Search results for "root"

showing 10 items of 1237 documents

Gaining Insight into Exclusive and Common Transcriptomic Features Linked to Drought and Salinity Responses across Fruit Tree Crops

2020

The present study aimed at identifying and mapping key genes expressed in root tissues involved in drought and salinity tolerance/resistance conserved among different fruit tree species. Twenty-six RNA-Seq samples were analyzed from six published studies in five plant species (Olea europaea, Vitis riparia Michx, Prunus mahaleb, Prunus persica, Phoenix dactylifera). This meta-analysis used a bioinformatic pipeline identifying 750 genes that were commonly modulated in three salinity studies and 683 genes that were commonly regulated among three drought studies, implying their conserved role in resistance/tolerance/response to these environmental stresses. A comparison was done on the genes th…

0106 biological sciences0301 basic medicinerootsdifferentially expressed genesabiotic stresses differentially expressed genes fruit crops meta-analysis RNA-seq roots transcriptomicsPlant ScienceBiologyQuantitative trait locus01 natural sciencesArticle03 medical and health scienceschemistry.chemical_compoundtranscriptomicsAuxinSettore AGR/07 - Genetica AgrariaBotanyDrug transmembrane transportGeneAbscisic acidEcology Evolution Behavior and Systematicschemistry.chemical_classificationEcologyAbiotic stressBotanyfood and beveragesfruit cropsabiotic stressesSalinitySettore AGR/03 - Arboricoltura Generale E Coltivazioni Arboreemeta-analysis030104 developmental biologychemistryQK1-989RNA-seqFruit tree010606 plant biology & botanyPlants
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Effects of species and soil-nitrogen availability on root system architecture traits - study on a set of weed and crop species

2017

Better managing crop : weed competition in cropping systems while reducing both nitrogen and herbicide inputs is a real challenge that requires a better understanding of crop and weed root architecture in relation to soil-nitrogen availability. An original approach was used which considered the parameters of a simulation model of root architecture as traits to analyse (a) the interspecific diversity of root system architecture, and (b) its response to soil-nitrogen availability. Two greenhouse experiments were conducted using three crop and nine weed species grown at two contrasted concentrations of soil-nitrogen availability. Plant traits were measured to characterise both overall plant gr…

0106 biological sciences2. Zero hungerBiomass (ecology)media_common.quotation_subjectfood and beverages04 agricultural and veterinary sciencesRoot systemInterspecific competition15. Life on landBiology01 natural sciencesCompetition (biology)CropAgronomy040103 agronomy & agricultureTrait0401 agriculture forestry and fisheriesBiological regulationWeedAgronomy and Crop Science010606 plant biology & botanymedia_commonAnnals of Applied Biology
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Ornacitrus: Citrus plants (Citrus spp.) as ornamentals

2019

Abstract The industrial production of citrus plants for ornamental use (ornacitrus) began in Italy at the end of the 1960s due to the need for many citrus nurseries to adapt their activities in a time of crisis for citriculture. Nowadays, the ornamental citrus nursery sector is a well-established industry in many European countries such as Portugal, Spain, Greece, and southern Italy. In Italy, nursery production of ornamental citrus plants has become prominent due to the gradual shutdown of many commercial citrus orchards. Currently, Italy maintains its leadership with more than 5.5 million ornacitrus plants produced annually. Ornamental citrus production regards mainly different cultivars …

0106 biological sciencesAgroforestryIndustrial productionnursery managementPlant culture04 agricultural and veterinary sciencesHorticulturerootstocks01 natural sciencescitrus spp.SB1-1110Citrus spp. nursery management potted ornamental plants rootstocks varietySettore AGR/03 - Arboricoltura Generale E Coltivazioni ArboreevarietyGeographyOrnamental plantCultivarpotted ornamental plants0405 other agricultural sciencesStrengths and weaknesses010606 plant biology & botany040502 food scienceFolia Horticulturae
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Soil legacy determines arbuscular mycorrhizal spore bank and plant performance in the low Arctic

2020

AbstractHuman impact is rapidly changing vegetation globally. The effect of plant cover that no longer exists in a site may still affect the development of future vegetation. We focused on a little studied factor—arbuscular mycorrhizal (AM) fungus spore bank—and its effect on three test plant species. In a low Arctic field site, plots were maintained for 6 years, devoid of any vegetation or with a Solidago virgaurea monoculture cover. We analysed the AM fungal morphospecies composition and identified 21 morphospecies in the field plots. The AM morphospecies community was dominated by members of Acaulosporaceae. Monoculturing under low Arctic field conditions changed the soil AM spore commun…

0106 biological sciencesAnthoxanthum odoratumAcaulosporaceaePlant ScienceAM spore bankBiologyPlant Roots01 natural sciencesPotentilla crantziiSolidago virgaureaSoil03 medical and health sciencesAcaulosporaceaeMycorrhizaeBotanymykorritsasienetGeneticsHumansmykorritsaMolecular BiologySoil MicrobiologyEcology Evolution Behavior and Systematicsitiöt030304 developmental biologyarktinen aluemaaperä0303 health sciencesArctic RegionsfungiGeneral MedicineVegetationbiology.organism_classificationSolidagoSporeSolidago virgaureaPlant coverOriginal ArticlemonoculturingasterikasvitMonoculturingMonoculture010606 plant biology & botanyMycorrhiza
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Grape root as habitat: overwintering and population dynamics of grape phylloxera (Daktulosphaira vitifoliae Fitch) in temperate climate viticulture

2016

Background and Aims Daktulosphaira vitifoliae Fitch (grape phylloxera, Phylloxeridae) is one of the most devastating pests in viticulture, mainly because of their root feeding activity. Up to today fundamental relations between belowground habitat and population dynamics remain unclear. In this 2-year study, we investigated the relations between grape phylloxera population and phenotypic traits of roots and feedings sites. Methods and Results We extracted root and soil samples frequently of two closely related mature rootstocks [Vitis berlandieri × V. riparia (cvs 5C and 125AA)]. We quantified and characterised larval population and crowding and assessed root gall pigmentation, root morphol…

0106 biological sciencesAphideducation.field_of_studybiologyfungiPopulationHorticulturePhylloxeridaebiology.organism_classification01 natural sciences010602 entomologyHorticultureGallViticultureRootstockeducationPhylloxeraOverwintering010606 plant biology & botanyAustralian Journal of Grape and Wine Research
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Optimized Application of Biome-BGC for Modeling the Daily GPP of Natural Vegetation Over Peninsular Spain

2018

A methodology for improving the application of Biome-BGC in peninsular Spain was developed focusing on the optimization of the rooting depth (zroot), which is not available for the study area on a spatially distributed basis. The optimal zroot was identified by comparing daily gross primary production (GPP) simulations with varying zroot to GPP estimations from a production efficiency model previously optimized for and validated in the study area. The methodology was first tested in four eddy covariance (EC) sites representative of Mediterranean ecosystems and next applied at a regional scale to the whole study area. As a result, daily GPP simulated maps for the 2005-2012 period and an opti…

0106 biological sciencesAtmospheric Science010504 meteorology & atmospheric sciencesEcologyBiomePaleontologySoil ScienceForestryBIOME-BGCAquatic SciencePEM010603 evolutionary biology01 natural sciencesremote sensingRemote sensing (archaeology)Spainrooting depthEnvironmental sciencePhysical geographyGPP0105 earth and related environmental sciencesWater Science and Technology
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Scale dependence of species–area relationships is widespread but generally weak in Palaearctic grasslands

2021

Questions: Species–area relationships (SARs) are fundamental for understanding biodiversity patterns and are generally well described by a power law with a constant exponent z. However, z-values sometimes vary across spatial scales. We asked whether there is a general scale dependence of z-values at fine spatial grains and which potential drivers influence it. Location: Palaearctic biogeographic realm. Methods: We used 6,696 nested-plot series of vascular plants, bryophytes and lichens from the GrassPlot database with two or more grain sizes, ranging from 0.0001 m² to 1,024 m² and covering diverse open habitats. The plots were recorded with two widespread sampling approaches (rooted presenc…

0106 biological sciencesBeta diversityGLM generalized linear model grasslands SAR species area relationship333.7: Landflächen NaturerholungsgebieteGrassPlotBeta diversityPlant Science010603 evolutionary biology01 natural sciencesSpecies-area curveGrasslandPower lawScale dependencevegetationComputingMilieux_MISCELLANEOUSspecies–area relationshipRooted presenceSpecies–area relationshipgeographygeography.geographical_feature_categoryVegetationpower lawEcologyEcologyShoot presenceVegetation15. Life on landZ-valueGrasslandrooted presencePalaearctic580: Pflanzen (Botanik)scale dependencez-valueSettore BIO/03 - Botanica Ambientale E Applicatabeta diversity[SDE.BE]Environmental Sciences/Biodiversity and EcologygrasslandHeterogeneityScale (map)shoot presence010606 plant biology & botany
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The Effect of Soil Volume Availability on Opuntia ficus-indica Canopy and Root Growth

2020

The study investigated the effect of soil volume restriction on the below- and above-ground growth of Opuntia ficus-indica through understanding the limit imposed by root confinement via different soil volumes on root and canopy architecture and growth. In 2014, one-year-old O. ficus-indica cladodes were planted in five different soil volumes (50, 33, 18, 9 and 5 L). The cladode and roots of each sampled plants were measured and weighed every six months

0106 biological sciencesCanopyrootsStarchRoot systemrestricted soil volume01 natural sciencescomplex mixtureslcsh:Agriculturechemistry.chemical_compoundDry weightSoil volumeCladodesbiologyfungilcsh:Sfood and beverages04 agricultural and veterinary sciencesplant growthbiology.organism_classificationsustainabilitySettore AGR/03 - Arboricoltura Generale E Coltivazioni ArboreeHorticultureVolume (thermodynamics)chemistryRootCactus040103 agronomy & agriculture0401 agriculture forestry and fisheriescladodesAgronomy and Crop ScienceCladode010606 plant biology & botanyAgronomy
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Cytosolic pH regulates root water transport during anoxic stress through gating of aquaporins.

2003

Flooding of soils results in acute oxygen deprivation (anoxia) of plant roots during winter in temperate latitudes, or after irrigation1, and is a major problem for agriculture. One early response of plants to anoxia and other environmental stresses is downregulation of water uptake due to inhibition of the water permeability (hydraulic conductivity) of roots (Lpr)2,3,4,5. Root water uptake is mediated largely by water channel proteins (aquaporins) of the plasma membrane intrinsic protein (PIP) subgroup6,7,8. These aquaporins may mediate stress-induced inhibition of Lpr2,4,9 but the mechanisms involved are unknown. Here we delineate the whole-root and cell bases for inhibition of water upta…

0106 biological sciencesCell signalingMagnetic Resonance SpectroscopyCell RespirationArabidopsisAquaporin[SDV.BC]Life Sciences [q-bio]/Cellular BiologyGatingBiologyAquaporins01 natural sciencesPlant RootsPermeability03 medical and health sciencesXenopus laevisCytosolAnimalsComputingMilieux_MISCELLANEOUS030304 developmental biologyPlant Diseases0303 health sciencesMultidisciplinaryWater transportMajor intrinsic proteinsWaterBiological TransportHydrogen-Ion Concentration6. Clean waterOxygenCytosolBiochemistryBiophysicsOocytesMembrane channelSignal transductionProtonsABSORPTION HYDRIQUEIon Channel Gating010606 plant biology & botanyNature
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Stimulation of Defense Reactions in Medicago truncatula by Antagonistic Lipopeptides from Paenibacillus sp. Strain B2

2010

ABSTRACT With the aim of obtaining new strategies to control plant diseases, we investigated the ability of antagonistic lipopolypeptides (paenimyxin) from Paenibacillus sp. strain B2 to elicit hydrogen peroxide (H 2 O 2 ) production and several defense-related genes in the model legume Medicago truncatula . For this purpose, M. truncatula cell suspensions were used and a pathosystem between M. truncatula and Fusarium acuminatum was established. In M. truncatula cell cultures, the induction of H 2 O 2 reached a maximum 20 min after elicitation with paenimyxin, whereas concentrations higher than 20 μM inhibited H 2 O 2 induction and this was correlated with a lethal effect. In plant roots in…

0106 biological sciencesChalcone synthaseCell Culture TechniquesPhenylalanine ammonia-lyase01 natural sciencesApplied Microbiology and BiotechnologyPlant RootsMicrobiologyCell wall03 medical and health sciencesPathosystemPaenibacillusLipopeptidesPlant MicrobiologyFusariumGene Expression Regulation Plant030304 developmental biology[SDV.EE]Life Sciences [q-bio]/Ecology environment0303 health sciencesEcologybiologyfungiPANIBACILLUS SP. STRAIN B2food and beveragesHydrogen Peroxidebiology.organism_classificationMedicago truncatulaCoculture TechniquesInvertaseChitinasebiology.proteinMEDICAGO TRUNCATULAPaenibacillus010606 plant biology & botanyFood ScienceBiotechnology
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