Search results for "physiologic"

showing 10 items of 2593 documents

SMART: Unique splitting-while-merging framework for gene clustering

2014

© 2014 Fa et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Successful clustering algorithms are highly dependent on parameter settings. The clustering performance degrades significantly unless parameters are properly set, and yet, it is difficult to set these parameters a priori. To address this issue, in this paper, we propose a unique splitting-while-merging clustering framework, named "splitting merging awareness tactics" (SMART), which does not require any a priori knowledge of either the number …

Clustering algorithmsMicroarrayslcsh:MedicineGene ExpressionBioinformaticscomputer.software_genreCell SignalingData MiningCluster Analysislcsh:ScienceFinite mixture modelOligonucleotide Array Sequence AnalysisPhysicsMultidisciplinarySMART frameworkConstrained clusteringCompetitive learning modelBioassays and Physiological AnalysisMultigene FamilyCanopy clustering algorithmEngineering and TechnologyData miningInformation TechnologyGenomic Signal ProcessingAlgorithmsResearch ArticleSignal TransductionComputer and Information SciencesFuzzy clusteringCorrelation clusteringResearch and Analysis MethodsClusteringMolecular GeneticsCURE data clustering algorithmGeneticsGene RegulationCluster analysista113Gene Expression Profilinglcsh:RBiology and Life SciencesComputational BiologyCell BiologyDetermining the number of clusters in a data setComputingMethodologies_PATTERNRECOGNITIONSplitting-merging awareness tactics (SMART)Signal ProcessingAffinity propagationlcsh:QGene expressionClustering frameworkcomputer
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Old Weapons for New Wars: Bioactive Molecules From Cnidarian Internal Defense Systems

2016

The renewed interest in the study of genes of immunity in Cnidaria has led to additional information to the scenario of the first stages of immunity evolution revealing the cellular processes involved in symbiosis, in the regulation of homeostasis and in the fight against infections. The recent study with new molecular and functional approach on these organisms have therefore contributed with unexpected information on the knowledge of the stages of capturing activities and defense mechanisms strongly associated with toxin production. Cnidarians are diblastic aquatic animals with radial symmetry; they represent the ancestral state of Metazoa, they are the simplest multicellular organisms tha…

CnidariaImmune defenseMicrobial toxinsbiologyPhylumEcologyGeneral NeuroscienceBioactive moleculesNeurotoxinsDefence mechanismsbiology.organism_classificationCnidariaMulticellular organismCnidarian VenomsNeuropsychology and Physiological PsychologyAnti-Infective AgentsAntimicrobial peptide Cnidaria Cytolysins Immune defense Neurotoxin ToxinsImmunityEvolutionary biologyAnimalsHumansMolecular MedicinePeptidesSodium Channel Blockers
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Calcification is not the Achilles' heel of cold-water corals in an acidifying ocean

2015

Ocean acidification is thought to be a major threat to coral reefs: laboratory evidence and CO2 seep research has shown adverse effects on many coral species, although a few are resilient. There are concerns that cold-water corals are even more vulnerable as they live in areas where aragonite saturation (?ara) is lower than in the tropics and is falling rapidly due to CO2 emissions. Here, we provide laboratory evidence that net (gross calcification minus dissolution) and gross calcification rates of three common cold-water corals, Caryophyllia smithii, Dendrophyllia cornigera, and Desmophyllum dianthus, are not affected by pCO2 levels expected for 2100 (pCO2 1058 ?atm, ?ara 1.29), and nor a…

CnidariaSettore BIO/07 - EcologiaCaryophyllia smithiiCoralcold-water coralsocean acidificationengineering.materialCaryophyllia smithiiDendrophyllia cornigeraCold-water coralcalcification and dissolutionCalcification PhysiologicAnthozoaTheoryofComputation_ANALYSISOFALGORITHMSANDPROBLEMCOMPLEXITYComputingMethodologies_SYMBOLICANDALGEBRAICMANIPULATIONMediterranean SeaAnimalsEnvironmental ChemistrySeawaterGlobal ChangeReefDesmophyllum dianthuGeneral Environmental ScienceGlobal and Planetary ChangegeographyDesmophyllum dianthusgeography.geographical_feature_categorybiologyEcology2300EcologyAragoniteOcean acidificationfungiCalcification and dissolutionOcean acidificationCoral reefbiochemical phenomena metabolism and nutritionCarbon DioxideHydrogen-Ion Concentrationbiology.organism_classificationAnthozoaOceanographyengineeringCold-water coralsgeographic locationsMathematicsofComputing_DISCRETEMATHEMATICS
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Heat shock and Cd2+ exposure regulate PML and Daxx release from ND10 by independent mechanisms that modify the induction of heat-shock proteins 70 an…

2003

Nuclear domains called ND10 or PML bodies might function as nuclear depots by recruiting or releasing certain proteins. Although recruitment of proteins through interferon-induced upregulation and SUMO-1 modification level of PML had been defined, it is not known whether release of proteins is regulated and has physiological consequences. Exposure to sublethal environmental stress revealed a sequential release of ND10-associated proteins. Upon heat shock Daxx and Sp100 were released but PML remained, whereas exposure to subtoxic concentrations of CdCl2 induced the release of ND10-associated proteins, including PML, with Sp100 remaining in a few sites. In both cases,recovery times were simil…

Co-Repressor ProteinsMAP Kinase Signaling SystemMacromolecular SubstancesSUMO-1 ProteinPromyelocytic Leukemia ProteinMicePromyelocytic leukemia proteinDeath-associated protein 6Stress PhysiologicalHeat shock proteinEndopeptidasesAnimalsHSP70 Heat-Shock ProteinsEnzyme InhibitorsHeat shockTranscription factorCells CulturedHeat-Shock ProteinsbiologyTumor Suppressor ProteinsIntracellular Signaling Peptides and ProteinsNuclear ProteinsCell BiologyCell Nucleus StructuresNeoplasm ProteinsCell biologyHsp70Cysteine EndopeptidasesEukaryotic CellsGene Expression RegulationImmunologybiology.proteinSignal transductionCarrier ProteinsCo-Repressor ProteinsHeat-Shock ResponseCadmiumMolecular ChaperonesTranscription FactorsJournal of Cell Science
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Space counts! Brain correlates of spatial and numerical representations in synaesthesia

2018

Over-learned semantic representations, such as numbers, are strongly associated with space in normal cognition, and in the phenomenon called number-space synaesthesia. In number-space synaesthesia, numbers are linked to spatial locations in an idiosyncratic way. Synaesthetes report numbers as belonging to a specific location, or feelings that a specific location is the right location for that number. What does really differentiate synaesthetes from non-synaesthetes with respect to their number-space representation? Here we present a number-space synaesthete, MkM, whose number-space representation dramatically differs from that of controls. We examined the impact of spatial distance with res…

Cognitive Neuroscience05 social sciencesNumerical cognitionBrainExperimental and Cognitive PsychologyStimulus (physiology)Somatosensory system050105 experimental psychologyNumerical digit03 medical and health sciencesCognition0302 clinical medicineNeuropsychology and Physiological PsychologyNeuroimagingParietal LobeSpace PerceptionHumans0501 psychology and cognitive sciencesSpatial representationMental number linePsychologySynesthesia030217 neurology & neurosurgeryCognitive psychologyCoding (social sciences)Cortex
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Salsolinol and ethanol-derived excitation of dopamine mesolimbic neurons: new insights

2013

Evidence supporting the essential role of brain-derived ethanol metabolites in the excitation of dopamine (DA) midbrain neurons has multiplied in the last 10–15 years. The pioneer and influential behavioral studies by CM Aragon and colleagues (see Correa et al., 2012 for a complete review) and more recent data (Sanchez-Catalan et al., 2009; Marti-Prats et al., 2010, 2013) have repeatedly demonstrated the crucial role displayed by acetaldehyde (ACD) in the locomotor and other behavioral responses elicited by ethanol. Although these experiments mainly used an indirect measure (exploratory locomotion) as an index of the excitation of DA neurons in the ventral tegmental area (VTA), results stro…

Cognitive NeuroscienceAcetaldehydeStriatumInhibitory postsynaptic potentiallcsh:RC321-571Behavioral NeuroscienceGlutamatergicDopaminemedicinePremovement neuronal activitylcsh:Neurosciences. Biological psychiatry. NeuropsychiatryGeneral Commentary ArticleSalsolinolElectrophysiologyVentral tegmental areaµ-Opioid ReceptorsElectrophysiologyNeuropsychology and Physiological Psychologymedicine.anatomical_structurenervous systemHypothalamusDopamine Midbrain NeuronsPsychologyNeuroscienceNeurosciencemedicine.drugFrontiers in Behavioral Neuroscience
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Harmonic priming in an amusic patient: the power of implicit tasks.

2008

Our study investigated with an implicit method (i.e., priming paradigm) whether I.R. - a brain-damaged patient exhibiting severe amusia - processes implicitly musical structures. The task consisted in identifying one of two phonemes (Experiment 1) or timbres (Experiment 2) on the last chord of eight-chord sequences (i.e., target). The targets were harmonically related or less related to the prior chords. I.R. displayed harmonic priming effects: Phoneme and timbre identification was faster for related than for less related targets (Experiments 1 and 2). However, I.R.'s explicit judgements of completion for the same sequences did not differ between related and less related contexts (Experimen…

Cognitive NeuroscienceAuditory Perceptual DisordersExperimental and Cognitive PsychologyRecognition PsychologyMiddle AgedTemporal LobeDevelopmental psychologyImplicit knowledgeJudgmentNeuropsychology and Physiological PsychologyArts and Humanities (miscellaneous)PhoneticsDevelopmental and Educational PsychologyChord (music)HumansFemalePsychologyTomography X-Ray ComputedTimbreMusicCognitive psychologyCognitive neuropsychology
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Pheromone-induced olfactory memory in newborn rabbits: Involvement of consolidation and reconsolidation processes.

2009

Mammary pheromone (MP)-induced odor memory is a new model of appetitive memory functioning early in a mammal, the newborn rabbit. Some properties of this associative memory are analyzed by the use of anisomycin as an amnesic agent. Long-term memory (LTM) was impaired by anisomycin delivered immediately, but not 4 h after either acquisition or reactivation. Thus, the results suggest that this form of neonatal memory requires both consolidation and reconsolidation. By extending these notions to appetitive memory, the results reveal that consolidation and reconsolidation processes are characteristics of associative memories of positive events not only in the adult, but also in the newborn.

Cognitive NeuroscienceConditioning ClassicalPheromones03 medical and health sciencesCellular and Molecular Neurosciencechemistry.chemical_compound0302 clinical medicineAnimals[SDV.NEU] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]Olfactory memoryAnisomycinComputingMilieux_MISCELLANEOUS030304 developmental biologyProtein Synthesis Inhibitors0303 health sciencesAppetitive BehaviorChi-Square DistributionConsolidation (soil)Long-term memoryAssociation LearningBrainRecognition PsychologyContent-addressable memoryOlfactory PerceptionNeuropsychology and Physiological PsychologyMemory Short-TermOdorchemistryAnimals NewbornPheromoneMemory consolidation[SDV.NEU]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]RabbitsPsychologyNeuroscience030217 neurology & neurosurgeryAnisomycinCognitive psychologyLearningmemory (Cold Spring Harbor, N.Y.)
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Context specificity of both acquisition and extinction of a Pavlovian conditioned response

2016

It is widely held that the extinction of a conditioned response is more context specific than its initial acquisition. One proposed explanation is that context serves to disambiguate the meaning of a stimulus. Using a procedure that equated the learning histories of the contexts, we show that the memory of an appetitive Pavlovian association can be highly context specific despite being unambiguous. This result is inconsistent with predictions of the Rescorla–Wagner model of learning but in line with configural accounts of contextual control of behavior. We propose an explanatory model in which context serves to modulate the gain of associative strength and which expands upon the configural …

Cognitive NeuroscienceExplanatory modelConditioning ClassicalStimulus (physiology)EnvironmentModels PsychologicalBrief CommunicationExtinction PsychologicalAssociation03 medical and health sciencesCellular and Molecular Neuroscience0302 clinical medicineMemoryAnimals0501 psychology and cognitive sciences050102 behavioral science & comparative psychologyColumbidaeAssociative propertyPsychological Tests05 social sciencesConditioned responseNeuropsychology and Physiological PsychologyFoodContext specificContext specificityPsychology030217 neurology & neurosurgeryCognitive psychology
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Visual mismatch negativity (vMMN): A review and meta-analysis of studies in psychiatric and neurological disorders

2015

The visual mismatch negativity (vMMN) response is an event-related potential (ERP) component, which is automatically elicited by events that violate predictions based on prior events. VMMN experiments use visual stimulus repetition to induce predictions, and vMMN is obtained by subtracting the response to rare unpredicted stimuli from those to frequent stimuli. One increasingly popular interpretation of the mismatch response postulates that vMMN, similar to its auditory counterpart (aMMN), represents a prediction error response generated by cortical mechanisms forming probabilistic representations of sensory signals. Here we discuss the physiological and theoretical basis of vMMN and review…

Cognitive NeuroscienceMismatch negativityExperimental and Cognitive PsychologySensory systemStimulus (physiology)050105 experimental psychologyDevelopmental psychology03 medical and health sciences0302 clinical medicineStimulus modalityEvent-related potentialmedicineAnimalsHumans0501 psychology and cognitive sciencesEvoked PotentialsMental Disorders05 social sciencesInformation processingBrainElectroencephalographyCognitionmedicine.diseaseNeuropsychology and Physiological PsychologyMood disordersVisual PerceptionEvoked Potentials VisualNervous System DiseasesPsychology030217 neurology & neurosurgeryCognitive psychologyCortex
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