Search results for "modeling"
showing 10 items of 4489 documents
On the dimerization of the primitive tRNAs: implications in the origin of genetic code.
2002
RNAs that catalyse their own aminoacylation have been recently selected in vitro. These findings support the notion that the primitive aminoacyl-tRNA synthetases may have been RNAs. In this paper, we propose a structural model for the first aminoacyl-tRNA synthetase consisting of an RNA complex formed between two primitive tRNA molecules through two intermolecular loop-strand interactions, and with implications in the origin of the genetic code.
On the derivation of a linear Boltzmann equation from a periodic lattice gas
2004
We consider the problem of deriving the linear Boltzmann equation from the Lorentz process with hard spheres obstacles. In a suitable limit (the Boltzmann-Grad limit), it has been proved that the linear Boltzmann equation can be obtained when the position of obstacles are Poisson distributed, while the validation fails, also for the "correct" ratio between obstacle size and lattice parameter, when they are distributed on a purely periodic lattice, because of the existence of very long free trajectories. Here we validate the linear Boltzmann equation, in the limit when the scatterer's radius epsilon vanishes, for a family of Lorentz processes such that the obstacles have a random distributio…
Using Statistical and Computer Models to Quantify Volcanic Hazards
2009
Risk assessment of rare natural hazards, such as large volcanic block and ash or pyroclastic flows, is addressed. Assessment is approached through a combination of computer modeling, statistical modeling, and extreme-event probability computation. A computer model of the natural hazard is used to provide the needed extrapolation to unseen parts of the hazard space. Statistical modeling of the available data is needed to determine the initializing distribution for exercising the computer model. In dealing with rare events, direct simulations involving the computer model are prohibitively expensive. The solution instead requires a combination of adaptive design of computer model approximation…
PROBABILISTIC QUANTIFICATION OF HAZARDS: A METHODOLOGY USING SMALL ENSEMBLES OF PHYSICS-BASED SIMULATIONS AND STATISTICAL SURROGATES
2015
This paper presents a novel approach to assessing the hazard threat to a locale due to a large volcanic avalanche. The methodology combines: (i) mathematical modeling of volcanic mass flows; (ii) field data of avalanche frequency, volume, and runout; (iii) large-scale numerical simulations of flow events; (iv) use of statistical methods to minimize computational costs, and to capture unlikely events; (v) calculation of the probability of a catastrophic flow event over the next T years at a location of interest; and (vi) innovative computational methodology to implement these methods. This unified presentation collects elements that have been separately developed, and incorporates new contri…
Premature conclusions about the signal‐to‐noise ratio in structural equation modeling research : A commentary on Yuan and Fang (2023)
2023
In a recent article published in this journal, Yuan and Fang (British Journal of Mathematical and Statistical Psychology, 2023) suggest comparing structural equation modeling (SEM), also known as covariance-based SEM (CB-SEM), estimated by normal-distribution-based maximum likelihood (NML), to regression analysis with (weighted) composites estimated by least squares (LS) in terms of their signal-to-noise ratio (SNR). They summarize their findings in the statement that “[c]ontrary to the common belief that CB-SEM is the preferred method for the analysis of observational data, this article shows that regression analysis via weighted composites yields parameter estimates with much smaller stan…
Asymptotics of correlation functions of the Heisenberg-Ising chain in the easy-axis regime
2016
We analyze the long-time large-distance asymptotics of the longitudinal correlation functions of the Heisenberg-Ising chain in the easy-axis regime. We show that in this regime the leading asymptotics of the dynamical two-point functions is entirely determined by the two-spinon contribution to their form factor expansion. Its explicit form is obtained from a saddle-point analysis of the corresponding double integral. It describes the propagation of a wave front with velocity $v_{c_1}$ which is found to be the maximal possible group velocity. Like in wave propagation in dispersive media the wave front is preceded by a precursor running ahead with velocity $v_{c_2}$. As a special case we obta…
Cluster Monte Carlo algorithms
1990
Abstract The Swendsen-Wang and Wolff Monte Carlo algorithms are described in some detail, using the Potts model as an example. Various generalizations are then reviewed and some applications are discussed. Two complete Fortran programs for the algorithms are provided.
Prokaryotic symbiotic consortia and the origin of nucleated cells: A critical review of Lynn Margulis hypothesis.
2021
The publication in the late 1960s of Lynn Margulis endosymbiotic proposal is a scientific milestone that brought to the fore of evolutionary discussions the issue of the origin of nucleated cells. Although it is true that the times were ripe, the timely publication of Lynn Margulis' original paper was the product of an intellectually bold 29-years old scientist, who based on the critical analysis of the available scientific information produced an all-encompassing, sophisticated narrative scheme on the origin of eukaryotic cells as a result of the evolution of prokaryotic consortia and, in bold intellectual stroke, put it all in the context of planetary evolution. A critical historical reas…
Estimating aggregated nutrient fluxes in four Finnish rivers via Gaussian state space models
2013
Reliable estimates of the nutrient fluxes carried by rivers from land-based sources to the sea are needed for efficient abatement of marine eutrophication. Although nutrient concentrations in rivers generally display large temporal variation, sampling and analysis for nutrients, unlike flow measurements, are rarely performed on a daily basis. The infrequent data calls for ways to reliably estimate the nutrient concentrations of the missing days. Here, we use the Gaussian state space models with daily water flow as a predictor variable to predict missing nutrient concentrations for four agriculturally impacted Finnish rivers. Via simulation of Gaussian state space models, we are able to esti…
Immune networks: multitasking capabilities near saturation
2013
Pattern-diluted associative networks were introduced recently as models for the immune system, with nodes representing T-lymphocytes and stored patterns representing signalling protocols between T- and B-lymphocytes. It was shown earlier that in the regime of extreme pattern dilution, a system with $N_T$ T-lymphocytes can manage a number $N_B!=!\order(N_T^\delta)$ of B-lymphocytes simultaneously, with $\delta!<!1$. Here we study this model in the extensive load regime $N_B!=!\alpha N_T$, with also a high degree of pattern dilution, in agreement with immunological findings. We use graph theory and statistical mechanical analysis based on replica methods to show that in the finite-connectivit…