Search results for "shape"

showing 10 items of 585 documents

Comparative analysis of virtual screening approaches in the search for novel EphA2 receptor antagonists

2015

The EphA2 receptor and its ephrin-A1 ligand form a key cell communication system, which has been found overexpressed in many cancer types and involved in tumor growth. Recent medicinal chemistry efforts have identified bile acid derivatives as low micromolar binders of the EphA2 receptor. However, these compounds suffer from poor physicochemical properties, hampering their use in vivo. The identification of compounds able to disrupt the EphA2-ephrin-A1 complex lacking the bile acid scaffold may lead to new pharmacological tools suitable for in vivo studies. To identify the most promising virtual screening (VS) protocol aimed at finding novel EphA2 antagonists, we investigated the ability of…

Cell signalingDatabases Pharmaceuticaldrug designPharmaceutical ScienceComputational biologyBiologyCrystallography X-RayMolecular Docking SimulationArticleAnalytical Chemistrylcsh:QD241-441Structure-Activity RelationshipUser-Computer Interfacelcsh:Organic chemistryPPI inhibitorsDrug Discoveryshape screeningStructure–activity relationshipPhysical and Theoretical ChemistryReceptorProtein Kinase InhibitorsVirtual screeningMolecular StructureDrug discoveryReceptor EphA2EphA2 antagonistOrganic ChemistryEphrin-A1virtual screeningEPH receptor A2C700Combinatorial chemistryMolecular Docking SimulationUniPR129Chemistry (miscellaneous)Docking (molecular)dockingMolecular Medicinepharmacophore search
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A natural-like synthetic small molecule impairs bcr-abl signaling cascades and induces megakaryocyte differentiation in erythroleukemia cells

2013

Over the past years, we synthesized a series of new molecules that are hybrids of spirocyclic ketones as complexity-bearing cores with bi- and ter-phenyls as privileged fragments. Some of these newly-shaped small molecules showed antiproliferative, pro-apoptotic and differentiating activity in leukemia cell lines. In the present study, to investigate more in depth the mechanisms of action of these molecules, the protein expression profiles of K562 cells treated with or without the compounds IND_S1, MEL_T1, IND_S7 and MEL_S3 were analyzed using two-dimensional gel electrophoresis coupled with mass spectrometry. Proteome comparisons revealed several differentially expressed proteins, mainly r…

Cell signalingProteomeMegakaryocyte differentiationCellular differentiationFusion Proteins bcr-abllcsh:MedicineBiologyProteomicsSmall Molecule Librariesbi- and ter-phenylsantiproliferative pro-apoptotic differentiating activity leukemiaMolecular Cell BiologyChemical BiologyBiomarkers TumorCluster AnalysisHumansnetwork analysiRNA Messengerlcsh:ScienceBiologyCell ShapeMultidisciplinaryGene Expression Regulation LeukemicEffectorSystems Biologylcsh:RleukemiaReproducibility of ResultsHNF4-alphaHematologyMolecular biologyNeoplasm ProteinsChemistrycell differentiationSpectrometry Mass Matrix-Assisted Laser Desorption-IonizationMultivariate AnalysisProteomeMedicineEGR1PROTEOMICSlcsh:QLeukemia Erythroblastic AcuteMedicinal ChemistrySignal transductionK562 CellsMegakaryocytesResearch ArticleSignal TransductionK562 cells
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U937 variant cells as a model of apoptosis without cell disintegration

2012

AbstractThe variant cell line U937V was originally identified by a higher sensitivity to the cytocidal action of tumor necrosis factor alpha (TNFα) than that of its reference cell line, U937. We noticed that a typical morphological feature of dying U937V cells was the lack of cellular disintegration, which contrasts to the formation of apoptotic bodies seen with dying U937 cells. We found that both TNFα, which induces the extrinsic apoptotic pathway, and etoposide (VP-16), which induces the intrinsic apoptotic pathway, stimulated U937V cell death without cell disintegration. In spite of the distinct morphological differences between the U937 and U937V cells, the basic molecular events of ap…

Cell typeProgrammed cell deathBlotting WesternCellApoptosisU937 cellsDNA FragmentationBiologyModels BiologicalBiochemistrymedicineHumansCell ShapeMolecular BiologyU937 cellCytochrome cCytochromes chemic and immune systemsCell BiologyApoptotic bodyCaspase 9MitochondriaCell biologyEnzyme Activationmedicine.anatomical_structureApoptosisCell culturebiology.proteinApoptotic bodiesLymphoma Large B-Cell DiffuseCell disintegrationSignal TransductionResearch ArticleCellular and Molecular Biology Letters
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The effect of cadmium on brain cells in culture

2009

Cadmium is a long-living heavy metal, abundantly present in the environment, which accumulates in the body. In this study, we investigated the effects of cadmium on the expression of molecular chaperones, and of certain cell-specific proteins, in a variety of brain cell types in culture, namely primary cultures of rat cortical neurons and astrocytes, a brain capillary endothelial cell line (RB4E.B cells), and pheochromocytoma cells (PC12), induced or not to differentiate by NGF treatment. The metal induces a dose-dependent increase of Hsp70 in all cell types. Responses to the metal are cell-specific in the case of Hsc70 and Hsp90: i) in astrocytes, as well as in PC12 cells, cadmium has no s…

Cell typecadmium brain cells molecular chaperones PIPPinCell SurvivalCellBlotting Westernchemistry.chemical_elementNerve Tissue ProteinsBiologyPC12 CellsSettore BIO/10 - BiochimicaNerve Growth FactorGeneticsmedicineAnimalsCytoskeletonCell ShapeCells CulturedFluorescent DyesCerebral CortexNeuronsCadmiumBrainEndothelial CellsRNA-Binding ProteinsCell DifferentiationGeneral MedicineCell cycleMolecular biologyHsp70Cell biologyRatsEndothelial stem cellmedicine.anatomical_structurechemistryApoptosisAstrocytesCadmiumMolecular Chaperones
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Cell shaping and microtubules in developing mesophyll of wheat (Triticum aestivum L.)

1990

Differentiated mesophyll cells ofTriticum aestivum (cv. Star) exhibit a lobed outline resembling tube-shaped balloons with almost regularly spaced constrictions. It was shown that these constrictions are probably the result of hoops of wall reinforcements laid down during early stages of cell expansion. It appears that these hoops prevent expansion in the corresponding regions and thus give rise to the peculiar cell shape. The comparatively thin cell walls of the bulges are uniformly reinforced after the lobed shape is established. By using immunofluorescence techniques a change in the pattern of cortical microtubule arrangement was observed which corresponded to the pattern of cell wall de…

Cellular differentiationCellCell BiologyPlant ScienceGeneral MedicineAnatomyBiologyCell wallmedicine.anatomical_structureMicrotubulemedicineUltrastructureBiophysicsCell shapeCytoskeletonCortical microtubuleProtoplasma
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Umbilical cord versus bone marrow-derived mesenchymal stromal cells.

2012

incetheplacentaisapostnatal tissue and discarded asmedical waste, harvesting stem cells from this organrepresents a noninvasive and ethically conductive proce-dure. Perinatal stem cells isolated from amnion, chorion,umbilical cord, and cord blood are increasingly viewedas reliable sources of mesenchymal stromal cells (MSCs)alternative to bone marrow-derived ones (BM-MSCs),which are currently the most commonly used in clinicalapplications [1–5].Perinatal stem cells are a bridge between embryonic stemcells (ESCs) and adult stem cells (such as BM-MSCs). Theyshare many characteristics of both cells [1,6]. Considering thestructural complexity of the term ‘‘placenta,’’ we have fo-cused our attent…

Cellular differentiationCellsBone Marrow CellsBiologyCell therapyHumansSettore BIO/13 - BIOLOGIA APPLICATAWharton JellyCell ShapeCells CulturedStem cell transplantation for articular cartilage repairCell ProliferationCulturedMesenchymal Stromal CellsSettore BIO/16 - Anatomia UmanaMesenchymal stem cellMesenchymal Stem CellsCell DifferentiationCell BiologyHematologyBone Marrow Cells; Cell Differentiation; Cell Proliferation; Cell Shape; Cells Cultured; Humans; Mesenchymal Stromal Cells; Stem Cell Research; Wharton JellyStem Cell ResearchEmbryonic stem cellCell biologyCord bloodImmunologymesenchymal stem cells differentiation markers umbilical cord wharton's jelly bone marrow adipose tissueStem cellDevelopmental BiologyAdult stem cell
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Neurons of the dentate molecular layer in the rabbit hippocampus.

2012

The molecular layer of the dentate gyrus appears as the main entrance gate for information into the hippocampus, i.e., where the perforant path axons from the entorhinal cortex synapse onto the spines and dendrites of granule cells. A few dispersed neuronal somata appear intermingled in between and probably control the flow of information in this area. In rabbits, the number of neurons in the molecular layer increases in the first week of postnatal life and then stabilizes to appear permanent and heterogeneous over the individuals' life span, including old animals. By means of Golgi impregnations, NADPH histochemistry, immunocytochemical stainings and intracellular labelings (lucifer yellow…

Central Nervous SystemAnatomy and PhysiologyCell Countchemistry.chemical_compoundMolecular Cell BiologyComparative AnatomyNeuronsMultidisciplinaryNeuronal MorphologyPyramidal CellsQRAnimal ModelsAnatomyElectrophysiologymedicine.anatomical_structureNissl BodiesNissl bodysymbolsMedicineFemaleRabbitsCellular TypesResearch Articlemedicine.drugHistologyScienceNeurophysiologyBiologygamma-Aminobutyric acidsymbols.namesakeModel OrganismsDevelopmental NeuroscienceBiocytinmedicineAnimalsBiologyCell ShapeLucifer yellowStaining and LabelingDentate gyrusPerforant pathEntorhinal cortexElectrophysiological PhenomenaNeuroanatomyElectrophysiologychemistrynervous systemCellular NeuroscienceDentate GyrusBiophysicsNeural Circuit FormationNeurosciencePLoS ONE
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Magnetic field-induced alignment of molecular rotor-shaped cyclophanes

2010

Molecular pinwheels consisting of dipolar substituted cyclophanes in solution can function as free microscopic rotors in the presence of a homogeneous static magnetic field B and a circularly polarized electric field E rotating on a plane containing B. Owing to the high magnetic anisotropy of [26](1,2,3,4,5,6)cyclophane and [36](1,2,3,4,5,6)cyclophane biased by strong ring currents, ∼1 in 105 molecules are expected to align with the C6 symmetry axis perpendicular to a magnetic field of 21 T. The magnetic-field-controlled alignment of rotor-shaped cyclophanes is insignificantly affected by nonpolar solvents, for example, toluene.

ChemistryRotor-shaped cyclophanes; molecular engines; magnetic field-controlled molecular alignment; dipolar rotors in circularly polarized electric field; ab-initio calculations; solvent effectsMagnetostaticsMolecular physicsSymmetry (physics)Magnetic fieldDipolechemistry.chemical_compoundMagnetic anisotropyNuclear magnetic resonanceElectric fieldPerpendicularGeneral Materials SciencePhysical and Theoretical ChemistryCyclophane
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El “giro morfológico”: la forma, condición del sentido

2006

This paper starts from the philosophical contradiction that we can call 'apory of logical fundament'. Logic appears, on the one side, as having the metaphysical pretensions of universality and wholeness and, on the other side, as having local efficiency in computers' concrete world. Several alternatives have tried to go over this apory, from alogical philosophies to logic amplifying attempts. René Thom's ontology changes the terms of the question and, instead of looking for the fundament in logic, he does so in topology. His slogan is: 'We have to found, not geometry in logic, but logic in geometry'. The fundamental ontological implication of this morphologic change is to find the sense con…

Ciencias básicas y experimentalesUNESCO::FILOSOFÍA:FILOSOFÍA [UNESCO]Logic / topologyHumanidadesFilosofíaShapeSenseHª y Fª de la CienciaMorphological turnFilosofía. Etica
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Prediction of Ductile Fractures Occurrence in Deep Drawing of Square Boxes

1996

Abstract The authors propose a new approach for the prediction of tearing in the deep drawing process of square boxes. Such an approach is based on a damage mechanics formulation and in particular on the yield condition for damaging materials proposed by Tvergaard and Needleman and on a strain controlled nucleation model. The flow rule associated to the yield condition is introduced in a finite element explicit formulation founded on the solution of the dynamic equilibrium equation and on an explicit time integration scheme. By this way the developed model allows to calculate the void volume fraction value during the deep drawing process of square boxes and consequently to predict the insur…

Coalescence (physics)Engineeringbusiness.industryMechanical EngineeringStructural engineeringMechanicsIndustrial and Manufacturing EngineeringFinite element methodDamage mechanicsTearingVolume fractionSquare ShapeFormabilityDeep drawingbusinessCIRP Annals
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