Search results for "photoactivation"

showing 6 items of 6 documents

The three-dimensional structure of Drosophila melanogaster (6–4) photolyase at room temperature

2021

A crystal structure of a photolyase at room temperature confirms the structural information obtained from cryogenic crystallography and paves the way for time-resolved studies of the photolyase at an X-ray free-electron laser.

MECHANISMMaterials scienceAbsorption spectroscopyDNA repairfotobiologia02 engineering and technologyCrystal structureREPAIR ACTIVITY03 medical and health sciencesCOLI DNA PHOTOLYASEX-RAY-DIFFRACTIONCryptochromeStructural BiologyAnimalsserial crystallographyCRYSTAL-STRUCTURECRYPTOCHROMEPhotolyaseSERIAL FEMTOSECOND CRYSTALLOGRAPHY030304 developmental biology0303 health sciencesCrystallographyflavoproteinsFADResolution (electron density)TemperaturebanaanikärpänenDNAkidetiede(6-4) photolyase021001 nanoscience & nanotechnologyResearch PapersRADICAL TRANSFER(6–4) photolyaseroom-temperature structureCrystallographyphotolyasesDrosophila melanogasterRECONSTITUTIONX-ray crystallography1182 Biochemistry cell and molecular biologylämpötilaproteiinit0210 nano-technologyDeoxyribodipyrimidine Photo-LyasePHOTOACTIVATIONVisible spectrumActa Crystallographica Section D Structural Biology
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Structural photoactivation of a full-length bacterial phytochrome

2016

Time-resolved x-ray solution scattering reveals the conformational signaling mechanism of a bacterial phytochrome.

Models Molecular0301 basic medicineProtein ConformationAstrophysics::High Energy Astrophysical Phenomena116 Chemical sciencesPhotoreceptors MicrobialphytochromesQuantitative Biology::Cell BehaviorStructure-Activity Relationship03 medical and health sciencesProtein structureBacterial ProteinsStructural BiologyDeinococcus radioduransBotanyResearch Articles219 Environmental biotechnologyMultidisciplinarybiologyPhytochromeHistidine kinaseta1182SciAdv r-articlesDeinococcus radioduransChromophorebiology.organism_classificationKineticsMicrosecond030104 developmental biologyStructural changephotoactivationBiophysicsPhytochromeFunction (biology)Research Article
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Tips and turns of bacteriophytochrome photoactivation

2020

Phytochromes are ubiquitous photosensor proteins, which control the growth, reproduction and movement in plants, fungi and bacteria. Phytochromes switch between two photophysical states depending on the light conditions. In analogy to molecular machines, light absorption induces a series of structural changes that are transduced from the bilin chromophore, through the protein, and to the output domains. Recent progress towards understanding this structural mechanism of signal transduction has been manifold. We describe this progress with a focus on bacteriophytochromes. We describe the mechanism along three structural tiers, which are the chromophore-binding pocket, the photosensory module,…

Models MolecularProtein Conformation116 Chemical sciencesHISTIDINE KINASESSIGNAL-TRANSDUCTIONfotobiologiabacteriophytochrome photoactivation010402 general chemistry01 natural sciencesbakteeritPhytochrome B03 medical and health sciencesProtein structureBacterial ProteinsINDUCED PROTON RELEASEPHYTOCHROME-BCRYSTAL-STRUCTUREPhysical and Theoretical Chemistry030304 developmental biologyINDUCED CONFORMATIONAL-CHANGESPhysics0303 health sciencesRESONANCE RAMANMechanism (biology)AGROBACTERIUM-TUMEFACIENSPhotochemical ProcessesMolecular machine0104 chemical sciencesINFRARED FLUORESCENT PROTEINSCHROMOPHORE-BINDING DOMAINBiophysics1182 Biochemistry cell and molecular biologyvalokemiaproteiinitPhytochromeSignal TransductionPhotochemical & Photobiological Sciences
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Sequential conformational transitions and α-helical supercoiling regulate a sensor histidine kinase

2017

Sensor histidine kinases are central to sensing in bacteria and in plants. They usually contain sensor, linker, and kinase modules and the structure of many of these components is known. However, it is unclear how the kinase module is structurally regulated. Here, we use nano- to millisecond time-resolved X-ray scattering to visualize the solution structural changes that occur when the light-sensitive model histidine kinase YF1 is activated by blue light. We find that the coiled coil linker and the attached histidine kinase domains undergo a left handed rotation within microseconds. In a much slower second step, the kinase domains rearrange internally. This structural mechanism presents a t…

Models MolecularkinaasitentsyymitHistidine KinaseLightProtein ConformationScienceQCrystallography X-RayArticleProtein Structure SecondaryaktivointiBacterial ProteinsProtein DomainsX-Ray DiffractionphotoactivationScattering Small AngleNanotechnologysensor histidine kinasesNature Communications
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DNA-binding and in vitro cytotoxic activity of platinum(II) complexes of curcumin and caffeine

2019

Abstract Three Pt(II) complexes containing the natural ligands curcumin and caffeine, namely [Pt(curc)(PPh3)2]Cl (1), [PtCl(curc)(DMSO)] (2) (curc = deprotonated curcumin) and trans-[Pt(caffeine)Cl2(DMSO)] (3), were synthesized and fully characterized. The data obtained suggest that, for both 1 and 2, the anion of curcumin is coordinated to the platinum ion via the oxygen atoms of the β-diketonate moiety. Spectroscopic features reveal that in 2 and 3, a DMSO molecule is S-bonded to the metal centre. For 3, all data indicate a square-planar geometry formed by a 9-N bonded caffeine, two trans chloride anions and a DMSO. The three complexes undergo changes in solution upon incubation for 24 h;…

PhotoactivationCurcuminCytotoxicityIntercalation (chemistry)chemistry.chemical_elementCaffeine; Curcumin; Cytotoxicity; DNA interaction; Natural ligands; Photoactivation; Platinum(II) complexAntineoplastic Agents010402 general chemistryLigands01 natural sciencesBiochemistryMedicinal chemistryNucleobaseInorganic Chemistrychemistry.chemical_compoundDrug StabilityCoordination ComplexesCaffeineCell Line TumorMoietyMoleculeAnimalsHumansPlatinumMolecular Structure010405 organic chemistryDNA0104 chemical sciencesDNA interactionchemistryCurcuminPlatinum(II) complexCattleCaffeine Curcumin Cytotoxicity DNA interaction Natural ligands Photoactivation Platinum(II) complexCisplatinDrug Screening Assays AntitumorSelectivityPlatinumNatural ligandsCis–trans isomerism
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Photoactive Yellow Protein Chromophore Photoisomerizes around a Single Bond if the Double Bond Is Locked

2020

Photoactivation in the Photoactive Yellow Protein, a bacterial blue light photoreceptor, proceeds via photo-isomerization of the double C=C bond in the covalently attached chromophore. Quantum chemistry calculations, however, have suggested that in addition to double bond photo-isomerization, the isolated chromophore and many of its analogues, can isomerize around a single C-C bond as well. Whereas double bond photo-isomerization has been observed with x-ray crystallography, experimental evidence for single bond photo-isomerization is currently lacking. Therefore, we have synthesized a chromophore analogue, in which the formal double bond is covalently locked in a cyclopentenone ring and ca…

double bond0301 basic medicinephotoactive yellow proteinLetterDouble bondPhotoisomerizationisomeriaPhotochemistryConjugated systemsingle bond010402 general chemistryRing (chemistry)Photochemistry01 natural scienceskemialliset sidokset03 medical and health sciencesSingle bondHumansGeneral Materials ScienceBisphenol A-Glycidyl MethacrylatePhysical and Theoretical Chemistrychemistry.chemical_classificationMolecular switchProteinsChromophore0104 chemical sciences030104 developmental biologychemistryphotoactivationCovalent bondvalokemiaproteiinitphoto-isomerizationThe Journal of Physical Chemistry Letters
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