Search results for "roots"

showing 10 items of 380 documents

Arabidopsis copper transport protein COPT2 participates in the crosstalk between iron deficiency responses and low phosphate signaling

2013

[EN] Copper and iron are essential micronutrients for most living organisms because they participate as cofactors in biological processes, including respiration, photosynthesis, and oxidative stress protection. In many eukaryotic organisms, including yeast (Saccharomyces cerevisiae) and mammals, copper and iron homeostases are highly interconnected; yet, such interdependence is not well established in higher plants. Here, we propose that COPT2, a high-affinity copper transport protein, functions under copper and iron deficiencies in Arabidopsis (Arabidopsis thaliana). COPT2 is a plasma membrane protein that functions in copper acquisition and distribution. Characterization of the COPT2 expr…

PhysiologyArabidopsisPlant SciencePlant RootsMembranes Transport and BioenergeticsGene Expression Regulation PlantArabidopsisThalianaHomeostasisArabidopsis thalianaSLC31 ProteinsGene-expressionCation Transport ProteinsChlorosisbiologyRevealsIron DeficienciesMetal homeostasisPlantsPlants Genetically ModifiedUp-RegulationTransport proteinPhenotypeBiochemistrySignal TransductionIronRecombinant Fusion ProteinsSaccharomyces cerevisiaechemistry.chemical_elementSaccharomyces cerevisiaeModels BiologicalPhosphatesEthyleneGeneticsmedicineBIOQUIMICA Y BIOLOGIA MOLECULARFamilyIron deficiency (plant disorder)Arabidopsis ProteinsBiological TransportRoot elongationSequence Analysis DNAbiology.organism_classificationmedicine.diseaseCopperPlant LeavesAcquisitionchemistrySeedlingsStarvationMutationCopper deficiencyCopper
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The Arabidopsis COPT6 Transport Protein Functions in Copper Distribution Under Copper-Deficient Conditions

2013

Copper (Cu), an essential redox active cofactor, participates in fundamental biological processes, but it becomes highly cytotoxic when present in excess. Therefore, living organisms have established suitable mechanisms to balance cellular and systemic Cu levels. An important strategy to maintain Cu homeostasis consists of regulating uptake and mobilization via the conserved family of CTR/COPT Cu transport proteins. In the model plant Arabidopsis thaliana, COPT1 protein mediates root Cu acquisition, whereas COPT5 protein functions in Cu mobilization from intracellular storage organelles. The function of these transporters becomes critical when environmental Cu bioavailability diminishes. Ho…

PhysiologyMolecular Sequence DataSaccharomyces cerevisiaeMutantArabidopsisSaccharomyces cerevisiaePlant SciencePlant RootsCofactorCell membraneGene Expression Regulation PlantArabidopsisOrganellemedicineHomeostasisAmino Acid SequenceSLC31 ProteinsbiologyArabidopsis ProteinsMembrane transport proteinCell MembraneGenetic Complementation TestMembrane Transport ProteinsBiological TransportCell BiologyGeneral MedicinePlants Genetically Modifiedbiology.organism_classificationUp-RegulationTransport proteinCell biologyPlant LeavesMutagenesis Insertionalmedicine.anatomical_structureBiochemistrySeedsbiology.proteinPlant Vascular BundleSequence AlignmentCopperPlant ShootsPlant and Cell Physiology
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Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.

2013

This work contributes to unraveling the role of the phosphorylated pathway of serine (Ser) biosynthesis in Arabidopsis (Arabidopsis thaliana) by functionally characterizing genes coding for the first enzyme of this pathway, 3-phosphoglycerate dehydrogenase (PGDH). We identified two Arabidopsis plastid-localized PGDH genes (3-PGDH and EMBRYO SAC DEVELOPMENT ARREST9 [EDA9]) with a high percentage of amino acid identity with a previously identified PGDH. All three genes displayed a different expression pattern indicating that they are not functionally redundant. pgdh and 3-pgdh mutants presented no drastic visual phenotypes, but eda9 displayed delayed embryo development, leading to aborted emb…

PhysiologyMutantMolecular Sequence DataArabidopsisPlant SciencePlant RootsGene Expression Regulation EnzymologicSerineBiochemistry and MetabolismGene Expression Regulation PlantComplementary DNAArabidopsisGeneticsSerineArabidopsis thalianaMetabolomicsAmino Acid SequencePlastidsPhosphorylationGenePhosphoglycerate DehydrogenasePhylogenyTapetumMicroscopy ConfocalbiologySequence Homology Amino AcidArabidopsis ProteinsReverse Transcriptase Polymerase Chain ReactionGenetic Complementation Testfood and beveragesPlant Components Aerialbiology.organism_classificationPlants Genetically ModifiedPhenotypeIsoenzymesBiochemistryMultigene FamilyMutationSeedsPollenPlant physiology
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Dynamic of the genetic structure of bacterial and fungal communities at different developmental stages of Medicago truncatula Gaertn. cv. Jemalong li…

2006

International audience; The genetic structure of bacterial and fungal communities was characterized in the rhizosphere of Medicago truncatula Gaertn. cv. Jemalong line J5 at five developmental stages (three vegetative and two reproductive stages), and in three compartments (bulk soil, rhizosphere soil and root tissues). The genetic structure of microbial communities was determined by cultivation-independent methods using directly extracted DNA that was characterized by automated ribosomal intergenic spacer analysis (ARISA). Principal component analyses (PCA) indicate that, for all developmental stages, the genetic structure of microbial communities differed significantly by compartment, wit…

PhysiologyRibosomal Intergenic Spacer analysisBulk soilPopulation geneticsPlant ScienceBiologyPlant RootsRhizobiaSoil03 medical and health sciencesSymbiosisMycorrhizaeMedicago truncatulaBotanyMICROBIAL COMMUNITIESEcosystem030304 developmental biology2. Zero hunger0303 health sciencesRhizosphereGENETIC STRUCTUREBacteriaSYMBIOTIC ASSOCIATIONSMEDICAGO TRUNCULATAPLANT DEVELOPMENTFungiANALYSE COMPOSANTE PRINCIPALE04 agricultural and veterinary sciences15. Life on landbiology.organism_classificationMedicago truncatula[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacySTADE DEVELOPPEMENTGenetic structure040103 agronomy & agriculture0401 agriculture forestry and fisheriesRhizome
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Detection of a plant enzyme exhibiting chlorogenate-dependant caffeoyltransferase activity in methanolic extracts of arbuscular mycorrhizal tomato ro…

2012

When Glomus intraradices-colonised tomato roots were extracted in methanol at 6 degrees C, chlorogenic acid (5-caffeoylquinic acid), naturally present in the extract, was slowly converted by transesterification into methyl caffeate. The progress of the reaction could be monitored by HPLC. The reaction only occurred when the ground roots were left in contact with the hydro-alcoholic extract and required the presence of 15-35% water in the mixture. When the roots were extracted in ethanol, chlorogenic acid was transformed to ethyl caffeate in the same conditions. The reaction was also detected in Glomus mosseae-colonised tomato root extracts. It was also detectable in non-mycorrhizal root ext…

Physiology[SDV]Life Sciences [q-bio]Arbuscular mycorrhizal fungiPlant SciencePlant RootsSubstrate SpecificityACBIOSYNTHESISchemistry.chemical_compoundTRANSFERASESolanum lycopersicumMycorrhizaeMethyl caffeateSWEET-POTATO ROOTSFood scienceEnzyme InhibitorsGlomusChromatography High Pressure LiquidPlant ProteinsbiologyTemperaturePlant physiologyfood and beveragesChlorogenic acidBiochemistryFUNGUSCOFFEE[SDE]Environmental SciencesGENESMETABOLISMCaffeoyltransferaseTomatoCaffeic AcidsChlorogenic acidTransferasesGenetics[SDV.BV]Life Sciences [q-bio]/Vegetal BiologyEnzyme AssaysEthanolEsterificationPlant ExtractsfungiEthyl caffeatePlant Components Aerialbiology.organism_classificationRootsEnzyme assayEnzyme ActivationPhenylmethylsulfonyl FluorideTransesterificationchemistrybiology.proteinMethanolCAFFEIC ACIDCATALYZED SYNTHESIS
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Deploying Genome Editing Tools for Dissecting the Biology of Nut Trees

2019

Walnuts are among the most important nut crops grown in temperate regions of the world. Commercial production in California, and increasingly worldwide, relies on only few clonally grafted scion genotypes, particularly “Chandler,” and more recently clonally propagated disease-resistant rootstocks. Diseases, nematodes, insect pests, abiotic stresses, and other nutritional and environmental factors, can reduce walnut productivity and quality, affecting grower profitability. The California Walnut Breeding Program at UC Davis has developed and released scion cultivars and rootstocks to help address some of these problems. Sequencing of the walnut genome is expected to speed walnut breeding by f…

Phytoene desaturaseCRISPR-Cas9; gene-editing; gRNA; nut crops; oxidative stress; phytoene desaturase; plastid healthBreeding programnut cropgRNAgene-editinglcsh:TX341-641HorticultureManagement Monitoring Policy and LawBiologyGenomeCropGenome editingSettore AGR/07 - Genetica Agrariaoxidative stressGlobal and Planetary Changeoxidative strelcsh:TP368-456Ecologybusiness.industryfungifood and beveragesPhenotypic traitBiotechnologySettore AGR/03 - Arboricoltura Generale E Coltivazioni Arboreelcsh:Food processing and manufacturephytoene desaturaseplastid healthCRISPR-Cas9nut cropsRootstockbusinesslcsh:Nutrition. Foods and food supplyAgronomy and Crop ScienceHickory nutFood Science
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Localized versus systemic effect of arbuscular mycorrhizal fungi on defence responses to Phytophthora infection in tomato plants

2002

Development of biological control for plant diseases is accepted as a durable and environmentally friendly alternative for agrochemicals. Arbuscular mycorrhizal fungi (AMF), which form symbiotic associations with root systems of most agricultural, horticultural and hardwood crop species, have been suggested as widespread potential bioprotective agents. In the present study the ability of two AMF (Glomus mosseae and Glomus intraradices) to induce local or systemic resistance to Phytophthora parasitica in tomato roots have been compared using a split root experimental system. Glomus mosseae was effective in reducing disease symptoms produced by P. parasitica infection, and evidence points to …

Phytophthora0106 biological sciencesGlycoside HydrolasesPhysiologyPlant SciencePlant Roots01 natural sciences[SDV.BV.BOT] Life Sciences [q-bio]/Vegetal Biology/BotanicsSolanum lycopersicumSymbiosisBotanyMycorrhizaSymbiosisPhycomycetesComputingMilieux_MISCELLANEOUSGlomusPlant Diseases2. Zero hungerbiologySuperoxide Dismutasebeta-GlucosidaseChitinasesfungiFungifood and beveragesGlucan 13-beta-Glucosidase04 agricultural and veterinary sciences[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/BotanicsPhytophthora nicotianaebiology.organism_classificationImmunity InnateIsoenzymesOxidative StressChitinase040103 agronomy & agriculturebiology.protein0401 agriculture forestry and fisheriesPhytophthoraSolanaceaeSignal TransductionCONTROLE DE MALADIES010606 plant biology & botanyJournal of Experimental Botany
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Effect of rootstock on growth, yield and fruit characteristics in cv 'Bianca' pistachio (Pistacia vera L.) trees

2005

This paper, following preliminary field evaluation trials started in 1993, reports a study on the effect of eight different in vitro-propagated clonal rootstocks (P. atlantica and P. integerrima) and one seedling rootstock (P. terebinthus) on the vegetative and productive behaviour of pistachio cultivar 'Bianca'. The trees, budded in 1991, were grown using standard cultural practices for dry-land farming in a sandy clay loam soil, located inland in Sicily. On average, clones of P. integerrima (I-6 and I-2) were the most vigorous rootstocks. Clones of P. atlantica had intermediate vigour. Rootstock significantly affect yield but not fruit weight, kernel to nut ratio, splitting and blanking p…

Pistacia vera P . integerrima P . atlantica P . terebinthus rootstocks growth yield fruit characteristics leaf mineral content.Settore AGR/03 - Arboricoltura Generale E Coltivazioni ArboreeSettore AGR/13 - Chimica Agraria
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Root vacuolar sequestration and suberization are prominent responses of Pistacia spp. rootstocks during salinity stress

2021

Abstract Understanding the mechanisms of stress tolerance in diverse species is needed to enhance crop performance under conditions such as high salinity. Plant roots, in particular in grafted agricultural crops, can function as a boundary against external stresses in order to maintain plant fitness. However, limited information exists for salinity stress responses of woody species and their rootstocks. Pistachio (Pistacia spp.) is a tree nut crop with relatively high salinity tolerance as well as high genetic heterogeneity. In this study, we used a microscopy‐based approach to investigate the cellular and structural responses to salinity stress in the roots of two pistachio rootstocks, Pis…

Plant ScienceBiologyBiochemistry Genetics and Molecular Biology (miscellaneous)salinity tolerancePistacia integerrimasuberizationSuberinExodermispistachio rootstockEcology Evolution Behavior and Systematicsvacuolar sequestrationEcologyPistaciaexodermisfungiBotanyXylemfood and beveragesbiology.organism_classificationendodermisSettore AGR/03 - Arboricoltura Generale E Coltivazioni ArboreeSalinityHorticultureQK1-989EndodermisRootstockendodermis exodermis pistachio rootstock salinity tolerance suberization vacuolar sequestrationPlant Direct
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Crotonic acid as a bioactive factor in carrot seeds (Daucus carota L.)

2004

Water extracts from the carrot seed (Daucus carota L.) var. Perfekcja exhibit plant growth inhibitory properties against cress, cucumber, onion and carrot in a dose-dependant manner. This property results from the action of low-and high-molecular components of the extract. The low-molecular component was identified as crotonic acid ((E)-2-butenoic acid). Its presence was also confirmed in other late varieties of carrot. The determined strong herbicidal properties of crotonic acid and its availability after release to soil combined with its high level in seeds suggest that it might be considered as an allelopathic and autotoxic factor in the seeds.

Plant growthMagnetic Resonance SpectroscopyumbelliferaePlant ScienceHorticulturePlant RootsBiochemistrychemistry.chemical_compoundautotoxic activityOnionsCrotonic acidBotanyBioassayherbicidal activityMolecular BiologyAllelopathyDose-Response Relationship DrugMolecular StructurebiologyHerbicidesPlant ExtractsLiliaceaefood and beveragesGeneral MedicinePesticidebiology.organism_classificationHypocotylDaucus carotaHorticulturechemistrycrotonic acidCrotonatesallelopathyBrassicaceaeSeedsCucumis sativusDaucus carotaPhytochemistry
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