Search results for "omics"
showing 10 items of 17130 documents
Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans.
2010
Sponges (Porifera) are among the simplest living and the earliest branching metazoans. They hold a pivotal role for studying genome evolution of the entire metazoan branch, both as an outgroup to Eumetazoa and as the closest branching phylum to the common ancestor of all multicellular animals (Urmetazoa). In order to assess the transcription inventory of sponges, we sequenced expressed sequence tag libraries of two demosponge species, Suberites domuncula and Lubomirskia baicalensis, and systematically analyzed the assembled sponge transcripts against their homologs from complete proteomes of six well-characterized metazoans--Nematostella vectensis, Caenorhabditis elegans, Drosophila melanog…
The Recent non-marine ostracods of Tunisia: an updated checklist with remarks on their regional distribution patterns and ecological preferences
2020
Different lines of investigation have recently contributed to increasing the available knowledge about the invertebrates inhabiting inland waters of north Africa, but a comprehensive synopsis on Tunisian Ostracoda is missing to date. An updated checklist of Recent non-marine ostracods from Tunisia and data on their distribution is thus offered here, representing the most extensive survey on this crustacean group ever carried out in inland waters throughout the country. One-hundred-five sites covering various climate zones, from Mediterranean to desert areas, were sampled between 2002 and 2012. Most of the considered water bodies were temporary or ephemeral habitats, but a few permanent site…
Genomic variation in tomato, from wild ancestors to contemporary breeding accessions
2015
[EN] Background: Domestication modifies the genomic variation of species. Quantifying this variation provides insights into the domestication process, facilitates the management of resources used by breeders and germplasm centers, and enables the design of experiments to associate traits with genes. We described and analyzed the genetic diversity of 1,008 tomato accessions including Solanum lycopersicum var. lycopersicum (SLL), S. lycopersicum var. cerasiforme (SLC), and S. pimpinellifolium (SP) that were genotyped using 7,720 SNPs. Additionally, we explored the allelic frequency of six loci affecting fruit weight and shape to infer patterns of selection. Results: Our results revealed a pat…
Acting locally - affecting globally: RNA sequencing of gilthead sea bream with a mild Sparicotyle chrysophrii infection reveals effects on apoptosis,…
2019
[Background] Monogenean flatworms are the main fish ectoparasites inflicting serious economic losses in aquaculture. The polyopisthocotylean Sparicotyle chrysophrii parasitizes the gills of gilthead sea bream (GSB, Sparus aurata) causing anaemia, lamellae fusion and sloughing of epithelial cells, with the consequent hypoxia, emaciation, lethargy and mortality. Currently no preventive or curative measures against this disease exist and therefore information on the host-parasite interaction is crucial to find mitigation solutions for sparicotylosis. The knowledge about gene regulation in monogenean-host models mostly comes from freshwater monopysthocotyleans and almost nothing is known about …
Antibiotics accelerate growth at the expense of immunity
2021
Antibiotics have long been used in the raising of animals for agricultural, industrial or laboratory use. The use of subtherapeutic doses in diets of terrestrial and aquatic animals to promote growth is common and highly debated. Despite their vast application in animal husbandry, knowledge about the mechanisms behind growth promotion is minimal, particularly at the molecular level. Evidence from evolutionary research shows that immunocompetence is resource-limited, and hence expected to trade off with other resource-demanding processes, such as growth. Here, we ask if accelerated growth caused by antibiotics can be explained by genome-wide trade-offs between growth and costly immunocompete…
Precision, Applicability, and Economic Implications: A Comparison of Alternative Biodiversity Offset Indexes
2021
AbstractThe rates of ecosystem degradation and biodiversity loss are alarming and current conservation efforts are not sufficient to stop them. The need for new tools is urgent. One approach is biodiversity offsetting: a developer causing habitat degradation provides an improvement in biodiversity so that the lost ecological value is compensated for. Accurate and ecologically meaningful measurement of losses and estimation of gains are essential in reaching the no net loss goal or any other desired outcome of biodiversity offsetting. The chosen calculation method strongly influences biodiversity outcomes. We compare a multiplicative method, which is based on a habitat condition index develo…
Modelling the European Farmland Bird Indicator in response to forecast land-use change in Europe
2011
International audience; The European Farmland Bird Indicator (EFBI) has been adopted as a Structural and Sustainable Development Indicator by the European Union. It is an aggregated index integrating the population trends of 33 common bird species associated with farmland habitats across 21 countries. We describe a modelling method for predicting this indicator from land-use characteristics. Using yearly historical land-use data of crop areas derived from the FAO databases (1990–2007) and published population data of farmland birds at the national level for the same period, we developed a series of multiple regression models to predict the trend of the EU state specific indicator, and the E…
Integrating data from multiple surveys and accounting for spatio-temporal correlation to index the abundance of juvenile Pacific halibut in Alaska
2017
Abstract Survey indices of abundance are one of the main sources of information used in fish stock assessment. Many regions around the world, including the United States and Europe, develop survey protocols to aid in creating these indices. As ecosystems function as a continuum across borders, there is a need to develop a standardized framework for combining information across surveys. Such methods could help resolve differences in timing, spatial coverage, catchability, and selectivity among surveys. We present a method that uses survey data by length class. These data come from several regional surveys each with differing sampling designs, spatial and temporal coverage, and sampling gear.…
Cost-effective forest conservation and criteria for potential conservation targets: a Finnish case study
2008
International audience; Selecting reserves for forest biodiversity maintenance is often done by setting criteria for components of structural elements of biodiversity, such as a volume of decaying wood. We tested how the different threshold values for the components of structural elements affect the cost-effective site selection. Using Finnish National Forest Inventory information and remote sensing data, we determined a habitat quality index and economic value for each site in Satakunta region in Finland. Moreover, we defined several sets of potential conservation targets using alternative criteria for the habitat quality index developed for the Finnish case study. These figures were used …
Are alternative food networks winning strategies to increase organic SMEs profitability? Evidence from a case study
2020
The aim of this study was to understand how and how much alternative food networks (AFNs) contribute to increasing the profitability of the organic SMEs, compared to traditional organic sales channels. For this purpose, an economic analysis and an in-depth interview were carried out in a case study located in the Sicilian northern coast. Findings showed a clear convenience of the participation to alternative food networks compared to the case in which all farm production was conferred to traditional sales channels, highlighting an increase both of farm profit (+76.9%) and net income (+72.1%). However, the in-depth interview revealed that AFNs are a mean, not only to have economic benefits, …