Search results for "richness"

Microbial community composition but not diversity changes along succession in arctic sand dunes

2017

The generality of increasing diversity of fungi and bacteria across arctic sand dune succession was tested. Microbial communities were examined by high-throughput sequencing of 16S rRNA genes (bacteria) and internal transcribed spacer (ITS) regions (fungi). We studied four microbial compartments (inside leaf, inside root, rhizosphere and bulk soil) and characterized microbes associated with a single plant species (Deschampsia flexuosa) across two sand dune successional stages (early and late). Bacterial richness increased across succession in bulk soil and leaf endosphere. In contrast, soil fungal richness remained constant while root endosphere fungal richness increased across succession. …

Enterococcus hirae and Barnesiella intestinihominis Facilitate Cyclophosphamide-Induced Therapeutic Immunomodulatory Effects.

2016

International audience; The efficacy of the anti-cancer immunomodulatory agent cyclophosphamide (CTX) relies on intestinal bacteria. How and which relevant bacterial species are involved in tumor immunosurveillance, and their mechanism of action are unclear. Here, we identified two bacterial species, Enterococcus hirae and Barnesiella intestinihominis that are involved during CTX therapy. Whereas E. hirae translocated from the small intestine to secondary lymphoid organs and increased the intratumoral CD8/ Treg ratio, B. intestinihominis accumulated in the colon and promoted the infiltration of IFN-gamma-producing gamma delta Tau cells in cancer lesions. The immune sensor, NOD2, limited CTX…

Fungal community assemblage of different soil compartments in mangrove ecosystem

2017

AbstractThe fungal communities of different soil compartments in mangrove ecosystem are poorly studied. We sequenced the internal transcribed spacer (ITS) regions to characterize the fungal communities in Avicennia marina root-associated soils (rhizosphere and pneumatophore) and bulk soil compartments. The rhizosphere but not pneumatophore soil compartment had significantly lower fungal species richness than bulk soil. However, bulk soil fungal diversity (Shannon diversity index) was significantly higher than both pneumatophore and rhizosphere soil compartments. The different soil compartments significantly affected the fungal community composition. Pairwise sample analyses showed that bulk…

2014

Abstract. Archaea are widespread and abundant in many terrestrial and aquatic environments, and are thus outside extreme environments, accounting for up to ~10% of the prokaryotes. Compared to bacteria and other microorganisms, however, very little is known about the abundance, diversity, and dispersal of archaea in the atmosphere. By means of DNA analysis and Sanger sequencing targeting the 16S rRNA (435 sequences) and amoA genes in samples of air particulate matter collected over 1 year at a continental sampling site in Germany, we obtained first insights into the seasonal dynamics of airborne archaea. The detected archaea were identified as Thaumarchaeota or Euryarchaeota, with soil Thau…

Influence of resource quality on the composition of soil decomposer community in fragmented and continuous habitat

2004

Abstract The aim of this field experiment was to explore the combined effects of two factors potentially affecting the local composition of soil decomposer community: resource quality and habitat fragmentation. We created humus (habitat) patches with three different resource quality: (1) pure homogenised humus; (2) humus enriched with needle litter; and (3) humus enriched with needle and leaf litter. These patches were embedded either in a mineral soil matrix, thus representing fragmented habitat, or in natural forest soil, representing continuous (non-fragmented) habitat. The development of faunal (colonisations/extinctions of soil animal populations) and microbial communities in the patch…

2010

The diversity–stability hypothesis states that current losses of biodiversity can impair the ability of an ecosystem to dampen the effect of environmental perturbations on its functioning. Using data from a long-term and comprehensive biodiversity experiment, we quantified the temporal stability of 42 variables characterizing twelve ecological functions in managed grassland plots varying in plant species richness. We demonstrate that diversity increases stability i) across trophic levels (producer, consumer), ii) at both the system (community, ecosystem) and the component levels (population, functional group, phylogenetic clade), and iii) primarily for aboveground rather than belowground pr…

Re-establishment of zooplankton communities in temporary ponds after autumn flooding: Does restoration age matter?

2012

Abstract In temporary ponds, reestablishment of zooplankton communities depends on recruitment from the egg bank, the arrival of dispersers from within the region, and on successful establishment of newly arrived species following interaction with local abiotic and biotic factors. When the ponds dry up, zooplankton species may survive as dormant eggs, and since not all eggs hatch in the next season, eggs will accumulate in the sediment over time, representing an archive of the pond's historical biodiversity. To study the effect of “restoration age” (the time since a water body was restored), we studied groups of ponds that were restored in different years (1998, 2003 and 2007). The restorat…

Importance of Climate Change for the Ranges, Communities and Conservation of Birds

2004

Publisher Summary This chapter focuses on the effects of global climate change on the size and position of geographic ranges and the richness and composition of bird communities. Plenty of evidence demonstrates that range boundaries of birds are correlated with climatic factors. In general, the northern range limit of species seems to be influenced rather by abiotic factors such as cold temperatures. The southern range limit of species appears to be determined by climatic factors such as heat or lack of water in arid regions and by biotic factors in more humid regions. For communities, increases in species richness are predicted for northern latitude and high-elevation sites and declines of…

Ammonoid recovery after the Permian-Triassic mass extinction: a re-exploration of morphological and phylogenetic diversity patterns.

2013

The explosive ammonoid rediversification after the Permian–Triassic mass extinction is now well understood in terms of taxonomic richness and biogeography. Using an updated dataset of Early Triassic ammonoids, we compare morphological disparity and taxonomic richness patterns at the regional and global scales. Disparity evolved similarly at both scales, suggesting a global influence of abiotic factors. Morphological diversification occurred early in the Smithian and a marked contraction of the morphospace took place during the end-Smithian extinction. We confirm that trends in disparity and richness were decoupled during the Griesbachian and Dienerian. Three macroevolutionary processes may …

The importance of the moss layer in sustaining biological diversity of Gamasina mites in coniferous forest soil

2008

Summary The feather moss layer of boreal coniferous forests is known to buffer the underlying soil temperature and to be a major component in the nitrogen and phosphorus cycles by efficient scavenging of nutrients from throughfall and direct precipitation. Through indirect or direct effects the feather moss layer may also play a significant role in forming soil organism communities. In this 4-year experimental field study, the predatory Gamasina mite diversity was estimated in plots where the feather moss layer was removed or disturbed by turning over, in relation to that in control plots. Species richness, Shannon's diversity and equitability in spring but not autumn were decreased when th…