticsLiverMice Inbred DBALymphocyte TransfusionImmunologyPopliteal Lymph NodeSpleenImmunobiology
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A temperature-type model for describing the relationship between fungal growth and water activity

2001

Growth of Penicillium chrysogenum, Aspergillus flavus, Cladosporium cladosporioides and Alternaria alternata at their respective optimum temperatures was studied in Potato Dextrose Agar (PDA) medium at different water activities (a(w)) adjusted with glycerol. The growth rate (mu) was expressed as the increase in colony radius per unit of time. This paper extends the model that showed the relationship between temperature and bacterial growth rate developed by Rosso et al. [J. Theor. Biol. 162 (1993) 447] to describe the influence of a(w) on fungal development. An excellent correlation between the experimental data and the model predictions was obtained, the regression coefficients (r2) were …

TECHNIQUE DE PREVISIONWater activityMohoColony Count MicrobialBacterial growthPenicillium chrysogenumMicrobiologyAlternaria alternataModels Biological03 medical and health sciencesBotanyFood scienceGrowth rate[SDV.MP] Life Sciences [q-bio]/Microbiology and ParasitologyComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesbiology030306 microbiologyTemperatureAlternariaWaterGeneral Medicinebiology.organism_classificationPenicillium chrysogenumKinetics[SDV.MP]Life Sciences [q-bio]/Microbiology and ParasitologyFood MicrobiologyPotato dextrose agarMitosporic FungiCladosporiumFood ScienceCladosporiumAspergillus flavus
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