Search results for "omics"
showing 10 items of 17130 documents
Modeling the distribution of thorny skate (Amblyraja radiata) in the southern Grand Banks (Newfoundland, Canada)
2019
Globally, commercial fisheries have had a strong impact on elasmobranch populations directly through high catch rates and indirectly through bycatch. Consequently, the abundance of many species is declining to the extent that some are considered under threat of extinction. Regionally, this negative trend is also evident in the international waters of the southern Grand Banks (off the coast of Newfoundland, Canada), where the occurrence of the thorny skate (Amblyraja radiata) has declined by nearly 70% in recent decades. This study used Bayesian species distribution models to investigate the habitat preference and biomass trends of the thorny skate during a 14-year period (2003–2017), linki…
Consumer preferences for fig fruit (Ficus carica L.) quality attributes and postharvest storage at low temperature by in-store survey and focus group
2017
Fig (Ficus carica L.) is cultivated mainly in southern Italy and in several countries of the Mediterranean area. According to official statistics the quantities of fresh fig placed on domestic market are low, though the home consumption is known to be relatively high in summer. The objective of this study was to discover consumers’ preferences for sensory, quality attributes of fresh fig and primary drivers of liking, in order to enhance fruit marketing value. An in-store consumer test and two focus groups were carried out to assess preferences in regards to fresh figs after 3 and 7 days of storage at low temperature: the selected sensory, intrinsic and extrinsic attributes were ranked by c…
Human-Bat Interactions in Rural Southwestern Madagascar through a Biocultural Lens
2021
Human-bat interactions are common in rural areas across the tropics. Over 40 bat species occur in Madagascar, most of which are endemic. Forest loss is changing the distribution of bats throughout the island, with potential increases in both the abundance of synanthropic species and human-bat interactions. We set out to study knowledge of, interactions with, and attitudes towards bats in rural Madagascar, including reports of food and ethnomedicinal uses of bats, their cultural representations in folklore, and the existence of culturally enforced taboos in relation to them. We administered 108 surveys with open- and closed-ended questions with adults from the Tanala and Betsileo ethnic grou…
Assessing the indirect and long-term ecological impacts of innovation in agriculture is a real challenge: the GM example
2003
All innovation in agriculture constitutes a significant and complex ecological disturbance, even if limited to a single and simple action. Indeed, whatever the nature and objective of the action, a large number of ecological processes are affected and numerous discontinuities may occur within the agro-ecosystem, in both time and space. As the GMO example illustrates, it is not sufficient to focus on direct effect of innovation, it is necessary to forecast mid- and long-term impacts of innovation with respect to the environment. Modelling phenomena appear then to be a key element to achieve this goal.
Climate Change and Migration for Scandinavian Saami: A Review of Possible Impacts
2019
Migration, especially of indigenous peoples, related to or influenced by climate change continues to gain increasing research and policy attention. Limited material remains for this topic for Scandinavia&rsquo
Drosophila Evolution over Space and Time (DEST) : A New Population Genomics Resource
2021
Drosophila melanogaster is a leading model in population genetics and genomics, and a growing number of whole-genome datasets from natural populations of this species have been published over the last years. A major challenge is the integration of disparate datasets, often generated using different sequencing technologies and bioinformatic pipelines, which hampers our ability to address questions about the evolution of this species. Here we address these issues by developing a bioinformatics pipeline that maps pooled sequencing (Pool-Seq) reads from D. melanogaster to a hologenome consisting of fly and symbiont genomes and estimates allele frequencies using either a heuristic (PoolSNP) or a…
Mixed company : a framework for understanding the composition and organization of mixed‐species animal groups
2020
Mixed‐species animal groups (MSGs) are widely acknowledged to increase predator avoidance and foraging efficiency, among other benefits, and thereby increase participants' fitness. Diversity in MSG composition ranges from two to 70 species of very similar or completely different phenotypes. Yet consistency in organization is also observable in that one or a few species usually have disproportionate importance for MSG formation and/or maintenance. We propose a two‐dimensional framework for understanding this diversity and consistency, concentrating on the types of interactions possible between two individuals, usually of different species. One axis represents the similarity of benefit types …
An annotated checklist of the leech (Annelida: Hirudinida) species of the Moulouya River basin, Morocco, with several new distribution records and a …
2019
A historical overview of the leech fauna of Morocco, based on both literature data, museum collections and new material, sampled in more than 100 sites in the Moulouya River basin (eastern region of Morocco), is provided. Twenty species from five families and ten genera are currently known, of which Helobdella europea Kutschera, 1987, is a new record for the country and North Africa as a whole. Herein, we add many new distribution records. The current list will need to be revised as new species distributions are recorded in the region. Notes on the species distribution are given along with comments on their habitat preferences. A concise biogeographic analysis outlines the similarities in t…
A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
2020
ABSTRACT Background Diploid genome assembly is typically impeded by heterozygosity because it introduces errors when haplotypes are collapsed into a consensus sequence. Trio binning offers an innovative solution that exploits heterozygosity for assembly. Short, parental reads are used to assign parental origin to long reads from their F1 offspring before assembly, enabling complete haplotype resolution. Trio binning could therefore provide an effective strategy for assembling highly heterozygous genomes, which are traditionally problematic, such as insect genomes. This includes the wood tiger moth (Arctia plantaginis), which is an evolutionary study system for warning colour polymorphism. F…
Update in unified terroir zoning methodologies
2018
International audience; The concept of terroir is based on the assumption that the quality and the typicity of an agricultural product are linked to its origin. The precise definition of an origin requires zoning. Because terroir expression in viticulture is largely driven by interactions between the vine and its natural environment, soil and climate play a key role in terroir zoning. For clarity, soil-based and climate-based zoning are presented separately in this paper. They are, however, ideally carried out simultaneously, because of the existence of multiple interactions between these terroir factors. Prior to the implementation of zoning, the objectives need to be carefully defined. Th…