Search results for "ligands"

showing 10 items of 721 documents

The selection of aptamers specific for membrane molecular targets

2010

AbstractA growing number of RNA aptamers have been selected experimentally using the SELEX combinatorial approach, and these aptamers have several advantages over monoclonal protein antibodies or peptides with respect to their applications in medicine and nanobiotechnology. Relatively few successful selections have been reported for membrane molecular targets, in contrast to the situation with non-membrane molecular targets. This review compares the procedures and techniques used in selections against membrane proteins and membrane lipids. In the case of membrane proteins, the selections were performed against soluble protein fragments, detergent-membrane protein mixed micelles, whole cells…

AptamerMembrane lipidsReviewBiologyAptamersBiochemistryCell membraneMembrane LipidsRaftsMembrane transportersmedicineMolecular BiologyMembranesSELEXVesicleCell MembraneSELEX Aptamer TechniqueMembrane ProteinsCell BiologyAptamers NucleotideLipidsmedicine.anatomical_structureMembraneMembrane proteinBiochemistryLiposomesVirusesSELEX Aptamer TechniqueRNASystematic evolution of ligands by exponential enrichmentCellular and Molecular Biology Letters
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Symbiosis between photoactive nanoparticles and their organic ligands.

2013

Photoactive spherical metal and semiconductor nanoparticles (NPs) are smart systems that exhibit unique properties, such as a high surface-to-volume ratio, a broad absorption spectrum and size-dependent properties. They are capped with a considerable number of ligands required to give rise to stable organic and aqueous NP colloidal solutions. In addition, the ligands can also be used to introduce functionality at the NP periphery. In this case, the NP could act as a 3D-scaffold, which would make a high local concentration of a functional moiety at the NP periphery possible, moreover, the photophysical properties of the NP could be tuned. The combined action of the organic capping and the in…

Aqueous solutionAbsorption spectroscopyLigandChemistryNanoparticleNanotechnologyGeneral MedicineLigandsBiochemistryMetalColloidMicroscopy Electron Transmissionvisual_artvisual_art.visual_art_mediumMoietyMoleculeNanoparticlesSpectrophotometry UltravioletPhysical and Theoretical ChemistryOrganic ChemicalsSymbiosisPhotochemistry and photobiology
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Sequestration of alkyltin(IV) cations by complexation with amino-polycarboxylic chelating agents

2013

Abstract The binding capacity of four amino-polycarboxylic ligands (APCs) [nitrilotriacetate (NTA), ethylenediamine- N , N , N′ , N′ -tetraacetate (EDTA), (S,S)-ethylenediamine- N , N ′-disuccinic acid (S,S-EDDS) and diethylenetriamine- N , N , N′ , N″ , N″ -pentaacetate (DTPA)] towards mono-, di- and tri-alkyltin(IV) cations [(CH 3 )Sn 3 + , (CH 3 ) 2 Sn 2 + , (C 2 H 5 ) 2 Sn 2 + , (CH 3 ) 3 Sn + or (C 2 H 5 ) 3 Sn + ] was studied, in aqueous solutions, by ISE-H + potentiometry, at I  = 0.1 mol L − 1 (NaCl) and at T  = 298.15 K. In all the systems R x Sn (4 − x)+  − APC (R = CH 3 or C 2 H 5 ) a strong 1:1 species is formed together with protonated, hydroxo and dinuclear complexes. The valu…

Aqueous solutionComplexation in aqueous solutionStereochemistryLigandEthylenediamineProtonationAlkyltin(IV) cations; Amino-polycarboxylic ligands; Complexation in aqueous solution; Sequestration ability of complexones;Condensed Matter PhysicsMedicinal chemistryAtomic and Molecular Physics and OpticsAlkyltin(IV) cationElectronic Optical and Magnetic MaterialsIonAmino-polycarboxylic ligandchemistry.chemical_compoundSequestration ability of complexoneschemistryDiethylenetriamineMaterials ChemistryChelationSettore CHIM/01 - Chimica AnaliticaPhysical and Theoretical ChemistrySimple correlationSpectroscopy
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Ti(iv)-amino triphenolate complexes as effective catalysts for sulfoxidation

2010

C 3 -symmetric Ti (IV) amino triphenolate complexes efficiently catalyze, without previous activation and in excellent yields, the oxidation of sulfides at room temperature, using both CHP and the more environment friendly aqueous hydrogen peroxide as terminal oxidants, with catalyst loadings down to 0.01%. The Ti(IV) catalysts and the intermediate Ti(IV)-peroxo complexes have been characterized in solution by 1H NMR and ESI-MS techniques and via density functional studies.

Aqueous solutionoxidationChemistryhydrogen peroxideEnvironmentally friendlysulfoxidationCatalysisInorganic Chemistrychemistry.chemical_compoundtitanium complexes; sulfoxidation; hydrogen peroxide; tripodal ligands; c3 symmetry; oxidationProton NMROrganic chemistryFunctional studiestitanium complexesc3 symmetryHydrogen peroxidetripodal ligands
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Highly Robust but Surface-Active : An N-Heterocyclic Carbene-Stabilized Au25 Nanocluster

2019

Surface organic ligands play a critical role in stabilizing atomically precise metal nanoclusters in solutions. However, it is still challenging to prepare highly robust ligated metal nanoclusters that are surface-active for liquid-phase catalysis without any pre-treatment. Now, an N-heterocyclic carbene-stabilized Au25 nanocluster with high thermal and air stabilities is presented as a homogenous catalyst for cycloisomerization of alkynyl amines to indoles. The nanocluster, characterized as [Au25(iPr2-bimy)10Br7]2+ (iPr2-bimy=1,3-diisopropylbenzimidazolin-2-ylidene) (1), was synthesized by direct reduction of AuSMe2Cl and iPr2-bimyAuBr with NaBH4 in one pot. X-ray crystallization analysis …

Au25katalyytitkatalyysicarbene ligandsnanohiukkasetgold nanoclustershomogeneous catalysisgold catalysiskulta
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Spacer-separated sialyl LewisX cyclopeptide conjugates as potential E-selectin ligands.

2006

Completely protected sialyl LewisX azide was synthesized from a neolactosamine azide precursor carrying a 3-O-allyloxycarbonyl group as the temporary protecting group. After its Pd(0)-catalyzed deprotection and stereoselective alpha-fucosylation, the obtained LewisX azide was subjected to O-deacetylation in the galactose unit and subsequent regio- and stereoselective sialylation. Reduction of the anomeric azido group afforded the sialyl LewisX amine building block. Two molecules of this tetrasaccharide ligand were conjugated to a preformed cyclooctapeptide containing two equidistant l-asparagine units equipped with carboxy-terminated tetraethyleneglycol side chains to give, after deprotecti…

AzidesAnomerStereochemistryNeutrophilsOligosaccharidesConjugated systemLigandsBiochemistryPeptides CyclicAnalytical Chemistrychemistry.chemical_compoundMiceLewis Blood Group AntigensTetrasaccharideAnimalsProtecting groupSialyl Lewis X AntigenLigandOrganic ChemistryGlycopeptidesGeneral MedicinechemistryAmine gas treatingAzideE-SelectinConjugateCarbohydrate research
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Stepwise formation of a pentanuclear Ni4Cu heterometallic complex exhibiting a vertex-sharing defective double-cubane core and diphenoxo- and phenoxo…

2013

Sequential reaction of a N5O3 octadentate tripodal ligand with Ni(2+) and subsequently with Cu(2+) and azide ligand afforded the first example of a heterobridged (phenoxo/μ(1,1)-azido) pentanuclear heterometallic (Ni4Cu) compound, which exhibits a centrosymmetric vertex-sharing defective double-cubane structure. The study of the magnetic properties reveals that the compound shows ferromagnetic interaction interactions, leading to an S = 9/2 spin ground state. Density functional theory calculations on the X-ray structure and model compounds predict ferromagnetic interactions through the magnetic exchange pathways involving each couple of metal ions.

AzidesMagnetic Resonance SpectroscopyMolecular StructureChemistryStereochemistryMetal ions in aqueous solutionStereoisomerismCrystallography X-RayLigandsVertex (geometry)Inorganic Chemistrychemistry.chemical_compoundCrystallographyFerromagnetismCubaneCoordination ComplexesNickelTripodal ligandQuantum TheoryDensity functional theoryAzidePhysical and Theoretical ChemistryGround stateCopperInorganic chemistry
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Enzymatic Synthesis of 3′–5′, 3′–5′ Cyclic Dinucleotides, Their Binding Properties to the Stimulator of Interferon Genes Adaptor Protein, and Structu…

2021

The 3′–5′, 3′–5′ cyclic dinucleotides (3′3′CDNs) are bacterial second messengers that can also bind to the stimulator of interferon genes (STING) adaptor protein in vertebrates and activate the host innate immunity. Here, we profiled the substrate specificity of four bacterial dinucleotide synthases from Vibrio cholerae (DncV), Bacillus thuringiensis (btDisA), Escherichia coli (dgcZ), and Thermotoga maritima (tDGC) using a library of 33 nucleoside-5′-triphosphate analogues and then employed these enzymes to synthesize 24 3′3′CDNs. The STING affinity of CDNs was evaluated in cell-based and biochemical assays, and their ability to induce cytokines was determined by employing human peripheral …

BacteriaAlcoholsPeptides and proteinsFree energyLigandsBiochemistry
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β-Catenin Activation Regulates Tissue Growth Non–Cell Autonomously in the Hair Stem Cell Niche

2014

Coordinated Hair Growth Wnt/β-catenin signaling is a key pathway that plays a conserved role in regulating stem cell function during adult tissue regeneration. Using time-lapse imaging of live mice, Deschene et al. (p. 1353 ) show that genetic activation of β-catenin within hair follicle stem cells generates axes of hair growth by coordinated cell divisions and cell movements, even when the normal niches—the dermal papillae—are laser-ablated. Activated β-catenin enhances Wnt ligand secretion, and these ligands can then activate Wnt signaling in adjacent cells that do not have activated β-catenin, indicating how activated stem cells could influence neighboring cells during normal growth and …

Beta-cateninWnt ProteinCellular differentiationLigandBiologyLigandsModels BiologicalArticleMiceStem CellmedicineAnimalsStem Cell NicheAnimals; Cell Differentiation; Cell Division; Hair; Hair Follicle; Ligands; Mice; Models Biological; Mutation; Stem Cell Niche; Stem Cells; Tamoxifen; Up-Regulation; Wnt Proteins; beta Catenin; Wnt Signaling Pathway; Medicine (all); MultidisciplinaryWnt Signaling Pathwaybeta CateninMultidisciplinaryintegumentary systemAnimalStem CellsMedicine (all)Regeneration (biology)Mesenchymal stem cellWnt signaling pathwayCell DifferentiationHair follicleUp-RegulationCell biologyWnt ProteinsTamoxifenmedicine.anatomical_structureCateninMutationbiology.proteinStem cellHair FollicleCell DivisionHairScience
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Full and Partial Agonism of Ionotropic Glutamate Receptors Indicated by Molecular Dynamics Simulations

2011

Ionotropic glutamate receptors (iGluRs) are synaptic proteins that facilitate signal transmission in the central nervous system. Extracellular iGluR cleft closure is linked to receptor activation; however, the mechanism underlying partial agonism is not entirely understood. Full agonists close the bilobed ligand-binding domain (LBD), while antagonists prevent closure; the transmembrane ion channel either opens or stays closed, respectively. Although some bulky partial agonists produce intermediate iGluR-LBD closure, the available crystal structures also imply that the cleft can be shut with certain partial agonists. Recently, we have shown that the iGluR-LBD closure stage can be recreated b…

Binding SitesProtein ConformationStereochemistryChemistryGeneral Chemical EngineeringGlutamate receptorHydrogen BondingGeneral ChemistryMolecular Dynamics SimulationLibrary and Information SciencesNeurotransmissionCrystallography X-RayLigandsReceptors Ionotropic GlutamateLigand (biochemistry)Partial agonistTransmembrane proteinComputer Science ApplicationsBiophysicsReceptorIon channelProtein BindingIonotropic effectJournal of Chemical Information and Modeling
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