Search results for "phylogenetic"
showing 10 items of 1179 documents
Phylogeny and morphology of Anthracoidea pamiroalaica sp. nov. infecting the endemic sedge Carex koshewnikowii in the Pamir Alai Mts (Tajikistan)
2015
A novel Anthracoidea species, A. pamiroalaica on the endemic sedge Carex koshewnikowii, is described and illustrated from the Pamir Alai Mts in Tajikistan (Central Asia). The new species is phenotypically nearly identical with Anthracoidea sempervirentis, but clearly divergent genetically. Phylogenetic analyses based on LSU sequences showed affinity of Anthracoidea pamiroalaica to A. baldensis, A. rupestris, A. capillaris, and A. vankyi infecting host sedges in different Carex sections (Baldenses, Rupestres, Chlorostachyae, and Phaestoglochin, respectively), but not to A. misandrae, and A. sempervirentis, two sequenced species parasitic on host species from the section Aulocystis. This phyl…
Phylogenetic analysis of cryptic speciation in the polychaetePygospio elegans
2012
Development in marine invertebrate species can take place through a variety of modes and larval forms, but within a species, developmental mode is typically uniform. Poecilogony refers to the presence of more than one mode of development within a single species. True poecilogony is rare, however, and in some cases, apparent poecilogony is actually the result of variation in development mode among recently diverged cryptic species. We used a phylogenetic approach to examine whether poecilogony in the marine polychaete worm, Pygospio elegans, is the result of cryptic speciation. Populations of worms identified as P. elegans express a variety of developmental modes including planktonic, broode…
Morphologically similar but not closely related: the long-spored species of Subulicystidium (Trechisporales, Basidiomycota)
2020
AbstractSpecies boundaries and geographic distribution of corticioid fungi (resupinate Basidiomycota) are often poorly known. Our recent study on Subulicystidium showed that species diversity in this genus is at least twice as high as previously recognized. This re-estimation of the species diversity was based on a study of only a part of the genus. The present study sheds light on molecular and morphological diversity of three more species. We generated 27 ITS and 24 28S nuclear ribosomal DNA sequences from 49 specimens labelled as Subulicystidium cochleum, S. longisporum and S. perlongisporum and collected in distant geographic localities. We assessed pairwise dissimilarities and phylogen…
Molecular Evolution and the Phylogenetic Relationships of the African Toad, Bufo danielae PERRET, 1977 (Salientia : Bufonidae)
1980
Abstract Phylogenetic relationships of the African toad Bufo danielae are investigated using a variety of biochemical approaches. Nuclear DNA content was assayed and compared to representatives of three species groups of African Bufo. Cellogel electrophoresis of plasma proteins was performed and patterns of B. danielae compared with those of representatives of the African B. regularis species complex. Finally microcomplement fixation analyses of albumin relationships of B. danielae and African Bufo were carried out. The strengths of the varied approaches for phylogenetic analysis are discussed. B. danielae appears most closely related to B. maculatus and B. pusillus, it being some 5-6 mill…
Salicornia L. (Amaranthaceae) in South Africa and Namibia: rapid spread and ecological diversification of cryptic species
2013
In Salicornia, morphology does not provide reliable diagnostic characters supporting the true extent of evolutionary divergence in the genus, and species concepts have been challenged by molecular analyses. Here, we report the results of an analysis of 91 accessions of the S. meyeriana complex from South Africa and Namibia using the measurements of 38 morphological traits and external transcribed spacer (ETS) sequence data. Morphological data were analysed using discriminant analysis, principal coordinate analysis and nonmetric multidimensional scaling. Phylogenetic divergence was compared with the geographical and ecological diversity of the sampled populations. Tree topology corresponds t…
Gisekia(Gisekiaceae): Phylogenetic relationships, biogeography, and ecophysiology of a poorly known C4lineage in the Caryophyllales
2014
• Premise of the study: Gisekiaceae are a monogeneric family of the core Caryophyllales distributed in arid regions of Africa and Asia. The only widespread species of the genus, Gisekia pharnaceoides, performs C4 photosynthesis based on CO2 compensation point measurements. This study investigates the C4 syndrome and its evolution in Gisekia. The infrageneric relationships, distribution and bioclimatic preferences of Gisekia are also investigated.• Methods: Leaf gas exchange characteristics, activity of Rubisco and major C4 cycle enzymes, and ultrastructural characteristics of mesophyll and bundle sheath cells are studied for Gisekia pharnaceoides. δ13C values and leaf anatomy are analyzed f…
New insights into the taxonomy and phylogeny of social voles inferred from mitochondrial cytochrome b sequences
2012
We sequenced the entire cytochrome b gene in Microtus paradoxus from Turkmenistan and Microtus socialis from Crimea and Kalmykia. Phylogenetic relationships among social voles were reconstructed by the inclusion into analyses of a further 23 published haplotypes belonging to six species. The two probabilistic methods which were used in phylogenetic analyses, the Bayesian inference and Maximum Likelihood, yielded very similar results. Both trees showed two highly divergent lineages which were further subdivided into seven species. The socialis lineage encompassed four species (M. socialis, M. irani, M. anatolicus, and M. paradoxus), and the remaining three species clustered into the guenther…
Molecular Evolution of Defense Pathways in Sponges: Self–Self-recognition and Fight against the Nonself
2016
This article provides an overview of the immune system in poriferans at a tissue, cellular, and molecular level. Despite their simple organization, sponges have developed molecular mechanisms to recognize and resist foreign organisms. They are able to distinguish among food organisms, pathogens, and sponge-associated organisms. Although they lack specialized immune cells, sponges display molecular precursors, which are similar to molecular mediators involved in innate and adaptive immune systems, present in more evolutionarily advanced taxa, as outlined in succeeding articles in the Phylogeny section.
Skull osteology ofParvilacerta parva, a small-sized lacertid lizard from Asia Minor
2002
The skull of the poorly known Asia Minor lacertid lizard Parvilacerta parva is described. In comparison to other palaearctic lacertids, Parvilacerta parva displays several peculiar traits such as a large braincase, a short parietal table, closed post-temporal openings, reduced ossification, or a large lacrimal. Many features are related to the small size of Parvilacerta parva and are of apparently heterochronic nature, as they can also be found in certain ontogenetic stages of other lacertid species. Small size and heterochrony even seem to be factors involved in the less-developed sexual dimorphism of Parvilacerta parva. The described morphology is interpreted to be related to a life histo…
Rapid differentiation between livestock-associated and livestock-independent Staphylococcus aureus CC398 clades.
2013
Staphylococcus aureus clonal complex 398 (CC398) isolates cluster into two distinct phylogenetic clades based on single-nucleotide polymorphisms (SNPs) revealing a basal human clade and a more derived livestock clade. The scn and tet(M) genes are strongly associated with the human and the livestock clade, respectively, due to loss and acquisition of mobile genetic elements. We present canonical single-nucleotide polymorphism (canSNP) assays that differentiate the two major host-associated S. aureus CC398 clades and a duplex PCR assay for detection of scn and tet (M). The canSNP assays correctly placed 88 S. aureus CC398 isolates from a reference collection into the human and livestock clade…