Search results for "parallel"
showing 10 items of 667 documents
RabbitMash: accelerating hash-based genome analysis on modern multi-core architectures
2020
Abstract Motivation Mash is a popular hash-based genome analysis toolkit with applications to important downstream analyses tasks such as clustering and assembly. However, Mash is currently not able to fully exploit the capabilities of modern multi-core architectures, which in turn leads to high runtimes for large-scale genomic datasets. Results We present RabbitMash, an efficient highly optimized implementation of Mash which can take full advantage of modern hardware including multi-threading, vectorization and fast I/O. We show that our approach achieves speedups of at least 1.3, 9.8, 8.5 and 4.4 compared to Mash for the operations sketch, dist, triangle and screen, respectively. Furtherm…
Integrable Hamiltonian systems with swallowtails
2010
International audience; We consider two-degree-of-freedom integrable Hamiltonian systems with bifurcation diagrams containing swallowtail structures. The global properties of the action coordinates in such systems together with the parallel transport of the period lattice and corresponding quantum cells in the joint spectrum are described in detail. The relation to the concept of bidromy which was introduced in Sadovski´ı and Zhilinski´ı (2007 Ann. Phys. 322 164–200) is discussed.
Noncovalent assembly of functional groups on calix[4]arene molecular boxes
1997
Calix[4]arenes diametrically substituted at the upper rim with two melamine units spontaneously form well-defined box-like assemblies in the presence of two equivalents of 5,5-diethylbarbituric acid. These assemblies, consisting of nine different components, are held together by 36 hydrogen bonds and are stable in apolar solvents at concentrations of up to 10-4M. This paper reports the first X-ray crystal structure, and the MALDI TOF mass spectra together with the complete 1H NMR spectroscopic characterization of these hydrogen-bonded assemblies. The crystal structure clearly shows that the assemblies are stereogenic, as a result of the antiparallel orientation of the two rosette motifs. Fu…
Reflections towards a generative theory of musical parallelism
2010
Parallelism plays a core role in Lerdahl and Jackendoff's (1983) GTTM, as it rules the emergence of motivic, metrical, grouping and even formal structures. Due to the high amount of detail and complexity characterising associational structures, neither explicit model nor systematic methodology of parallelism-based structural inference has been included into the GTTM. This paper develops a methodological and computational answer to this problem founded on a computational modelling of pattern extraction operations. The paper focuses in particular on the methodological interest of the pattern mining formalism, and in particular its application to the formalisation of grouping and metrical str…
Analysis of the influence of processor hidden registers on the accuracy of fault injection techniques
2004
Modern processors tend to increase the number of registers, being part of them not accessible by the instruction set. Traditionally, the effect of faults in these hidden registers has not been considered during system validation using fault injection. In this paper, a study of the importance of faults in hidden registers is performed. Firstly, we have analysed the sensitivity of hidden registers to faults in combinational logic. In a second phase, we have analysed the impact of the faults occurred in hidden registers on system behaviour. A broad set of permanent and transient faults have been injected into the models of two typical commercial microcontrollers, using a VHDL-based fault injec…
Tésera celtibérica con “lobo cenital” procedente de Burgos
2018
Se presenta aquí una nueva tésera de hospitalidad celtibérica de bronce en forma de lobo en perspectiva cenital. No se sabe con seguridad el lugar de hallazgo de la pieza, pero parece proceder de la provincia de Burgos, lo que parece confirmar su análisis estilístico. Aunque la autenticidad del documento es, por tanto, problemática, sin duda la pieza merece al menos ser objeto del conocimiento por parte de la comunidad científica en razón de su texto celtibérico, useitio : magoniocum : car, y su sugerente iconografía, que pudiera relacionarse con un mito celta del final del mundo, conocido como el mito del “Lobo que devora al Sol” documentado en diversas monedas celtas y en la mitología ge…
Algorithms for the calculation of the view factors between human body and rectangular surfaces in parallelepiped environments
1992
Abstract The thermal comfort conditions for people in moderate thermal environments are subjected to spatial changes, depending on the radiative exchanges of the human body with the surrounding surfaces. Radiative thermal exchanges are notably accounted for by means of the “view factors” between a person in a given posture and the surface of the enclosure. These important parameters can be evaluated by means of a large set of graphs by Fanger, for rectangular surfaces. But the handling of graphs could lead to reading errors. In this paper a simple algorithm is presented, which is able to compute the required view factors. A validation, by means of a comparison against experimental data, is …
Symmetry of minimizers with a level surface parallel to the boundary
2015
We consider the functional $$I_\Omega(v) = \int_\Omega [f(|Dv|) - v] dx,$$ where $\Omega$ is a bounded domain and $f$ is a convex function. Under general assumptions on $f$, G. Crasta [Cr1] has shown that if $I_\Omega$ admits a minimizer in $W_0^{1,1}(\Omega)$ depending only on the distance from the boundary of $\Omega$, then $\Omega$ must be a ball. With some restrictions on $f$, we prove that spherical symmetry can be obtained only by assuming that the minimizer has one level surface parallel to the boundary (i.e. it has only a level surface in common with the distance). We then discuss how these results extend to more general settings, in particular to functionals that are not differenti…
Parallel Computing for the study of the focusing Davey-Stewartson II equation in semiclassical limit
2012
The asymptotic description of the semiclassical limit of nonlinear Schrödinger equations is a major challenge with so far only scattered results in 1 + 1 dimensions. In this limit, solutions to the NLS equations can have zones of rapid modulated oscillations or blow up. We numerically study in this work the Davey-Stewartson system, a 2 + 1 dimensional nonlinear Schrödinger equation with a nonlocal term, by using parallel computing. This leads to the first results on the semiclassical limit for the Davey-Stewartson equations.
Optimal Configuration for N-Dimensional Twin Torus Networks
2014
Torus topology is one of the most common topologies used in the current largest supercomputers. Although 3D torus is widely used, recently some supercomputers in the Top500 list have been built using networks with topologies of five or six dimensions. To obtain an nD torus, 2n ports per node are needed. These ports can be offered by a single or several cards per node. In the second case, there are multiple ways of assigning the dimension and direction of the card ports. In a previous work we proposed the 3D Twin (3DT) torus which uses two 4-port cards per node, and obtained the optimal port configuration. This paper extends and generalizes that work in order to obtain the optimal port confi…