Search results for "pattern"
showing 10 items of 4203 documents
A Tutorial on Computational Cluster Analysis with Applications to Pattern Discovery in Microarray Data
2008
Background Inferring cluster structure in microarray datasets is a fundamental task for the so-called -omic sciences. It is also a fundamental question in Statistics, Data Analysis and Classification, in particular with regard to the prediction of the number of clusters in a dataset, usually established via internal validation measures. Despite the wealth of internal measures available in the literature, new ones have been recently proposed, some of them specifically for microarray data. Results We consider five such measures: Clest, Consensus (Consensus Clustering), FOM (Figure of Merit), Gap (Gap Statistics) and ME (Model Explorer), in addition to the classic WCSS (Within Cluster Sum-of-S…
Automatic Biological Cell Counting Using a Modified Gradient Hough Transform
2017
AbstractWe present a computational method for pseudo-circular object detection and quantitative characterization in digital images, using the gradient accumulation matrix as a basic tool. This Gradient Accumulation Transform (GAT) was first introduced in 1992 by Kierkegaard and recently used by Kaytanli & Valentine. In the present article, we modify the approach by using the phase coding studied by Cicconet, and by adding a “local contributor list” (LCL) as well as a “used contributor matrix” (UCM), which allow for accurate peak detection and exploitation. These changes help make the GAT algorithm a robust and precise method to automatically detect pseudo-circular objects in a microscop…
Identification of Shigella sonnei biotype g isolates carrying class 2 integrons in Italy in 2001-2003
2005
ABSTRACT Phenotyping and genotyping have been carried out on 64 epidemic and sporadic isolates of Shigella sonnei identified in Italy in the years 2001 to 2003. Class 2 integron carriage has been also investigated. Isolates from four of the five outbreaks and four of six sporadic cases were biotype g , pulsed-field gel electrophoresis type B, and class 2 integron positive, suggesting emergence and spread of an epidemic clone in Italy.
Toward fast malaria detection by secondary speckle sensing microscopy
2012
Diagnosis of malaria must be rapid, accurate, simple to use, portable and low cost, as suggested by the World Health Organization (WHO). Despite recent efforts, the gold standard remains the light microscopy of a stained blood film. This method can detect low parasitemia and identify different species of Plasmodium. However, it is time consuming, it requires well trained microscopist and good instrumentation to minimize misinterpretation, thus the costs are considerable. Moreover, the equipment cannot be easily transported and installed. In this paper we propose a new technique named "secondary speckle sensing microscopy" ((SM)-M-3) based upon extraction of correlation based statistics of s…
A microscope configuration for nanometer 3-D movement monitoring accuracy.
2011
In this paper we present a new microscopy configuration based upon temporal tracking of a secondary reflected speckle by imaging the speckle through properly defocused optics. The configuration is used to monitor three-dimensional (3-D) spontaneous contraction of rat cardiac muscle cells while achieving nanometer tracking accuracy at a rate of 30 frames per second (fps) without using interferometric recording. Estimation of the change in the optical path of accuracy of 50 nm in the transverse direction and of 200 nm in the axial direction was achieved.
Novel image processing approach to detect malaria
2015
In this paper we present a novel image processing algorithm providing good preliminary capabilities for in vitro detection of malaria. The proposed concept is based upon analysis of the temporal variation of each pixel. Changes in dark pixels mean that inter cellular activity happened, indicating the presence of the malaria parasite inside the cell. Preliminary experimental results involving analysis of red blood cells being either healthy or infected with malaria parasites, validated the potential benefit of the proposed numerical approach. S.F. acknowledges the grant from Area Science Park of Trieste. J.G. acknowledges the support he got from project FIS2013-47548-P. D.M. and B.F. acknowl…
Comparison of perceptually uniform quantisation with average error minimisation in image transform coding
1999
An alternative transform coder design criterion based on restricting the maximum perceptual error of each coefficient is proposed. This perceptually uniform quantisation of the transform domain ensures that the perceptual error will be below a certain limit regardless of the particular input image. The results show that the proposed criterion improves the subjective quality of the conventional average error criterion even if it is weighted with the same perceptual metric.
A Novel Iris Recognition System based on Micro-Features
2007
In this paper a novel approach for iris recognition system based on iris micro-features is proposed. The proposed system follows the minutiae based approach developed for fingerprint recognition systems. The proposed system uses four iris microfeatures, considered as minutiae, for identification. The individualized characteristics are nucleus, collarette, valleys and radius. Iris recognition is divided in three main phases: image preprocessing, micro-features extraction and matching. The algorithm has been tested on CASIA v1.0 iris image database obtaining an high accuracy. The obtained experimental results have been analyzed and compared with the Daugman based approach.
Performance evaluation of simple fingerprint minutiae extraction algorithm using crossing number on valley structure
2008
In fingerprint recognition system, performance of fingerprint feature extraction algorithm is important. We use visual analysis to evaluate this performance. 100 respondents fill a questionnaire consisting of 30 images from fingerprint feature extraction process. We get 12,3 % minutiae points missed by this algorithm. With BOZORTH3 minutiae matching algorithm, the distribution of matching score of 80-fingerprint images are presented and we obtain EER 5.89 % at threshold value 180.
Image enhancement in simple fingerprint minutiae extraction algorithm using crossing number on valley structure
2007
In fingerprint recognition system, fingerprint feature extraction algorithm requires good quality fingerprint images to produce good results. Therefore, one step in the preprocessing stage is image enhancement to improve the quality of poor fingerprint image, so the minutiae points can be detected with good results. In this paper, we present how this enhancement process in simple minutiae detection algorithm using crossing number on valley structure improves detection of true minutiae.