Search results for "molecule"
showing 10 items of 5162 documents
Syntheses, crystal structures, and magnetic properties of metal-organic hybrid materials of Mn(II)/Co(II): three-fold interpenetrated alpha-polonium-…
2014
Three new 1,4-phenylenediacrylate bridged Mn(II) and Co(II) complexes of molecular formulas {[Mn2(ppda)(phen)4(H2O)2](ppda)2(H2O)} (1), {[Co(ppda)- (dpyo)(H2O)3]·4(H2O)}n (2), and {[Co(ppda)(bpe)]·(0.5H2O)}n (3) [ppda = 1,4- phenylenediacrylate; phen = 1,10-phenanthroline; dpyo = 4,4′-dipyridyl N,N′-dioxide; bpe = 1,2-bis(4-pyridyl)ethane] have been synthesized and characterized by elemental analysis, IR spectra, single-crystal X-ray diffraction studies, and low-temperature magnetic measurements. The structural determination reveals that complex 1 is a discrete dinuclear species, 2 is a 1D polymeric chain, while 3 is a three-fold interpenetrated α-polonium network. Hydrogen-bonding interact…
The kinetic MC modelling of reversible pattern formation in initial stages of thin metallic film growth on crystalline substrates
2003
Abstract The results of kinetic MC simulations of the reversible pattern formation during the adsorption of mobile metal atoms on crystalline substrates are discussed. Pattern formation, simulated for submonolayer metal coverage, is characterized in terms of the joint correlation functions for a spatial distribution of adsorbed atoms. A wide range of situations, from the almost irreversible to strongly reversible regimes, is simulated. We demonstrate that the patterns obtained are defined by a key dimensionless parameter: the ratio of the mutual attraction energy between atoms to the substrate temperature. Our ab initio calculations for the nearest Ag–Ag adsorbate atom interaction on an MgO…
Insights on the origin of catalysis on glycine N-methyltransferase from computational modeling.
2018
The origin of enzyme catalysis remains a question of debate despite much intense study. We report a QM/MM theoretical study of the SN2 methyl transfer reaction catalyzed by a glycine N-methyltransferase (GNMT) and three mutants to test whether recent experimental observations of rate-constant reductions and variations in inverse secondary α-3H kinetic isotope effects (KIEs) should be attributed to changes in the methyl donor−acceptor distance (DAD): is catalysis due to a compression effect? Semiempirical (AM1) and DFT (M06-2X) methods were used to describe the QM subset of atoms, while OPLS-AA and TIP3P classical force fields were used for the protein and water molecules, respectively. The …
Organic synthesis of high added value molecules with MOF catalysts
2020
Recent examples of organic synthesis of fine chemicals and pharmaceuticals in confined spaces of MOFs are highlighted and compared with silica-based ordered porous solids, such as zeolites or mesoporous (organo)silica. These heterogeneous catalysts offer the possibility of stabilizing the desired transition states and/or intermediates during organic transformations of functional groups and (C-C/C-N) bond forming steps towards the desired functional high added value molecular scaffolds. A short introduction on zeolites, mesoporous silica and metal-organic frameworks is followed by relevant applications in which confined active sites in the pores promote single or multi-step organic synthesis…
Revised Atomistic Models of the Crystal Structure of C–S–H with high C/S Ratio
2016
Abstract The atomic structure of calcium-silicate-hydrate (C1.67–S–H x ) has been studied. Atomistic C–S–H models suggested in our previous study have been revised in order to perform a direct comparison of energetic stability of the different structures. An extensive set of periodic structures of C–S–H with variation of water content was created, and then optimized using molecular dynamics with reactive force field ReaxFF and quantum chemical semiempirical method PM6. All models show organization of water molecules inside the structure of C–S–H. The new geometries of C–S–H, reported in this paper, show lower relative energy with respect to the geometries from the original definition of C–S…
Characterization of adsorbed water in MIL-53(Al) by FTIR spectroscopy and ab-initio calculations
2015
Here, we report ab-initio calculations developed with a twofold purpose: understand how adsorbed water molecules alter the infrared spectrum of the metal-organic framework MIL-53(Al) and to investigate which are the associated physico-chemical processes. The analyzed structures are the two anhydrous narrow (np⊘) and large (lp⊘) pore forms and the hydrated narrow pore form (np-H2O) of the MIL-53(Al). For these structures, we determined their corresponding infrared spectra (FTIR) and we identified the vibrational modes associated to the dominant spectral lines. We show that wagging and scissoring modes of CO2 give flexibility to the structure for facilitating the lp⊘- np⊘ transition. In our s…
Ab initio calculations on the molecular structure of fluorocyanopolyynes
1998
Abstract The molecular structure of the first three members of the fluorocyanopolyynes was studied by ab initio Hartree-Fock calculations with a polarized double zeta basis set and at MP2 level with the same basis set. Alternating triple and single bonds were found; a theoretical estimate of rotational constants and dipole moments was performed and a comparison with the available experimental data was made. An analysis of the theoretical vibrational frequencies of the title compounds was carried out.
Studies of structures and properties of polymeric systems containing bis-(hydroxy-arylidene)alkanones as NLO-active chromophores
2002
Abstract NLO-properties of polymer systems containing bis-(hydroxy-arylidene)alkanone chromophores were studied experimentally and analyzed using ab initio quantum chemical calculations. A monoclinic crystal structure (space group P2111) of the polyester containing fragments of such chromophores in the backbone was simulated and a reasonable agreement between the experimental and simulated X-ray powder diffraction patterns was achieved. Ab initio quantum-mechanical estimations of the SHG-observable macroscopic second-order non-linearity tensor coefficients, obtained for the polymer crystal structure at the HF SCF level, led to the major dXZZ-coefficient of 1.9 pm/V. Films of ionic complexes…
Molecular Dynamics Simulations of SFG Librational Modes Spectra of Water at the Water–Air Interface
2016
At the water–air interface, the hydrogen-bond network of water molecules is interrupted, and accordingly, the structure and dynamics of the interfacial water molecules are altered considerably compared with the bulk. Such interfacial water molecules have been studied by surface-specific vibrational sum-frequency generation (SFG) spectroscopy probing high-frequency O–H stretch and H–O–H bending modes. In contrast, the low-frequency librational mode has been much less studied with SFG. Because this mode is sensitive to the hydrogen-bond connectivity, understanding the librational mode of the interfacial water is crucial for unveiling a microscopic view of the interfacial water. Here, we compu…
Collisional line broadening and line shifting in N2-CO2 mixture studied by inverse Raman spectroscopy
1990
Abstract Collisional effects in the Raman Q-branch of N 2 perturbed by CO 2 have been studied by high-resolution stimulated Raman spectroscopy. The Raman spectra recorded in the 0.3–1.0 atm and 295–1000 K pressure and temperature ranges are fitted with a theoretical profile taking into account line broadening, frequency shift and line mixing due to rotational energy transfers. The data at low density are used as basic data for the modeling of rotationally inelastic rates through sets of adjustable parameters. We have used in this study the two main models developed in the last decade and known as modified exponential gap (MEG) and energy corrected sudden (ECS) laws. Experimental spectra rec…