Search results for "microbial"
showing 10 items of 2041 documents
Degradation of simazine by microorganisms isolated from soils of Spanish olive fields.
2005
Special Issue: Pesticides, Microbial Functions and Biodiversity in Soil; The capability of the microbial flora isolated from an olive field soil from Andalusia to mineralize simazine has been analyzed. From this soil, a group of bacteria capable of degrading 60 mg simazine litre-1 in less than a week has been isolated. These microorganisms showed a low capacity for degrading this herbicide to carbon dioxide. When total DNA was isolated from this group of bacteria, we were able to detect by PCR the presence of only the atzC and the trzN genes. Some components of this bacterial population have been identified by sequencing of specific fragments from bacterial 16S rDNA, including Variovorax sp…
Increase in gut microbiota after immune suppression in baculovirus-infected larvae.
2013
Spodoptera exigua microarray was used to determine genes differentially expressed in S. exigua cells challenged with the species-specific baculovirus SeMNPV as well as with a generalist baculovirus, AcMNPV. Microarray results revealed that, in contrast to the host transcriptional shut-off that is expected during baculovirus infection, S. exigua cells showed a balanced number of up- and down-regulated genes during the first 36 hours following the infection. Many immune-related genes, including pattern recognition proteins, genes involved in signalling and immune pathways as well as immune effectors and genes coding for proteins involved in the melanization cascade were found to be down-regul…
Listeria monocytogenes Differential Transcriptome Analysis Reveals Temperature-Dependent Agr Regulation and Suggests Overlaps with Other Regulons
2012
Listeria monocytogenes is a ubiquitous, opportunistic pathogenic organism. Environmental adaptation requires constant regulation of gene expression. Among transcriptional regulators, AgrA is part of an auto-induction system. Temperature is an environmental cue critical for in vivo adaptation. In order to investigate how temperature may affect AgrA-dependent transcription, we compared the transcriptomes of the parental strain L. monocytogenes EGD-e and its Delta agrA mutant at the saprophytic temperature of 25 degrees C and in vivo temperature of 37 degrees C. Variations of transcriptome were higher at 37 degrees C than at 25 degrees C. Results suggested that AgrA may be involved in the regu…
A New Method for Extracting Skin Microbes Allows Metagenomic Analysis of Whole-Deep Skin
2013
In the last decade, an extensive effort has been made to characterize the human microbiota, due to its clinical and economic interests. However, a metagenomic approach to the skin microbiota is hampered by the high proportion of host DNA that is recovered. In contrast with the burgeoning field of gut metagenomics, skin metagenomics has been hindered by the absence of an efficient method to avoid sequencing the host DNA. We present here a method for recovering microbial DNA from skin samples, based on a combination of molecular techniques. We have applied this method to mouse skin, and have validated it by standard, quantitative PCR and amplicon sequencing of 16S rRNA. The taxonomic diversit…
BIO-ELECTROCHEMICAL SYSTEMS FOR ENERGY GATHERING FROM WASTEWATER
2017
It has been calculated that annually 1.5 × 108 MWh are wasted as municipal, industrial, and animal wastewater. The recovery of at least part of this energy it is of primary importance in order to approach circular economy. As AD, MFC is a biotechnology that uses microorganism into an anaerobic environment for energy conversion and recovery. Differently from AD, MFC belongs to the sub-division of Bio-Electrochemical Systems (BESs), having the advantage to achieve a direct electrical output. Exoelectrogens bacteria are employed, capable to close their respiratory electron chain on the surface of an electrode. Up to know, BESs were used to extract energy from a multitude of wastes, such as dis…
Comparison of the Fungistatic Activity of Selected Essential Oils Relative to
2018
The aim of the study was to determine the chemical composition of lemon, rosewood, geranium and rosemary oils, and compare their effect on the sensitivity of Fusarium graminearum ZALF 24 and Fusarium graminearum ZALF 339 isolated from infected cereals. The tested oils were added to Potato Dextrose Agar (PDA) medium at concentrations of 0.125%, 0.25%, 0.5%, 1.0% and 2.0%. The activity of the oils on inhibition of the linear growth of mycelium was evaluated by measuring the growth of fungal colonies (growth index), while the fungistatic activity was evaluated on the basis of the percentage growth inhibition of a fungal colony and calculated according to Abbott’s formula. The sensitivity of th…
Recent developments in the use of viability dyes and quantitative PCR in the food microbiology field.
2013
The increase in foodborne outbreaks highlights the need for rapid, sensitive and specific methods for food safety monitoring, enabling specific detection and quantification of viable foodborne pathogens. Real-time PCR (qPCR) combined with the use of viability dyes, recently introduced, fulfils all these requirements. The strategy relies on the use of DNA-binding molecules such as propidium monoazide (PMA) or ethidium monoazide (EMA) as sample pretreatment previous to the qPCR. These molecules permeate only membrane-compromised cells and have successfully been applied for different types of foodborne pathogens, including bacteria and viruses. Moreover, those dyes have been explored to monito…
A new model for germination of fungi.
2010
Abstract The objective of this study was to design a germination model dedicated to fungi. The percentage of germinated spores, P(%), depended on the maximum percentage of germination P max (%), the germination time, τ (h) and a design parameter, d (-) according to : P = P max 1 − 1 1 + t τ d . The model was capable to fit satisfactorily either apparent symmetric and asymmetric shapes of germination curves. The accuracy of τ determined by using the logistic or the present model was at least twice that obtained by the Gompertz equation. In contrast to the logistic model, the new model is by essence asymmetric. Therefore, its use is consistent with skewed distributions of the individual germi…
Changes in chemical and biological soil properties as induced by anthropogenic disturbance: A case study of an agricultural soil under recurrent floo…
2006
Abstract Monitoring the environmental impact of anthropogenic disturbance on soil ecosystem is of great importance for optimizing strategies for soil use, conservation and remediation. The aim of this study was to assess whether and to what extent a long-term, human-induced disturbance could have affected main chemical and biological properties in an agricultural soil. The study site was a hazel (Corylus avellana L.) orchard located in the area surrounding the volcanic apparatus of Somma-Vesuvius (Southern Italy). For the last two decades, the site has been repeatedly subjected to floodings by wastewaters containing not only alluvial sediments but also potentially hazardous compounds from i…
Microbial communities and novel taxa in « Continental Smokers » of northern Greece
2017
Analogously to the ocean-bottom black/white smokers, “continental smokers” have recently been defined as sites of mantle degassing through continental crust. The goal of this research, carried out within the Deep Carbon Observatory Community, is to investigate the role of deeplysourced fluids in niche ecosystem differentiation in European continental smokers. A 16S rRNA gene survey of microbial communities was carried out on 11 geothermal manifestations of northern Greece, all showing a distinct contribution of mantle fluids (R/Ra up to 1.2) that allow to classify them as continental smokers. The selected sites cover a wide range of temperatures (15-77 °C), pH (6.11-8.46), Eh (-289 – 40 mV)…