Search results for "pii"

Putative p24 complexes in Arabidopsis contain members of the delta and beta subfamilies and cycle in the early secretory pathway

2013

p24 proteins are a family of type I membrane proteins localized to compartments of the early secretory pathway and to coat protein I (COPI)- and COPII-coated vesicles. They can be classified, by sequence homology, into four subfamilies, named p24α, p24β, p24γ, and p24δ. In contrast to animals and fungi, plants contain only members of the p24β and p24δ subfamilies, the latter probably including two different subclasses. It has previously been shown that transiently expressed red fluorescent protein (RFP)-p24δ5 (p24δ1 subclass) localizes to the endoplasmic reticulum (ER) at steady state as a consequence of highly efficient COPI-based recycling from the Golgi apparatus. It is now shown that tr…

Coupled transport of Arabidopsis p24 proteins at the ER–Golgi interface

2012

p24 proteins are a family of type I membrane proteins localized to compartments of the early secretory pathway and to coat protein I (COPI)- and COPII-coated vesicles. They can be classified, by sequence homology, into four subfamilies, named p24α, p24β, p24γ, and p24δ. In contrast to animals and fungi, plants contain only members of the p24β and p24δ subfamilies. It has previously been shown that transiently expressed red fluorescent protein (RFP)–p24δ5 localizes to the endoplasmic reticulum (ER) as a consequence of highly efficient COPI-based recycling from the Golgi apparatus. Using specific antibodies, endogenous p24δ5 has now been localized to the ER and p24β2 to the Golgi apparatus in…

Minimum Description Length Based Hidden Markov Model Clustering for Life Sequence Analysis

2010

In this article, a model-based method for clustering life sequences is suggested. In the social sciences, model-free clustering methods are often used in order to find typical life sequences. The suggested method, which is based on hidden Markov models, provides principled probabilistic ranking of candidate clusterings for choosing the best solution. After presenting the principle of the method and algorithm, the method is tested with real life data, where it finds eight descriptive clusters with clear probabilistic structures. nonPeerReviewed

Polynomial Regression and Measurement Error

2020

Many of the phenomena of interest in information systems (IS) research are nonlinear, and it has consequently been recognized that by applying linear statistical models (e.g., linear regression), we may ignore important aspects of these phenomena. To address this issue, IS researchers are increasingly applying nonlinear models to their datasets. One popular analytical technique for the modeling and analysis of nonlinear relationships is polynomial regression, which in its simplest form fits a "U-shaped" curve to the data. However, the use of polynomial regression can be problematic when the independent variables are contaminated with measurement error, and the implications of error can be m…

Up-to-date report on the distribution ofHelianthemum lippii(Cistaceae) in Italy

2015

An up-to-date report on the distribution of Helianthemum lippii in Italy is provided also on the basis of the findings by Lojacono-Pojero in 1889 who reported the existence of a relic population in Sicily (southern Italy), which is now thought to be extinct because of human disturbance. Field excursions permitted to confirm the locus classicus reported by Lojacono-Pojero as the other Sicilian localities that have been reported more recently. Based on a careful analysis of the literature the presence of H. lippii is currently excluded in Calabria and Apulia. The main causes that threaten the habitat of H. lippii in Sicily are pointed out according to IUCN Threats Classification Scheme.

Tráfico intracelular de proteínas de la familia p24 en células vegetales

2014

Las proteínas p24 constituyen una familia única de proteínas transmembrana de tipo I, con un peso molecular aproximado de 24 kDa, que se localizan mayoritariamente en los compartimentos de la vía secretora temprana, retículo endoplásmico (ER) y complejo de Golgi, y son componentes mayoritarios de las vesículas recubiertas por proteínas COPI o COPII. Se dividen, por homología de secuencia, en cuatro subfamilias: p24α, p24β, p24δ y p24γ. En animales y levaduras hay representantes de cada una de las 4 subfamilias; sin embargo, las plantas solo tienen miembros de la subfamilia p24β y p24δ. En Arabidopsis existen 9 miembros de la subfamilia p24δ (p24δ3-p24δ11) y 2 de la subfamilia p24β (p24β2 y …

Kalmbergin kartasto R VI : List 10

1855

Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.

2014

The p24 proteins belong to a family of type I membrane proteins which cycle between the endoplasmic reticulum (ER) and Golgi via coat protein I (COPI) and COPII vesicles. Current nomenclature classifies them into four subfamilies, although plant p24 proteins belong to either the p24β or the p24δ subfamilies. Here, we show that Arabidopsis p24δ5/δ9 and HDEL ligands shift the steady-state distribution of the K/HDEL receptor ERD2 from the Golgi to the ER. We also show that p24δ5/δ9 interact directly with ERD2. This interaction requires the Golgi dynamics (GOLD) domain in p24δ5 and is much higher at acidic than at neutral pH, consistent with both proteins interacting at the cis-Golgi. In additi…

In vivo Trafficking and Localization of p24 Proteins in Plant Cells

2008

p24 proteins constitute a family of putative cargo receptors that traffic in the early secretory pathway. p24 proteins can be divided into four subfamilies (p23, p24, p25 and p26) by sequence homology. In contrast to mammals and yeast, most plant p24 proteins contain in their cytosolic C-terminus both a dilysine motif in the -3, -4 position and a diaromatic motif in the -7, -8 position. We have previously shown that the cytosolic tail of Arabidopsis p24 proteins has the ability to interact with ARF1 and coatomer (through the dilysine motif) and with COPII subunits (through the diaromatic motif). Here, we establish the localization and trafficking properties of an Arabidopsis thaliana p24 pr…

Hacia el entendimiento del control de la expresión génica del regulón clanobacteriano del nitrógeno mediado por el factor de transcripción NtcA y la …

2018

NtcA, es un factor de transcripción cianobacteriano perteneciente a la familia CRP. Es considerado el regulador global del nitrógeno en cianobacterias ya que presenta un regulón muy amplio que incluye muchos genes implicados en el metabolismo de nitrógeno. Se activa por 2-oxoglutarato(2-OG), un indicador del nivel de nitrógeno celular y es coactivado por una proteína llamada PipX, objeto importante de este estudio. A bajo nivel de 2-OG, PipX es secuestrada por la proteína señalizadora PII quedando inaccesible para activar NtcA. Sin embargo, la unión de 2-OG a PII en condiciones de escasez de nitrógeno, libera PipX, la cual queda accesible para coactivar NtcA. Las estructuras de NtcA unido a…