Search results for "ocean"

showing 10 items of 2919 documents

Intestinal helminth fauna of the shortfin mako Isurus oxyrinchus (Elasmobranchii: Lamnidae) in the northeast Atlantic Ocean.

2017

Large oceanic sharks represent a suitable model to investigate the influence of a host's oceanic conditions on the structure of its helminth communities. In this study, we describe the intestinal helminth fauna, and investigate determinants of infracommunity structure, in 39 specimens of shortfin mako Isurus oxyrinchus collected in the NE Atlantic. Six cestode species were found in the spiral valve of makos: 3 are typical from lamnid sharks, namely, gravid specimens of Clistobothrium montaukensis, Gymnorhynchus isuri and Ceratobothrium xanthocephalum, and 3 are immature specimens of cestode species common to several elasmobranchs, namely, Dinobothrium septaria, Nybelinia lingualis, and Phyl…

0301 basic medicineIsurusbiologyEcologyFaunafungiPelagic zone030108 mycology & parasitologyAquatic Sciencebiology.organism_classification03 medical and health sciencesElasmobranchiiSpiral valveHelminthsLamnidaeSharksAnimalsSpecies richnessHelminthiasis AnimalAtlantic OceanEcology Evolution Behavior and SystematicsTrophic levelDiseases of aquatic organisms
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Anisakis infections in lantern fish (Myctophidae) from the Arabian Sea: A dual role for lantern fish in the life cycle of Anisakis brevispiculata?

2018

Abstract Data on geographic distribution and life cycles of parasitic nematodes of the genus Anisakis in tropical oceanic regions are extremely scarce. Myctophids (lantern fishes) are a key component of mesopelagic trophic webs and could play a significant role in the transmission of Anisakis spp. in these regions. We examined Anisakis infections in a sample of 160 myctophids collected in three localities from the Indian Exclusive Economic Zone (Arabian Sea) in 2015–16. Due to the poor condition of fish, a combination of morphological data and molecular barcoding was used to identify myctophids. Of the 104 specimens that could be identified at least to genus level, 75 (72.1%) were assigned …

0301 basic medicineLarvabiologyMesopelagic zoneZoologyKogiidae030108 mycology & parasitologyAquatic ScienceOceanographybiology.organism_classificationAnisakisPredation03 medical and health sciences030104 developmental biologyGenusDiaphusTrophic levelDeep Sea Research Part I: Oceanographic Research Papers
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Settlement performance of the Mediterranean reef-builders Dendropoma cristatum (Biondi 1859) in response to natural bacterial films.

2017

The gastropod Dendropoma cristatum is a biogenic engineer of the central Mediterranean, forming reefs along the lower rocky intertidal fringe with a remarkable ecological role. To understand whether reef-associated biofilm cultivable bacterial and biofilm ageing may trigger the settlement of the juvenile snails, a combination of laboratory techniques and field experiments was used. Reef-associated biofilm cultivable bacteria were isolated, and a settlement-choice experiment was performed in situ on artificial biofilms composed of i) a mixture of six biofilm-forming selected isolates, ii) all the cultivable bacteria, and iii) 13-, 23-, 32-day old biofilms formed under natural conditions. Ove…

0301 basic medicineMediterranean climateGastropodaIntertidal zoneAquatic ScienceOceanography03 medical and health sciencesMediterranean seaAnimalsReefEcosystemgeographygeography.geographical_feature_categorybiologyBacteriaEcologytechnology industry and agricultureBiofilmDendropomasocial sciencesGeneral Medicinebiochemical phenomena metabolism and nutritionbiology.organism_classificationPollution030104 developmental biologyBiofilmspopulation characteristicsVermetidaeBacteriaEnvironmental MonitoringMarine environmental research
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Photoferrotrophy: Remains of an Ancient Photosynthesis in Modern Environments

2017

Photoferrotrophy, the process by which inorganic carbon is fixed into organic matter using light as an energy source and reduced iron [Fe(II)] as an electron donor, has been proposed as one of the oldest photoautotrophic metabolisms on Earth. Under the iron-rich (ferruginous) but sulfide poor conditions dominating the Archean ocean, this type of metabolism could have accounted for most of the primary production in the photic zone. Here we review the current knowledge of biogeochemical, microbial and phylogenetic aspects of photoferrotrophy, and evaluate the ecological significance of this process in ancient and modern environments. From the ferruginous conditions that prevailed during most …

0301 basic medicineMicrobiology (medical)Biogeochemical cycle030106 microbiologyReviewChemoclineMicrobiology03 medical and health sciencesferruginous conditionsevolutionPhotic zone14. Life underwaterArchean oceanPrimary producersbiologyphotoferrotrophyEcologyBiosphereBiogeochemistryiron-rich meromictic lakes15. Life on landbiology.organism_classification030104 developmental biology13. Climate actionGreen sulfur bacteriaEnvironmental scienceanoxygenic phototrophsEnergy sourceFrontiers in Microbiology
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First confirmed record ofMolasp. A in the western Mediterranean Sea: morphological, molecular and parasitological findings

2017

Recent molecular and morphological studies suggest the existence of at least three species of Mola (Mola spp. A, B and C). Currently, only Mola mola and Mola ramsayi are formally accepted and species A, B or C have not been assigned to these thus far. In this study, a large ocean sunfish in the western Mediterranean Sea was analysed molecularly and morphologically, identified as Mola sp. A and a detailed account of the specimen's parasite load is reported.

0301 basic medicineMorphometricsbiologyEcologyOcean sunfishMola ramsayiAquatic Sciencebiology.organism_classification03 medical and health sciences030104 developmental biologyD-loopMediterranean seaMolaEcology Evolution Behavior and SystematicsJournal of Fish Biology
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Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim

2021

24 páginas, 3 figuras, 1 tabla. The sequence data generated by this study has been deposited on SRA (https://www.ncbi.nlm.nih.gov/sra) under the accession number PRJNA670836. Extended data is available here: https://github.com/fmenardo/MTBC_L1_L3. DOI: https://doi.org/10.5281/zenodo.4609804 (Menardo, 2021).

0301 basic medicineMycobacterium tuberculosis / patogenicidadeTuberculosisGenotypevirusesLineage (evolution)030106 microbiologyLocus (genetics)adaptationBiologyGenomeGeneral Biochemistry Genetics and Molecular BiologyMycobacterium tuberculosis03 medical and health sciencesAdapta??oGenoma BacterianomedicineHumansOceano ?ndico / epidemiologiaGeneral Pharmacology Toxicology and PharmaceuticsAdaptationIndian OceanLocal adaptationGenetic diversityGeneral Immunology and Microbiologyvirus diseasesTuberculose / patologiaGeneral MedicineArticlesMycobacterium tuberculosisbiochemical phenomena metabolism and nutritionbiology.organism_classificationmedicine.diseasedigestive system diseases3. Good health030104 developmental biologyMycobacterium tuberculosis complexEvolutionary biologycoevolutionLinhagemCoevolutionResearch ArticleF1000Research
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Assessing the effect of mercury pollution on cultured benthic foraminifera community using morphological and eDNA metabarcoding approaches

2018

Mercury (Hg) is a highly toxic element for living organisms and is known to bioaccumulate and biomagnify. Here, we analyze the response of benthic foraminifera communities cultured in mesocosm and exposed to different concentrations of Hg. Standard morphological analyses and environmental DNA metabarcoding show evidence that Hg pollution has detrimental effects on benthic foraminifera. The molecular analysis provides a more complete view of foraminiferal communities including the soft-walled single-chambered monothalamiids and small-sized hard-shelled rotaliids and textulariids than the morphological one. Among these taxa that are typically overlooked in morphological studies we found poten…

0301 basic medicinePollutionmercury pollutionGeologic Sedimentsmedia_common.quotation_subjectbenthic foraminiferaBenthic foraminifera Biomonitoring Mercury pollution MetabarcodingForaminifera010501 environmental sciencesAquatic ScienceOceanography01 natural sciencesMesocosmForaminifera03 medical and health sciencesBiomonitoringMediterranean SeaDNA Barcoding TaxonomicEnvironmental DNASeawatermetabarcoding biomonitoring0105 earth and related environmental sciencesmedia_commonbiologyEcologyBenthic foraminiferaBiodiversityMercuryDNA ProtozoanMercury pollutionbiology.organism_classificationPollutionBenthic foraminifera; Biomonitoring; Mercury pollution; Metabarcoding030104 developmental biologyItaly13. Climate actionBenthic zoneBioaccumulationbenthic foraminifera; mercury pollution; metabarcoding biomonitoringBiomonitoringMetabarcodingBioindicatorWater Pollutants ChemicalEnvironmental Monitoring
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Evolution of Hemoglobin Genes in Codfishes Influenced by Ocean Depth

2017

AbstractUnderstanding the genetic basis of adaptation is one of the main enigmas of evolutionary biology. Among vertebrates, hemoglobin has been well documented as a key trait for adaptation to different environments. Here, we investigate the role of hemoglobins in adaptation to ocean depth in the diverse teleost order Gadiformes, with species distributed at a wide range of depths varying in temperature, hydrostatic pressure and oxygen levels. Using genomic data we characterized the full hemoglobin (Hb) gene repertoire for subset of species within this lineage. We discovered a correlation between expanded numbers of Hb genes and ocean depth, with the highest numbers in species occupying sha…

0301 basic medicineRange (biology)Lineage (evolution)Oceans and SeasScienceHydrostatic pressureAdaptation BiologicalZoologyBiologyArticleEvolution Molecular03 medical and health sciencesHemoglobinsPhylogeneticsHydrostatic PressureAnimalsSelection GeneticGenePhylogenyWhole genome sequencingMultidisciplinaryWhole Genome SequencingGadiformesQTemperatureRbiology.organism_classificationOxygenGadiformes030104 developmental biologyMedicineAdaptation
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Induction of skeletal abnormalities and autophagy in Paracentrotus lividus sea urchin embryos exposed to gadolinium.

2017

Abstract Gadolinium (Gd) concentration is constantly increasing in the aquatic environment, becoming an emergent environmental pollutant. We investigated the effects of Gd on Paracentrotus lividus sea urchin embryos, focusing on skeletogenesis and autophagy. We observed a delay of biomineral deposition at 24 hours post fertilization (hpf), and a strong impairment of skeleton growth at 48 hpf, frequently displayed by an asymmetrical pattern. Skeleton growth was found partially resumed in recovery experiments. The mesodermal cells designated to biomineralization were found correctly migrated at 24 hpf, but not at 48 hpf. Western blot analysis showed an increase of the LC3-II autophagic marker…

0301 basic medicineSea urchinWater Pollutants Radioactiveanimal structuresEmbryo NonmammalianMorphogenesisGadolinium010501 environmental sciencesAquatic ScienceEcotoxicologyOceanography01 natural sciencesParacentrotus lividuslaw.inventionEnvironmental impact03 medical and health sciencesDevelopmental abnormalityWestern blotConfocal microscopylawbiology.animalmedicineAutophagyAnimalsSettore BIO/06 - Anatomia Comparata E CitologiaSea urchin0105 earth and related environmental sciencesbiologymedicine.diagnostic_testMetalfungiAutophagyEmbryoGeneral MedicineAnatomybiology.organism_classificationSkeleton (computer programming)PollutionCell biology030104 developmental biologySkeletogenesiMedical drugEmbryoembryonic structuresParacentrotusMarine environmental research
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Bacterial community structure along the subtidal sandy sediment belt of a high Arctic fjord (Kongsfjorden, Svalbard Islands)

2018

Open fjords are subject to contrasting environmental conditions, owing to meltwater glacial inputs, terrestrial runoff, and marine water mass exchanges, which are exacerbated by anthropogenic and climate perturbations. Following a slope-dependent water circulation, the subtidal sandy sediment belt regulates the convergent transport of nutrients downward the fjord depths, and the effective entrapment of suspended particles and microorganisms. In this study, we aimed at testing how glacial and seawater inputs may influence the bacterial community structure of subtidal sand deposits in the Kongsfjorden. Through total and viable cell counting and an amplicon sequencing approach, we found releva…

0301 basic medicineWater massEnvironmental EngineeringFjordmicrobial community compositioncoastal sands03 medical and health sciencesEnvironmental Chemistryta219Glacial periodMeltwaterglacial inputsWaste Management and Disposalgeographygeography.geographical_feature_categoryCommunityion PGM sequencingCommunity structureSedimentGlacierPollution030104 developmental biologyOceanographyCoastal sands Glacial inputs Ion PGM sequencing Microbial community composition Prokaryotic abundance Environmental Engineering Environmental Chemistry Waste Management and Disposal PollutionGeologyprokaryotic abundanceScience of the Total Environment
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