Search results for "sequence data"

showing 10 items of 1952 documents

Molecular characterization of the zerknüllt region of the Antennapedia complex of D. subobscura.

1995

We have characterized at the molecular level the zerknullt (zen) region of the Drosophila subobscura Antennapedia complex. The sequence comparison between D. subobscura and D. melanogaster shows an irregular distribution of the conserved and diverged regions, with the homeobox and a putative activating domain completely conserved. Comparisons of the promoter sequence and pattern of expression of the gene during development suggest that the regulation of zen has been conserved during evolution. The conservation of zen expression in a subpopulation of the polar cells indicates the existence of an important role in such cells. We describe a transitory segmented pattern of expression of zen in …

Molecular Sequence DataPair-rule geneGenes InsectAntennapediaGenomeChromosomesGeneticsMelanogasterAnimalsDrosophila ProteinsAmino Acid SequenceRNA MessengerCloning MolecularPromoter Regions GeneticGeneGenetics (clinical)In Situ HybridizationGeneticsHomeodomain ProteinsbiologyBase SequencefungiGenes HomeoboxChromosomeChromosome MappingGene Expression Regulation DevelopmentalNuclear Proteinsbiology.organism_classificationDrosophila subobscuraDNA-Binding ProteinsRepressor ProteinsInsect HormonesAntennapedia Homeodomain ProteinHomeoboxDrosophilaSequence AlignmentTranscription FactorsChromosoma
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Plasmid-encoded anthranilate synthase (TrpEG) in Buchnera aphidicola from aphids of the family pemphigidae

1999

Aphids are dependent on an intracellular symbiont (Buchnera aphidicola, Proteobacteria) for normal growth and reproduction (7, 19, 45). The bacteria reside in specialized cells in the aphid hemocele and are transmitted maternally through infection of eggs or embryos (11, 26). Phylogenetic studies have revealed two major characteristics of the evolutionary history of the association (37, 39); (i) the symbiosis had a single origin, dated about 150 million to 250 million years ago; and (ii) host and symbiont lineages have since diverged strictly in parallel. The association, like other symbioses in insects feeding on restricted and unbalanced diets, is thought to have a nutritional basis (5–7,…

Molecular Sequence DataPemphigus spyrothecaePolymerase Chain ReactionApplied Microbiology and BiotechnologyEvolution MolecularPlasmidPhylogeneticsInvertebrate MicrobiologyAnimalsAmino Acid SequenceRepliconCloning MolecularSymbiosisPhylogenyAnthranilate SynthaseDNA PrimersGeneticsAphidBacteriaBase SequenceSequence Homology Amino AcidEcologybiologyfood and beveragesAphididaebiochemical phenomena metabolism and nutritionPhysical Chromosome Mappingbiology.organism_classificationBiochemistryAphidsbiology.proteinAnthranilate synthaseBuchneraPlasmidsFood ScienceBiotechnology
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Acquired C1 inhibitor (C1-INH) deficiency type II. Replacement therapy with C1-INH and analysis of patients' C1-INH and anti-C1-INH autoantibodies

1989

Abstract The response of two patients with autoantibody-mediated C1-inhibitor (C1-INH) deficiency to replacement therapy with C1-INH was studied over a period of 3 d. In patient 1 an acute attack of angioedema was successfully managed by infusion of 1,000 U of C1-INH concentrate. C1-INH function returned to normal levels within 30 min, while CH50 and C4 peaked after 6-7 h and C1 hemolytic activity reached 50-60% of normal after 3 d. Immediately after the injection an increase in C1-INH-anti-C1-INH complexes was observed. Based on NH2-terminal sequence analysis of the patients' Mr 96,000 C1-INH, it is concluded that this fragment is generated after cleavage of C1-INH in its active site by on…

Molecular Sequence DataPharmacologyComplement C1 Inactivator ProteinsEpitopeC1-inhibitorAutoimmune DiseasesAntibody SpecificityImmunopathologyBlood plasmamedicineHumansheterocyclic compoundsAmino Acid SequenceAngioedemaInfusions IntravenousAutoantibodiesAngioedemabiologybusiness.industryAutoantibodyAntibody titerGeneral Medicinebiochemical phenomena metabolism and nutritionrespiratory systembacterial infections and mycosesrespiratory tract diseasesImmunologybiology.proteinmedicine.symptomAntibodybusinessResearch Article
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Mapping of a binding site for ATP within the extracellular region of the Torpedo nicotinic acetylcholine receptor beta-subunit.

1997

Using 2,8,5'-[H-3]ATP as a direct photoaffinity label for membrane-bound nicotinic acetylcholine receptor (nAChR) from Torpedo marmorata, we have identified a binding site for ATP in the extracellular region of the beta-subunit of the receptor. Photolabeling was completely inhibited in the presence of saturating concentrations of nonradioactive ATP, whereas neither the purinoreceptor antagonists suramin, theophyllin, and caffeine nor the nAChR antagonists alpha-bungarotoxin and d-tubocurarine affected the labeling reaction. Competitive and noncompetitive nicotinic agonists and Ca2+ increased the yield of the photoreaction by up to 50%, suggesting that the respective binding sites are allost…

Molecular Sequence DataPhotoaffinity LabelsReceptors NicotinicTorpedoTritiumBiochemistryPeptide Mappingchemistry.chemical_compoundGanglion type nicotinic receptorAdenosine TriphosphateAdenine nucleotideAnimalsChymotrypsinTrypsinAmino Acid SequenceBinding siteBinding SitesbiologyHydrolysisCell MembranePeptide FragmentsNicotinic acetylcholine receptorNicotinic agonistBiochemistrychemistrybiology.proteinAlpha-4 beta-2 nicotinic receptorExtracellular SpaceAdenosine triphosphateSequence AnalysisATP synthase alpha/beta subunitsBiochemistry
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Engineering a 2D protein-DNA crystal.

2005

(Figure Presented) Weaving with DNA: A DNA-binding protein was used to control the structure of a self-assembled 2D crystal. In the absence of protein, four oligonucleotides hybridize to form a Kagome lattice of interwoven double helices with p3 symmetry (see image). Addition of protein RuvA during assembly changes the symmetry and connectivity to give a DNA-protein crystal with an approximately square unit cell. © 2005 Wiley-VCH Verlag GmbH and Co. KGaA.

Molecular Sequence DataProtein dnaPlasma protein bindingCatalysislaw.inventionCrystalNucleic acid thermodynamicschemistry.chemical_compoundlawNanotechnologyBase sequenceCrystallizationOligonucleotide Array Sequence AnalysisDNA CruciformBase SequenceEscherichia coli ProteinsDNA HelicasesNucleic Acid HybridizationGeneral MedicineDNAGeneral ChemistryDNA-Binding ProteinsMicroscopy ElectronCrystallographychemistryBiochemistryCrystallizationDNAProtein BindingAngewandte Chemie (International ed. in English)
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Inhibition of Eimeria tenella CDK-related kinase 2: From target identification to lead compounds.

2010

Apicomplexan parasites encompass several human- and animal-pathogenic protozoans such as Plasmodium falciparum, Toxoplasma gondii, and Eimeria tenella. E. tenella causes coccidiosis, a disease that afflicts chickens, leading to tremendous economic losses to the global poultry industry. The considerable increase in drug resistance makes it necessary to develop new therapeutic strategies against this parasite. Cyclin-dependent kinases (CDKs) are key molecules in cell-cycle regulation and are therefore prominent target proteins in parasitic diseases. Bioinformatics analysis revealed four potential CDK-like proteins, of which one—E. tenella CDK-related kinase 2 (EtCRK2)—has already been charact…

Molecular Sequence DataProtozoan ProteinsBiochemistryEimeriaArticleAdenosine TriphosphateCyclin-dependent kinaseDrug Discoveryparasitic diseasesAnimalsHumansComputer SimulationHomology modelingAmino Acid SequenceGeneral Pharmacology Toxicology and PharmaceuticsProtein Kinase InhibitorsPharmacologyVirtual screeningBinding SitesbiologyDrug discoveryKinaseCoccidiosisOrganic ChemistryCyclin-dependent kinase 2Cyclin-Dependent Kinase 2Plasmodium falciparumbiology.organism_classificationMolecular biologyBiochemistrybiology.proteinMolecular MedicineBenzimidazolesChickensSequence AlignmentEimeria tenellaChemMedChem
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A new species of Pythium isolated from the Burgundy region in France.

1998

Pythium nodosum sp. nov. has been isolated from a soil sample taken in the Burgundy region in France. The fungus has spherical to variously shaped proliferating sporangia, smooth-walled oogonia which are crowded with different antheridial branches making a complicated knot around the former, and aplerotic oospores. Morphological and reproductive aspects of Pythium nodosum as well as the PCR of the internal transcribed spacer (ITS1) of the ribosomal nuclear DNA coupled with restriction fragment length polymorphism analysis are described here. The nucleotide sequences of ITS1 encoding 5.8S rRNA is also given.

Molecular Sequence DataPythiumBiologyMicrobiologyDNA RibosomalBotanyGeneticsmedicinePythiumInternal transcribed spacerDNA FungalMolecular BiologySoil MicrobiologyCell NucleusOogoniumBase SequenceSporangiumfood and beveragesRibosomal RNAbiology.organism_classificationmedicine.anatomical_structureAntheridiumOosporeFranceRestriction fragment length polymorphismPolymorphism Restriction Fragment LengthFEMS microbiology letters
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Pythium ornacarpum: a new species with ornamented oogonia isolated from soil in France

1999

Pythium ornacarpum sp. nov. was isolated from a soil sample taken from Genlis in the Burgundy region of France. This species is unique because of its ornamented oogonia which are completely surrounded by antheridial filaments. The fungus is closely related to Pythium echinulatum Matthews. Morphological and reproductive aspects of this species as well as a study by PCR of the sequence of the internal transcribed spacer (ITS1) of the nuclear ribosomal gene and its comparison with related species are described here. The nucleotide sequence of the ITS1 region flaking the 5.8S rRNA of this species and other related species are also given here.

Molecular Sequence DataPythiumDNA RibosomalPolymerase Chain ReactionMicrobiologyBotanyGeneticsPythiumInternal transcribed spacerMolecular BiologyRibosomal DNASoil MicrobiologyBase SequencebiologySporangiumfood and beveragesGenes rRNASequence Analysis DNASpacer DNARibosomal RNAbiology.organism_classificationRNA Ribosomal 5.8SAntheridiumOosporeFranceSequence AlignmentFEMS Microbiology Letters
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A new species of Pythium with filamentous sporangia having pectinolytic activities, isolated in the Burgundy region of France.

2001

A new species, Pythium pectinolyticum (F-83.1), isolated from soil samples taken in the Burgundy region is being described here. This species is characterised by its filamentous non-inflated type of sporangia, smooth-walled mostly catenulate oogonia and very rare antheridia. This fungus is a very slow-growing organism on most of the solid media, but it grows well in liquid media and also on those containing pectin as the sole source of carbon. Morphological features are described here together with the sequences of the internal transcribed spacer 1 region of the nuclear ribosomal DNA of the fungus, its comparison with related species, and its pectinolytic behaviour.

Molecular Sequence DataPythiumFungusMicrobiologyBotanyDNA Ribosomal SpacerGeneticsmedicinePythiumInternal transcribed spacerDNA FungalMolecular BiologyRibosomal DNASoil MicrobiologybiologyOogoniumBase SequenceSporangiumSequence Analysis DNAbiology.organism_classificationmedicine.anatomical_structureRNA RibosomalAntheridiumOosporePectinsFranceSequence AlignmentFEMS microbiology letters
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A new species of Pythium with ornamented oogonia: morphology, taxonomy, internal transcribed spacer region of its ribosomal RNA, and its comparison w…

2006

Pythium spiculum sp. nov. was isolated from soil samples taken in a vineyard in the Burgundian region of France and from different locations in Spain and Portugal. The oomycete has spiny oogonia and does not sporulate readily. It resembles Pythium mamillatum Meurs, but has its own distinguishing characteristics. It also exhibits sickle-shaped as well as spherical appressoria which at times are associated with sex organs like those found in Pythium abappressorium Paulitz and Pythium contiguanum Paul. Sequencing of the internal transcribed spacer region of its nuclear ribosomal DNA and a close look at its morphological characters have now enabled us to describe it as a new species. The intern…

Molecular Sequence DataPythiumMicrobiologyDNA RibosomalBotanyDNA Ribosomal SpacerGeneticsPythiumInternal transcribed spacerMolecular BiologyRibosomal DNAPhylogenySoil MicrobiologyOomycetebiologyBase SequencePythium irregularefood and beveragesGenes rRNASequence Analysis DNAbiology.organism_classificationRNA RibosomalSpainFrancePythium sylvaticumPythium paroecandrumPythium spinosumSequence AlignmentFEMS microbiology letters
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