Search results for "script"
showing 10 items of 5143 documents
Theoretical studies of HIV-1 reverse transcriptase inhibition
2012
Computational methods for accurately calculating the binding affinity of a ligand for a protein play a pivotal role in rational drug design. We herein present a theoretical study of the binding of five different ligands to one of the proteins responsible for the human immunodeficiency virus type 1 (HIV-1) cycle replication; the HIV-1 reverse transcriptase (RT). Two types of approaches are used based on molecular dynamics (MD) simulations within hybrid QM/MM potentials: the alchemical free energy perturbation method, FEP, and the pathway method, in which the ligand is physically pulled away from the binding site, thus rendering a potential of mean force (PMF) for the binding process. Our com…
STAT proteins: From normal control of cellular events to tumorigenesis
2003
Signal transducers and activators of transcription (STAT) proteins comprise a family of transcription factors latent in the cytoplasm that participate in normal cellular events, such as differentiation, proliferation, cell survival, apoptosis, and angiogenesis following cytokine, growth factor, and hormone signaling. STATs are activated by tyrosine phosphorylation, which is normally a transient and tightly regulates process. Nevertheless, several constitutively activated STATs have been observed in a wide number of human cancer cell lines and primary tumors, including blood malignancies and solid neoplasias. STATs can be divided into two groups according to their specific functions. One is …
Genome-wide chromosomal association of Upf1 is linked to Pol II transcription in Schizosaccharomyces pombe
2021
AbstractAlthough the RNA helicase Upf1 has hitherto been examined mostly in relation to its cytoplasmic role in nonsense mediated mRNA decay (NMD), here we report high-throughput ChIP data indicating genome-wide association of Upf1 with active genes in Schizosaccharomyces pombe. This association is RNase sensitive and it correlates with Pol II transcription and mRNA expression levels. While changes in Pol II occupancy were detected at only some genes in a Upf1-deficient (upf1Δ) strain, there is an increased Ser2 Pol II signal at all highly transcribed genes examined by ChIP-qPCR. Furthermore, upf1Δ cells are hypersensitive to the transcription elongation inhibitor 6-azauracil and display Po…
Differentiation of the Disease Caused by Aphanomyces cochlioides and Girth Scab on Sugar Beet Roots – a Review
2017
Severe symptoms of root rot on sugar beet have been observed in Poland and Germany since 2001. The symptom classification suggested girth scab as it was mistakenly classified on the basis of current classification, e.g. in LIZ. However, the cause of the disease was Aphanomyces cochlioides infection, not Streptomyces spp. According to these findings we cannot call the symptoms caused by A. cochlioides as ‘girth scab’. The typical scab (girth scab) symptoms can be promoted by A. cochlioides infections. In many cases, A. cochlioides developed at the beginning of the season, during the seedling stage. Its further development was due to rainfall and was not routinely recognised in disease-change…
Characterization of DrosophilaHemoglobin
2002
In contrast to previous assumptions, the fruit fly Drosophila melanogaster possesses hemoglobin. This respiratory protein forms a monomer of about 17 kDa that is not exported into the hemolymph. Recombinant Drosophila hemoglobin displays a typical hexacoordinated deoxy spectrum and binds oxygen with an affinity of 0.12 torr. Four different hemoglobin transcripts have been identified, which are generated by two distinct promoters of the hemoglobin (glob1) gene but are identical in their coding regions. Putative binding sites for hypoxia-regulated transcription factors have been identified in the gene. Hemoglobin synthesis in Drosophila is mainly associated with the tracheal system and the fa…
Drosophila melanogaster overexpression FAS live longer
2018
FAS and FAS ligand is critical in the control of the extension of extrinsic pathway of apoptosis. In previous studies we have performed transcriptomics peripheral blood cells from centenarians, octogenarians and young persons and we found over expression in centenarians of the FAS receptor. To confirm the role of FAS ligand in longevity across animal species, we have generated Drosophila melanogaster that over expresses this gene using the GAL4-UAS technique. The results show that flies overexpressing FAS increase maximal longevity in twelve percent and average longevity in six percent. Therefore, we confirm that FAS is related to longevity flight.
An insect brain computational model inspired by Drosophila melanogaster: architecture description
2010
The fruit fly Drosophila melanogaster is an extremely interesting insect because it shows a wealth of complex behaviors, despite its small brain. Nowadays genetic techniques allow to knock out the function of defined parts or genes in the Drosophila brain. Together with specific mutants which show similar defects in those parts or genes, hypothesis about the functions of every single brain part can be drawn. Following these experiments, a computational model of the fly Drosophila has been designed with a view to its robotic implementation.
ID: 213
2015
The epithelium is the main entry point for many viruses, but the processes that protect barrier surfaces against viral infections are incompletely understood. Here we identified interleukin 22 (IL-22) produced by innate lymphoid cell group 3 (ILC3) as an amplifier of signaling via interferon- λ (IFN- λ ) , a synergism needed to curtail the replication of rotavirus, the leading cause of childhood gastroenteritis. Cooperation between the receptor for IL-22 and the receptor for IFN- λ , both of which were ‘preferentially’ expressed by intestinal epithelial cells (IECs), was required for optimal activation of the transcription factor STAT1 and expression of interferon-stimulated genes (ISGs). T…
Quantitative descriptors in myopic eyes
2020
La prevalencia de la miopía ha demostrado ser mayor entre la población con una educación superior. Se cree que el tiempo dedicado a actividades de trabajo cercano tiene un papel en dicha asociación entre la miopía y el nivel educativo alcanzado. De hecho, el tiempo dedicado al trabajo cercano y su intensidad, especialmente la lectura continua, han demostrado aumentar las probabilidades de miopía en niños. Los estudiantes universitarios constituyen un grupo de población joven expuesto a mucho trabajo cercano prolongado por lo que que tiene un riesgo especial de desarrollo y progresión de la miopía durante sus estudios. Esta investigación tuvo como objetivo caracterizar el ojo miope mediante …
Data from: Factors associated with first- versus second-generation long-acting antipsychotics prescribed under ordinary clinical practice in Italy
2019
Background. For many years, long-acting intramuscular (LAI) antipsychotics have been prescribed predominantly to chronic and severe patients, as a last resort when other treatments failed. Recently, a broader and earlier use of LAIs, particularly second-generation LAIs, has been emphasized. To date, few studies attempted to frame how this change in prescribing took place in real-world practice. Therefore, this study aimed to describe the clinical features of patients prescribed with LAIs, and to explore possible prescribing differences between first- and second-generations LAIs under ordinary clinical practice in Italy. Methods. The STAR Network "Depot" Study is an observational, longitudin…