Search results for "phylogenetic diversity"
showing 9 items of 19 documents
Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development
2018
TheMycobacterium tuberculosiscomplex (MTBC) causes tuberculosis (TB) in humans and various other mammals. The human-adapted members of the MTBC comprise seven phylogenetic lineages that differ in their geographical distribution. There is growing evidence that this phylogenetic diversity modulates the outcome of TB infection and disease. For decades, TB research and development has focused on the two canonical MTBC reference strains H37Rv and Erdman, both of which belong to Lineage 4. Relying on only a few laboratory-adapted strains can be misleading as study results might not be directly transferrable to clinical settings where patients are infected with a diverse array of strains, includin…
Plant facilitation and phylogenetics
2013
The relationship between facilitation and evolutionary ecology is poorly understood. We review five issues elucidating how the phylogenetic relatedness of species provides insight into the role of facilitation in community assembly: (a) Are the facilitative interactions more common between species that differ in a regeneration niche? (b) Are facilitative interactions more common between distantly related species? (c) Do communities governed by facilitation (rather than competition) have higher phylogenetic diversity? (d) As facilitated juvenile plants mature, do they compete with their nurses more often if they are closely related to them? (e) How does the phylogenetic signature in a commun…
Risk factors for Lyme disease : A scale-dependent effect of host species diversity and a consistent negative effect of host phylogenetic diversity
2021
Biodiversity can influence disease risk. One example of a diversity-disease relationship is the dilution effect, which suggests higher host species diversity (often indexed by species richness) reduces disease risk. While numerous studies support the dilution effect, its generality remains controversial. Most studies of diversity-disease relationships have overlooked the potential importance of phylogenetic diversity. Furthermore, most studies have tested diversity-disease relationships at one spatial scale, even though such relationships are likely scale dependent. Using Lyme disease as a model system, we investigated the effects of host species richness and phylogenetic relatedness on the…
SELECTING HERB-RICH FOREST NETWORKS TO PROTECT DIFFERENT MEASURES OF BIODIVERSITY
2001
Data on vascular plants of herb-rich forests in Finland were used to compare the efficiency of reserve selection methods in representing three measures of biodiversity: species richness, phylogenetic diversity, and restricted-range diversity. Comparisons of reserve selection methods were carried out both with and without consideration of the existing reserve system. Our results showed that the success of a reserve network of forests in representing different measures of biodiversity depends on the selection procedure, selection criteria, and data set used. Ad hoc selection was the worst option. A scoring procedure was generally more efficient than maximum random selection. Heuristic methods…
Selecting networks of nature reserves: methods do affect the long-term outcome
1999
Data on vascular plants of boreal lakes in Finland were used to compare the efficiency of reserve selection methods in representing four aspects of biodiversity over a 63 year period. These aspects included species richness, phylogenetic diversity, restricted range diversity and threatened species. Our results show that the efficiency of reserve selection methods depends on the selection criteria used and on the aspect of biodiversity under consideration. Heuristic methods and optimizing algorithms were nearly equally efficient in selecting lake networks over a small geographical range. In addition, a scoring procedure was observed to be efficient in maintaining different aspects of biodive…
The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
2021
This version of the article has been accepted for publication, after peer review and is subject to Springer Nature’s AM terms of use, but is not the Version of Record and does not reflect post-acceptance improvements, or any corrections. The Version of Record is available online at https://doi.org/10.1007/s13225-021-00493-7. Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fu…
New Algorithms for Computing Phylogenetic Biodiversity
2014
A common problem that appears in many case studies in ecology is the following: given a rooted phylogenetic tree \(\mathcal{T}\) and a subset R of its leaf nodes, we want to compute the distance between the elements in R. A very popular distance measure that can be used for this reason is the Phylogenetic Diversity (PD), which is defined as the cost of the minimum weight Steiner tree in \(\mathcal{T}\) that spans the nodes in R. To analyse the value of the PD for a given set R it is important also to calculate the variance of this measure. However, the best algorithm known so far for computing the variance of the PD is inefficient; for any input tree \(\mathcal{T}\) that consists of n nodes…
Loss in microbial diversity affects nitrogen cycling in soil
2013
International audience; Microbial communities have a central role in ecosystem processes by driving the Earth's biogeochemical cycles. However, the importance of microbial diversity for ecosystem functioning is still debated. Here, we experimentally manipulated the soil microbial community using a dilution approach to analyze the functional consequences of diversity loss. A trait-centered approach was embraced using the denitrifiers as model guild due to their role in nitrogen cycling, a major ecosystem service. How various diversity metrics related to richness, eveness and phylogenetic diversity of the soil denitrifier community were affected by the removal experiment was assessed by 454 s…
Host filtering, not competitive exclusion, may be the main driver of arbuscular mycorrhizal fungal community assembly under high phosphorus
2023
A major goal in ecology is understanding the factors which determine the diversity and distribution of organisms. The outcome of the symbiotic relationship between plants and arbuscular mycorrhizal (AM) fungi is strongly influenced by soil phosphorus (P) availability. Despite this knowledge, there is still much to uncover about how soil P status can shape the taxonomic and phylogenetic assembly of root-colonising AM fungi. Additionally, there is a paucity of understanding about the implications of these changes for the outcome of the AM symbiosis in terms of plant growth, nutrient status and defence traits. We conducted a factorial pot experiment where sorghum (Sorghum bicolor) was grown un…