Search results for "mimetics"

showing 10 items of 120 documents

Selective recognition of neutral guests in an aqueous medium by a biomimetic calix[6]cryptamide receptor

2015

The design of artificial receptors that can efficiently work in water is a challenging research area. A possible biomimetic approach for the elaboration of such receptors consists of associating a hydrophobic cavity with a polar polyfunctional binding site. On this basis, a hydrophilic calix[6]cryptamide decorated with oligo(ethylene glycol) units (i.e. 8) was synthesized through an efficient [1 + 1] macrocyclization reaction as the key-step. The complexation of neutral molecules was evaluated by NMR spectroscopy through competition experiments either in apolar or aqueous media. In both media, host 8 can bind neutral species that display H-bonding acceptor and donor groups such as amides or…

Models MolecularEthylene GlycolMagnetic Resonance SpectroscopyStereochemistryAllosteric regulationMolecular ConformationCrystallography X-Ray010402 general chemistry01 natural sciencesBiochemistrychemistry.chemical_compoundBiomimetic MaterialsCalixareneUreaMoleculeaqueous mediumartificial receptorsbiomimeticsPhysical and Theoretical ChemistryBinding siteta116010405 organic chemistryHydrogen bondOrganic ChemistryWaterHydrogen BondingNuclear magnetic resonance spectroscopyAmidesAcceptor0104 chemical scienceschemistryCyclizationCalixarenesHydrophobic and Hydrophilic InteractionsEthylene glycolOrganic & Biomolecular Chemistry
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Redox-responsive organometallic foldamers from ferrocene amino acid: Solid-phase synthesis, secondary structure and mixed-valence properties

2011

Oligoferrocenes Fmoc-Fca(n)-OMe (n=3-5) are assembled in a stepwise precise manner from Fmoc-protected ferrocene amino acid Fmoc-Fca-OH (H-Fca-OH = 1-amino-1'-ferrocene carboxylic acid; Fmoc = 9-fluorenylmethyloxycarbonyl) via amide bonds on solid supports by sequential Fmoc deprotection, acid activation and coupling steps. The resulting well-defined oligomers form ordered zigzag structures in THF solution with characteristic hydrogen bonding patterns. Electrochemical experiments reveal sequential oxidations of the individual ferrocene units in these peptides giving mixed-valent cations. Optical intervalence electron transfer is detected by intervalence transitions in the near-IR.

Models MolecularMetallocenesStereochemistryCarboxylic acidProtein Structure SecondaryInorganic Chemistrychemistry.chemical_compoundElectron transferSolid-phase synthesisPolymer chemistryOrganometallic CompoundsFerrous CompoundsAmino AcidsProtein secondary structurechemistry.chemical_classificationFluorenesValence (chemistry)Hydrogen bondSpectrum AnalysisDipeptidesAmino acidSolutionschemistryFerrocenePeptidomimeticsOxidation-ReductionDalton Transactions
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Biomimetic oxygen reduction by cofacial porphyrins at a liquid-liquid interface.

2012

Oxygen reduction catalyzed by cofacial metalloporphyrins at the 1,2-dichlorobenzene−water interface was studied with two lipophilic electron donors of similar driving force, 1,1'-dimethylferrocene (DMFc) and tetrathiafulvalene (TTF). The reaction produces mainly water and some hydrogen peroxide, but the mediator has a significant effect on the selectivity, as DMFc and the porphyrins themselves catalyze the decomposition and the further reduction of hydrogen peroxide. Density functional theory calculations indicate that the biscobaltporphyr- in, 4,5-bis(5-(2,8,13,17-tetraethyl-3,7,12,18-tetramethylporphyrinyl))-9,9-dimethylxanthene, Co2(DPX), actually catalyzes oxygen reduction to hydrogen p…

Models MolecularPorphyrinsMolecular Conformationchemistry.chemical_element02 engineering and technology010402 general chemistryPhotochemistry01 natural sciencesBiochemistryOxygenCatalysisCatalysisElectron Transportchemistry.chemical_compoundColloid and Surface ChemistryBiomimeticsHeterocyclic CompoundsMoleculePerchloric acidFerrous CompoundsHydrogen peroxideta116ElectrodesSelective catalytic reductionGeneral Chemistry021001 nanoscience & nanotechnology0104 chemical sciencesOxygenchemistryQuantum Theory0210 nano-technologySelectivityHydrophobic and Hydrophilic InteractionsTetrathiafulvaleneJournal of the American Chemical Society
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Cyclodextrin and Adamantane Host-Guest Interactions of Modified Hyperbranched Poly(ethylene imine) as Mimetics for Biological Membranes

2011

Models MolecularSurface PropertiesAdamantaneImineBeta-CyclodextrinsAdamantaneCatalysischemistry.chemical_compoundBiomimeticsPolymer chemistryMoleculeParticle SizeFluorescent Dyeschemistry.chemical_classificationCyclodextrinMolecular StructureChemistryCell Membranebeta-CyclodextrinsBiological membraneGeneral ChemistryGeneral MedicineFluoresceinsMembraneSelf-assemblyIminesPolyethylenesAngewandte Chemie
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Synthesis and Structural Model of an α(2,6)-Sialyl-T Glycosylated MUC1 Eicosapeptide under Physiological Conditions

2006

To study the effect of O-glycosylation on the conformational propensities of a peptide backbone, a 20-residue peptide (GSTAPPAHGVTSAPDTRPAP) representing the full length tandem repeat sequence of the human mucin MUC1 and its analogue glycosylated with the (2,6)-sialyl-T antigen on Thr11, were prepared and investigated by NMR and molecular modeling. The peptides contain both the GVTSAP sequence, which is an effective substrate for GalNAc transferases, and the PDTRP fragment, a known epitope recognized by several anti-MUC1 monoclonal antibodies. It has been shown that glycosylation of threonine in the GVTSAP sequence is a prerequisite for subsequent glycosylation of the serine at GVTSAP. Furt…

Models Molecularchemistry.chemical_classificationMagnetic Resonance SpectroscopyGlycosylationMolecular modelChemistryStereochemistryMucin-1Organic ChemistryGlycopeptidesTemperaturePeptideGeneral ChemistryCatalysisEpitopecarbohydrates (lipids)Turn (biochemistry)chemistry.chemical_compoundSolid-phase synthesisBiochemistryBiomimeticsThermodynamicsIndicators and ReagentsProtein secondary structureMUC1Chemistry - A European Journal
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Toward engineering efficient peptidomimetics. Screening conformational landscape of two modified dehydroaminoacids

2013

Effective peptidomimetics should posses structural rigidity and appropriate interaction pattern leading to potential spatial and electronic matching to the target receptor site. Rational design of such small bioactive molecules could push chemical synthesis and molecular modeling toward faster progress in medicinal chemistry. Conformational properties of N-t-butoxycarbonyl-glycine-(E/Z)-dehydrophenylalanine N′,N′-dimethylamides (Boc-Gly-(E/Z)-ΔPhe-NMe2) in chloroform were studied by NMR and IR spectroscopy. The experimental findings were supported by extensive calculations at DFT(B3LYP, M06-2X) and MP2 levels of theory and the β-turn tendency for both isomers of the studied dipeptide were d…

Models MolecularspectroscopyMagnetic Resonance SpectroscopyMolecular modelProtein ConformationBiophysicsInfrared spectroscopydehydrophenylalanineBiochemistryBiomaterialschemistry.chemical_compoundComputational chemistryAmideStructural rigidityE isomersDipeptideOrganic Chemistryconformational analysisß-turn tendencyRational designGeneral MedicineCarbon-13 NMRSolutionschemistryDFT-GIAO calculationsIRProton NMRPeptidomimeticsPeptides13 C-NMRH-NMRZBiopolymers
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Phosphatidylcholine covalently linked to a methacrylate-based monolith as a biomimetic stationary phase for capillary liquid chromatography

2015

Abstract In this study a strategy to immobilize phospholipids onto a polymer-based stationary phase is described. Methacrylate-based monoliths in capillary format (150 × 0.1 mm) were modified by soybean phosphatidylcholine through 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide coupling to obtain stationary phases suitable to mimic cell surface membranes. The covalent coupling reaction involves the phosphate group in phospholipids; therefore, the described methodology is suitable for all types of phospholipids. Immobilization of soy bean phosphatidylcholine on the monolith was confirmed by attenuated total reflectance Fourier transform infrared spectroscopy and gas chromatography-mass spectro…

Monolithic HPLC columnPolymersPhospholipid010402 general chemistryMethacrylate01 natural sciencesBiochemistryChemistry Techniques AnalyticalAnalytical ChemistryHydrophobic effectchemistry.chemical_compoundBiomimeticsEthyldimethylaminopropyl CarbodiimidePhosphatidylcholineMonolithFourier transform infrared spectroscopyPhospholipidsgeographygeography.geographical_feature_categoryChromatography010401 analytical chemistryOrganic ChemistryWaterGeneral Medicine0104 chemical sciencesMembranechemistryPhosphatidylcholinesMethacrylatesHydrophobic and Hydrophilic InteractionsChromatography LiquidJournal of Chromatography A
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Selective Change Driven Imaging: A Biomimetic Visual Sensing Strategy

2011

Selective Change Driven (SCD) Vision is a biologically inspired strategy for acquiring, transmitting and processing images that significantly speeds up image sensing. SCD vision is based on a new CMOS image sensor which delivers, ordered by the absolute magnitude of its change, the pixels that have changed after the last time they were read out. Moreover, the traditional full frame processing hardware and programming methodology has to be changed, as a part of this biomimetic approach, to a new processing paradigm based on pixel processing in a data flow manner, instead of full frame image processing.

Motion analysisComputer scienceComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISIONImage processinglcsh:Chemical technologyBiochemistryArticleAnalytical ChemistryMotionArtificial IntelligenceDigital image processingImage Processing Computer-AssistedComputer SimulationComputer visionlcsh:TP1-1185biomimeticsElectrical and Electronic EngineeringImage sensorInstrumentationPixelbusiness.industrymotion analysisFrame (networking)Atomic and Molecular Physics and OpticsCMOS image sensorArtificial intelligencebusinessAlgorithmsevent-based visionSensors
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Tertiary hyperparathyroidism: a review

2021

Abstract: Tertiary hyperparathyroidism (HPT III) occurs when an excess of parathyroid hormone (PTH) is secreted by parathyroid glands, usually after longstanding secondary hyperparathyroidism. Some authorities reserve the term for secondary hyperparathyroidism that persists after successful renal transplantation. Long-standing chronic kidney disease (CKD) is associated with several metabolic disturbances that lead to increased secretion of PTH, including hyperphosphatemia, calcit-riol deficiency, and hypocalcaemia. Hyperphosphatemia has a direct stimulatory effect on the parathyroid gland cell resulting in nodular hyperplasia and increased PTH secretion. Prolonged hypocalcaemia also causes …

ParathyroidectomyHyperplasiametabolic disturbancesparathyroidec-tomyHypocalcemiaCalcimimeticstertiary hyperparathyroidismKidney TransplantationTransplantation AutologousHyperphosphatemiaParathyroid GlandsParathyroid HormoneHumansHyperparathyroidism SecondaryRenal Insufficiency Chronic
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Peptidomimetics – An infinite reservoir of metal binding motifs in metabolically stable and biologically active molecules

2020

The involvement of metal ions in interactions with therapeutic peptides is inevitable. They are one of the factors able to fine-tune the biological properties of antimicrobial peptides, a promising group of drugs with one large drawback - a problematic metabolic stability. Appropriately chosen, proteolytically stable peptidomimetics seem to be a reasonable solution of the problem, and the use of D-, β-, γ-amino acids, unnatural amino acids, azapeptides, peptoids, cyclopeptides and dehydropeptides is an infinite reservoir of metal binding motifs in metabolically stable, well-designed, biologically active molecules. Below, their specific structural features, metal-chelating abilities and anti…

PeptidomimeticMetal ions in aqueous solutionAntimicrobial peptidesMetal binding sites010402 general chemistryPeptides Cyclic01 natural sciencesBiochemistryInorganic ChemistryPeptoidsHumansMoleculeAmino AcidsChelating Agentschemistry.chemical_classificationBinding SitesBacteria010405 organic chemistryMetal bindingStereoisomerismBiological activityAntimicrobialCombinatorial chemistryAnti-Bacterial Agents0104 chemical sciencesAmino acidchemistryAntimicrobial peptidesPeptidomimeticsJournal of Inorganic Biochemistry
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