Search results for "oftware"

Protein data condensation for effective quaternary structure classification

2007

Many proteins are composed of two or more subunits, each associated with different polypeptide chains. The number and the arrangement of subunits forming a protein are referred to as quaternary structure. The quaternary structure of a protein is important, since it characterizes the biological function of the protein when it is involved in specific biological processes. Unfortunately, quaternary structures are not trivially deducible from protein amino acid sequences. In this work, we propose a protein quaternary structure classification method exploiting the functional domain composition of proteins. It is based on a nearest neighbor condensation technique in order to reduce both the porti…

Convolutional Neural Networks for the Identification of Regions of Interest in PET Scans: A Study of Representation Learning for Diagnosing Alzheimer…

2017

When diagnosing patients suffering from dementia based on imaging data like PET scans, the identification of suitable predictive regions of interest (ROIs) is of great importance. We present a case study of 3-D Convolutional Neural Networks (CNNs) for the detection of ROIs in this context, just using voxel data, without any knowledge given a priori. Our results on data from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) suggest that the predictive performance of the method is on par with that of state-of-the-art methods, with the additional benefit of potential insights into affected brain regions.

A convolutional neural network framework for blind mesh visual quality assessment

2017

In this paper, we propose a new method for blind mesh visual quality assessment using a deep learning approach. To do this, we first extract visual representative features by computing locally curvature and dihedral angles from each distorted mesh. Then, we determine from these features a set of 2D patches which are learned to a convolutional neural network (CNN). The network consists of two convolutional layers with two max-pooling layers. Then, a multilayer perceptron (MLP) with two fully connected layers is integrated to summarize the learned representation into an output node. With this network structure, feature learning and regression are used to predict the quality score of a given d…

2020

Abstract Background and objective Deep learning approaches are common in image processing, but often rely on supervised learning, which requires a large volume of training images, usually accompanied by hand-crafted labels. As labelled data are often not available, it would be desirable to develop methods that allow such data to be compiled automatically. In this study, we used a Generative Adversarial Network (GAN) to generate realistic B-mode musculoskeletal ultrasound images, and tested the suitability of two automated labelling approaches. Methods We used a model including two GANs each trained to transfer an image from one domain to another. The two inputs were a set of 100 longitudina…

Towards Advanced Visualisation Techniques in Case

1999

The complexity of information systems has resulted in more sophisticated CASE tools which integrate multifaceted design information using metamodeling and hypertext technologies. A designer can use this vast amount of tightly coupled information efficiently only if it is presented based on his needs and cognitive capabilities. In this paper we discuss how representations in CASE can be improved using advanced visualisation techniques.

The Detector Control of the PANDA Experiment

2014

The PANDA experiment will be built at the antiproton storage ring HESR, a part of the new accelerator facility FAIR in Darmstadt, Germany. PANDA aims amongst other topics for high precision measurements in hadron spectroscopy and search for exotic matter. To guarantee the high resolution of the different components a detector control system (DCS) monitoring temperatures, humidity, pressure, and controlling chillers and power supplies is needed. The DCS of PANDA is built using the open-source software package EPICS (Experimental Physics and Industrial Control System) with a PANDA specific version of Control-System Studio. In this document the general concepts of the PANDA DCS will be discuss…

Feature selection using support vector machines and bootstrap methods for ventricular fibrillation detection

2012

Early detection of ventricular fibrillation (VF) is crucial for the success of the defibrillation therapy in automatic devices. A high number of detectors have been proposed based on temporal, spectral, and time-frequency parameters extracted from the surface electrocardiogram (ECG), showing always a limited performance. The combination ECG parameters on different domain (time, frequency, and time-frequency) using machine learning algorithms has been used to improve detection efficiency. However, the potential utilization of a wide number of parameters benefiting machine learning schemes has raised the need of efficient feature selection (FS) procedures. In this study, we propose a novel FS…

BioImageXD - Free Microscopy Image Processing Software

2008

Extended abstract of a paper presented at Microscopy and Microanalysis 2008 in Albuquerque, New Mexico, USA, August 3 – August 7, 2008

Local Feature Selection with Dynamic Integration of Classifiers

2000

Multidimensional data is often feature space heterogeneous so that individual features have unequal importance in different sub areas of the feature space. This motivates to search for a technique that provides a strategic splitting of the instance space being able to identify the best subset of features for each instance to be classified. Our technique applies the wrapper approach where a classification algorithm is used as an evaluation function to differentiate between different feature subsets. In order to make the feature selection local, we apply the recent technique for dynamic integration of classifiers. This allows to determine which classifier and which feature subset should be us…

M-GRASP: A GRASP With Memory for Latency-Aware Partitioning Methods in DVE Systems

2009

A necessary condition for providing quality of service to distributed virtual environments (DVEs) is to provide a system response below a maximum threshold to the client computers. In this sense, latency-aware partitioning methods try to provide response times below the threshold to the maximum number of client computers as possible. These partitioning methods should find an assignment of clients to servers that optimizes system throughput, system latency, and partitioning efficiency. In this paper, we present a new algorithm based on greedy randomized adaptive search procedure with memory for finding the best solutions as possible to this problem. We take into account several different alt…